Wall clock time and date at job start Tue Mar 31 2020 16:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47364 * 2 1 4 4 N 1.46494 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00194 * 82.99408 * 4 3 2 6 6 O 1.21693 * 120.00289 * 183.96478 * 5 4 3 7 7 C 1.46653 * 119.99888 * 3.96436 * 5 4 3 8 8 O 1.34940 * 126.00750 * 352.97778 * 7 5 4 9 9 C 1.33945 * 109.38054 * 180.02562 * 8 7 5 10 10 C 1.35142 * 108.75177 * 0.02562 * 9 8 7 11 11 C 1.36332 * 125.92668 * 172.94537 * 7 5 4 12 12 C 1.51078 * 143.83947 * 0.07849 * 11 7 5 13 13 C 1.54383 * 105.32040 * 197.10856 * 12 11 7 14 14 C 1.51148 * 143.44144 * 180.02562 * 10 9 8 15 15 C 1.46501 * 120.00153 * 262.99575 * 4 3 2 16 16 H 1.08998 * 110.63980 * 359.29858 * 15 4 3 17 17 C 1.55165 * 110.72110 * 122.44009 * 15 4 3 18 18 C 1.55116 * 101.48431 * 153.73607 * 17 15 4 19 19 N 1.47428 * 104.94537 * 323.22362 * 18 17 15 20 20 C 1.36936 * 125.64695 * 203.97007 * 19 18 17 21 21 H 1.08005 * 119.99874 * 171.32314 * 20 19 18 22 22 C 1.38811 * 120.00249 * 351.32658 * 20 19 18 23 23 N 1.31618 * 120.00010 * 3.87893 * 22 20 19 24 24 Si 1.86799 * 120.00138 * 183.87928 * 22 20 19 25 25 H 1.48507 * 109.47163 * 94.99246 * 24 22 20 26 26 H 1.48500 * 109.47306 * 214.99564 * 24 22 20 27 27 H 1.48509 * 109.47304 * 334.99605 * 24 22 20 28 28 C 1.47018 * 108.70103 * 24.00062 * 19 18 17 29 29 H 1.08996 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47058 * 300.00241 * 1 2 3 31 31 H 1.09000 * 109.46936 * 59.99930 * 1 2 3 32 32 H 1.09000 * 109.46697 * 239.99339 * 2 1 3 33 33 H 1.09006 * 109.46550 * 119.99982 * 2 1 3 34 34 H 1.09004 * 109.47129 * 59.99601 * 3 2 1 35 35 H 1.09000 * 109.47151 * 299.99938 * 3 2 1 36 36 H 1.08002 * 125.62421 * 180.02562 * 9 8 7 37 37 H 1.08993 * 110.29179 * 78.12411 * 12 11 7 38 38 H 1.08994 * 110.29115 * 316.09289 * 12 11 7 39 39 H 1.08994 * 110.76132 * 91.80682 * 13 12 11 40 40 H 1.08998 * 110.75652 * 215.19076 * 13 12 11 41 41 H 1.08997 * 110.29427 * 43.87522 * 14 10 9 42 42 H 1.09006 * 110.36738 * 281.80723 * 14 10 9 43 43 H 1.09003 * 111.00387 * 271.93899 * 17 15 4 44 44 H 1.08991 * 111.00380 * 35.79230 * 17 15 4 45 45 H 1.09002 * 110.42149 * 204.29059 * 18 17 15 46 46 H 1.08999 * 110.30337 * 82.08973 * 18 17 15 47 47 H 0.97002 * 119.99846 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.88661 * 239.52316 * 28 19 18 49 49 H 1.09000 * 109.87929 * 118.36112 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1794 1.2998 -1.1575 6 8 5.3942 1.2273 -1.1494 7 6 3.4494 1.2321 -2.4276 8 8 2.1091 1.1662 -2.5697 9 6 1.8021 1.1166 -3.8725 10 6 2.9468 1.1495 -4.5901 11 6 4.0072 1.2253 -3.6716 12 6 5.3186 1.2658 -4.4205 13 6 4.9493 1.6501 -5.8694 14 6 3.4983 1.1369 -5.9973 15 6 4.2370 1.5972 1.2601 16 1 3.5455 1.7125 2.0948 17 6 5.1856 0.3921 1.4956 18 6 6.2792 1.0303 2.3917 19 7 6.4437 2.4005 1.8732 20 6 7.5633 3.1768 2.0108 21 1 7.6404 4.1127 1.4773 22 6 8.5992 2.7609 2.8360 23 7 8.5392 1.5859 3.4260 24 14 10.0782 3.8688 3.1089 25 1 9.8811 4.6609 4.3495 26 1 11.3016 3.0375 3.2414 27 1 10.2277 4.7888 1.9528 28 6 5.2063 2.7957 1.1846 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 0.8043 1.0597 -4.2820 37 1 5.7963 0.2863 -4.3994 38 1 5.9786 2.0170 -3.9868 39 1 4.9917 2.7307 -6.0052 40 1 5.6013 1.1442 -6.5814 41 1 2.9187 1.8028 -6.6366 42 1 3.4879 0.1239 -6.3998 43 1 4.6705 -0.4144 2.0175 44 1 5.6094 0.0390 0.5556 45 1 7.2139 0.4765 2.3037 46 1 5.9501 1.0548 3.4305 47 1 9.2630 1.2955 4.0029 48 1 5.4214 3.0334 0.1428 49 1 4.7659 3.6605 1.6809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753318096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:54 Heat of formation + Delta-G solvation = 21.060580 kcal Electronic energy + Delta-G solvation = -30028.896059 eV Core-core repulsion = 26151.926064 eV Total energy + Delta-G solvation = -3876.969995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.95074 -39.81002 -37.46841 -36.69094 -35.80305 -32.99620 -31.79593 -30.73927 -30.44945 -29.03996 -27.67804 -26.95145 -25.88628 -24.50002 -23.12783 -22.16582 -21.48672 -20.65288 -20.07181 -19.99805 -18.47544 -17.08803 -16.82942 -16.64911 -16.19048 -15.61862 -15.20486 -14.82738 -14.59102 -14.47251 -14.28780 -14.04254 -13.80743 -13.40051 -13.15116 -13.00315 -12.79056 -12.47262 -12.20787 -12.04569 -11.82617 -11.69413 -11.58844 -11.48134 -11.37915 -11.30572 -11.27671 -10.89443 -10.83791 -10.71189 -10.70316 -10.46210 -9.99988 -9.77624 -9.55115 -9.32928 -9.28285 -8.64706 -8.47907 -8.24877 -6.65210 -5.57321 -2.93379 1.13200 2.23384 2.66808 3.23973 3.38745 3.47961 3.52681 3.55317 3.93326 4.49249 4.61263 4.62556 4.85119 4.87210 4.94312 4.98934 5.03689 5.23800 5.28326 5.34831 5.48171 5.50861 5.56042 5.58626 5.61555 5.65948 5.72896 5.73910 5.82741 5.85570 5.89968 5.91911 5.99118 6.02937 6.03642 6.08678 6.29051 6.32344 6.35706 6.60153 6.60999 6.70967 6.81258 6.87858 7.23154 7.58911 7.70279 7.73771 7.95821 8.37886 8.45659 9.34009 9.95121 10.62237 11.51388 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.003733 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.489087 B = 7498.850757 C = 9228.575424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.106 3.894 4 N -0.597 5.597 5 C 0.592 3.408 6 O -0.485 6.485 7 C -0.051 4.051 8 O -0.149 6.149 9 C -0.008 4.008 10 C -0.217 4.217 11 C -0.112 4.112 12 C -0.055 4.055 13 C -0.119 4.119 14 C -0.045 4.045 15 C 0.136 3.864 16 H 0.091 0.909 17 C -0.158 4.158 18 C 0.171 3.829 19 N -0.596 5.596 20 C -0.216 4.216 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.133 3.867 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.205 0.795 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.015 0.985 47 H 0.251 0.749 48 H 0.035 0.965 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.699 -3.474 -16.138 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.017 4.017 4 N -0.329 5.329 5 C 0.378 3.622 6 O -0.360 6.360 7 C -0.103 4.103 8 O -0.045 6.045 9 C -0.077 4.077 10 C -0.218 4.218 11 C -0.115 4.115 12 C -0.092 4.092 13 C -0.156 4.156 14 C -0.083 4.083 15 C 0.033 3.967 16 H 0.109 0.891 17 C -0.197 4.197 18 C 0.045 3.955 19 N -0.322 5.322 20 C -0.345 4.345 21 H 0.092 0.908 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.742 3.258 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.006 3.994 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.221 0.779 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.033 0.967 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -18.006 -3.495 -15.756 24.180 hybrid contribution 0.482 0.536 0.098 0.727 sum -17.524 -2.959 -15.657 23.686 Atomic orbital electron populations 1.21658 0.95246 1.01655 1.01748 1.21932 0.95965 0.97119 1.02634 1.21840 0.79330 0.97253 1.03282 1.47904 1.06477 1.71715 1.06812 1.16678 0.86369 0.78144 0.80980 1.90985 1.11560 1.48346 1.85101 1.21413 0.80405 1.13376 0.95068 1.84450 1.22936 1.71166 1.25959 1.23341 0.99082 1.04655 0.80635 1.21371 0.93106 1.09120 0.98208 1.21183 0.98244 1.00810 0.91239 1.20542 0.92840 1.03068 0.92795 1.22398 0.95431 1.01524 0.96256 1.20438 0.95373 1.01577 0.90874 1.22260 0.93366 0.98104 0.82951 0.89072 1.23500 0.98056 0.95832 1.02332 1.21591 0.96322 0.85333 0.92211 1.44270 1.10447 1.13234 1.64213 1.19043 0.93296 1.01090 1.21077 0.90762 1.24786 0.98950 0.97477 0.99394 1.69903 1.33023 1.18842 1.35305 0.86091 0.82238 0.79577 0.77862 1.21759 1.21792 1.20696 1.21483 0.87687 0.93347 0.96873 0.92716 0.92676 0.92642 0.91809 0.91626 0.90119 0.89626 0.77862 0.89756 0.89860 0.90860 0.90288 0.90994 0.90443 0.92769 0.90039 0.89177 0.96664 0.93892 0.94737 0.96377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.82 16 2 C -0.14 -1.48 5.74 -26.73 -0.15 -1.64 16 3 C 0.11 1.27 5.00 -4.05 -0.02 1.25 16 4 N -0.60 -9.70 2.56 -165.57 -0.42 -10.12 16 5 C 0.59 10.71 6.66 -12.86 -0.09 10.62 16 6 O -0.49 -10.77 13.25 5.20 0.07 -10.70 16 7 C -0.05 -0.77 6.54 -36.87 -0.24 -1.01 16 8 O -0.15 -1.77 6.06 4.88 0.03 -1.74 16 9 C -0.01 -0.08 12.08 29.63 0.36 0.28 16 10 C -0.22 -2.39 6.93 -104.65 -0.73 -3.12 16 11 C -0.11 -1.58 6.67 -104.27 -0.70 -2.28 16 12 C -0.06 -0.70 6.75 -26.97 -0.18 -0.89 16 13 C -0.12 -1.08 7.06 -25.25 -0.18 -1.26 16 14 C -0.05 -0.39 6.76 -26.91 -0.18 -0.57 16 15 C 0.14 2.56 3.43 -66.09 -0.23 2.33 16 16 H 0.09 1.52 7.77 -51.93 -0.40 1.12 16 17 C -0.16 -3.32 6.43 -24.47 -0.16 -3.48 16 18 C 0.17 4.43 5.63 -2.42 -0.01 4.41 16 19 N -0.60 -16.40 3.40 -169.94 -0.58 -16.98 16 20 C -0.22 -6.43 10.26 -15.06 -0.15 -6.59 16 21 H 0.07 2.16 7.83 -52.48 -0.41 1.75 16 22 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -28.12 10.28 55.49 0.57 -27.55 16 24 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.13 3.07 6.49 -3.07 -0.02 3.05 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.76 6.99 -51.93 -0.36 0.40 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.86 7.81 -51.93 -0.41 0.46 16 35 H 0.09 0.98 5.45 -51.93 -0.28 0.70 16 36 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.88 5.89 -51.93 -0.31 1.57 16 45 H 0.09 2.64 6.36 -51.93 -0.33 2.31 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.03 0.85 6.19 -51.93 -0.32 0.53 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -34.58 380.76 -9.90 -44.48 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.88 Total: -1.09 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.41 Total: -0.09 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.43 Total: -54.66 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.10 Total: -12.44 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.58 -9.90 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753318096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.544 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds