Wall clock time and date at job start Tue Mar 31 2020 16:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47364 * 2 1 4 4 N 1.46494 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00194 * 82.99408 * 4 3 2 6 6 O 1.21693 * 120.00289 * 183.96478 * 5 4 3 7 7 C 1.46653 * 119.99888 * 3.96436 * 5 4 3 8 8 O 1.34940 * 126.00750 * 352.97778 * 7 5 4 9 9 C 1.33945 * 109.38054 * 180.02562 * 8 7 5 10 10 C 1.35142 * 108.75177 * 0.02562 * 9 8 7 11 11 C 1.36332 * 125.92668 * 172.94537 * 7 5 4 12 12 C 1.51078 * 143.83947 * 0.07849 * 11 7 5 13 13 C 1.54383 * 105.32040 * 197.10856 * 12 11 7 14 14 C 1.51148 * 143.44144 * 180.02562 * 10 9 8 15 15 C 1.46501 * 120.00153 * 262.99575 * 4 3 2 16 16 H 1.08998 * 110.63980 * 359.29858 * 15 4 3 17 17 C 1.55165 * 110.72110 * 122.44009 * 15 4 3 18 18 C 1.55116 * 101.48431 * 153.73607 * 17 15 4 19 19 N 1.47428 * 104.94537 * 323.22362 * 18 17 15 20 20 C 1.36936 * 125.64695 * 203.97007 * 19 18 17 21 21 H 1.08005 * 119.99874 * 171.32314 * 20 19 18 22 22 C 1.38811 * 120.00249 * 351.32658 * 20 19 18 23 23 N 1.31618 * 120.00010 * 3.87893 * 22 20 19 24 24 Si 1.86799 * 120.00138 * 183.87928 * 22 20 19 25 25 H 1.48507 * 109.47163 * 94.99246 * 24 22 20 26 26 H 1.48500 * 109.47306 * 214.99564 * 24 22 20 27 27 H 1.48509 * 109.47304 * 334.99605 * 24 22 20 28 28 C 1.47018 * 108.70103 * 24.00062 * 19 18 17 29 29 H 1.08996 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47058 * 300.00241 * 1 2 3 31 31 H 1.09000 * 109.46936 * 59.99930 * 1 2 3 32 32 H 1.09000 * 109.46697 * 239.99339 * 2 1 3 33 33 H 1.09006 * 109.46550 * 119.99982 * 2 1 3 34 34 H 1.09004 * 109.47129 * 59.99601 * 3 2 1 35 35 H 1.09000 * 109.47151 * 299.99938 * 3 2 1 36 36 H 1.08002 * 125.62421 * 180.02562 * 9 8 7 37 37 H 1.08993 * 110.29179 * 78.12411 * 12 11 7 38 38 H 1.08994 * 110.29115 * 316.09289 * 12 11 7 39 39 H 1.08994 * 110.76132 * 91.80682 * 13 12 11 40 40 H 1.08998 * 110.75652 * 215.19076 * 13 12 11 41 41 H 1.08997 * 110.29427 * 43.87522 * 14 10 9 42 42 H 1.09006 * 110.36738 * 281.80723 * 14 10 9 43 43 H 1.09003 * 111.00387 * 271.93899 * 17 15 4 44 44 H 1.08991 * 111.00380 * 35.79230 * 17 15 4 45 45 H 1.09002 * 110.42149 * 204.29059 * 18 17 15 46 46 H 1.08999 * 110.30337 * 82.08973 * 18 17 15 47 47 H 0.97002 * 119.99846 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.88661 * 239.52316 * 28 19 18 49 49 H 1.09000 * 109.87929 * 118.36112 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1794 1.2998 -1.1575 6 8 5.3942 1.2273 -1.1494 7 6 3.4494 1.2321 -2.4276 8 8 2.1091 1.1662 -2.5697 9 6 1.8021 1.1166 -3.8725 10 6 2.9468 1.1495 -4.5901 11 6 4.0072 1.2253 -3.6716 12 6 5.3186 1.2658 -4.4205 13 6 4.9493 1.6501 -5.8694 14 6 3.4983 1.1369 -5.9973 15 6 4.2370 1.5972 1.2601 16 1 3.5455 1.7125 2.0948 17 6 5.1856 0.3921 1.4956 18 6 6.2792 1.0303 2.3917 19 7 6.4437 2.4005 1.8732 20 6 7.5633 3.1768 2.0108 21 1 7.6404 4.1127 1.4773 22 6 8.5992 2.7609 2.8360 23 7 8.5392 1.5859 3.4260 24 14 10.0782 3.8688 3.1089 25 1 9.8811 4.6609 4.3495 26 1 11.3016 3.0375 3.2414 27 1 10.2277 4.7888 1.9528 28 6 5.2063 2.7957 1.1846 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 0.8043 1.0597 -4.2820 37 1 5.7963 0.2863 -4.3994 38 1 5.9786 2.0170 -3.9868 39 1 4.9917 2.7307 -6.0052 40 1 5.6013 1.1442 -6.5814 41 1 2.9187 1.8028 -6.6366 42 1 3.4879 0.1239 -6.3998 43 1 4.6705 -0.4144 2.0175 44 1 5.6094 0.0390 0.5556 45 1 7.2139 0.4765 2.3037 46 1 5.9501 1.0548 3.4305 47 1 9.2630 1.2955 4.0029 48 1 5.4214 3.0334 0.1428 49 1 4.7659 3.6605 1.6809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753318096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:53 Heat of formation + Delta-G solvation = 0.605041 kcal Electronic energy + Delta-G solvation = -30029.783078 eV Core-core repulsion = 26151.926064 eV Total energy + Delta-G solvation = -3877.857014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.88388 -41.23371 -38.51775 -38.29300 -37.06417 -34.63370 -33.32220 -31.69850 -31.53649 -30.87743 -29.22179 -28.05969 -27.00717 -26.41792 -24.24534 -23.20215 -22.53139 -22.03649 -21.79308 -21.13351 -19.65431 -18.93636 -18.23920 -17.63717 -17.19651 -17.09281 -16.69618 -16.14743 -15.95882 -15.71512 -15.57424 -15.45987 -14.97956 -14.79565 -14.38068 -14.09835 -13.98549 -13.81890 -13.66020 -13.43143 -13.05689 -12.98443 -12.84476 -12.74528 -12.58943 -12.58124 -12.50886 -12.27806 -12.10260 -12.07795 -12.02967 -12.00643 -11.88592 -11.68927 -11.40011 -10.86342 -10.72708 -10.25378 -9.77207 -9.44871 -8.86025 -7.83613 -5.23407 0.06924 1.35516 1.42342 1.45568 1.54334 1.58538 2.06442 2.14622 2.48966 3.06864 3.29770 3.49951 3.70982 3.83172 3.84438 3.94870 4.02960 4.11871 4.16261 4.18181 4.20282 4.22067 4.42585 4.47885 4.54354 4.65671 4.72027 4.75230 4.78726 4.83521 4.90389 4.92210 4.96377 4.98955 5.03235 5.03791 5.11288 5.17703 5.25899 5.28092 5.30753 5.42192 5.45589 5.53406 5.59236 5.68487 5.74033 5.89548 6.23939 6.36347 7.05567 7.08329 7.75130 8.41257 9.23426 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.003733 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.489087 B = 7498.850757 C = 9228.575424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.102 3.898 4 N -0.593 5.593 5 C 0.586 3.414 6 O -0.545 6.545 7 C -0.085 4.085 8 O -0.144 6.144 9 C 0.020 3.980 10 C -0.229 4.229 11 C -0.131 4.131 12 C -0.065 4.065 13 C -0.111 4.111 14 C -0.040 4.040 15 C 0.153 3.847 16 H 0.124 0.876 17 C -0.142 4.142 18 C 0.177 3.823 19 N -0.618 5.618 20 C -0.242 4.242 21 H 0.071 0.929 22 C -0.064 4.064 23 N -0.948 5.948 24 Si 0.982 3.018 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.273 1.273 28 C 0.132 3.868 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.257 0.743 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.003 0.997 47 H 0.248 0.752 48 H 0.013 0.987 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.152 -3.175 -17.853 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C -0.019 4.019 4 N -0.323 5.323 5 C 0.376 3.624 6 O -0.424 6.424 7 C -0.136 4.136 8 O -0.040 6.040 9 C -0.048 4.048 10 C -0.230 4.230 11 C -0.134 4.134 12 C -0.102 4.102 13 C -0.149 4.149 14 C -0.077 4.077 15 C 0.049 3.951 16 H 0.142 0.858 17 C -0.181 4.181 18 C 0.052 3.948 19 N -0.344 5.344 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.257 4.257 23 N -0.597 5.597 24 Si 0.810 3.190 25 H -0.207 1.207 26 H -0.217 1.217 27 H -0.198 1.198 28 C 0.006 3.994 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.273 0.727 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.031 0.969 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -21.530 -3.191 -17.480 27.915 hybrid contribution 1.510 0.430 0.538 1.660 sum -20.020 -2.761 -16.942 26.371 Atomic orbital electron populations 1.21619 0.92751 1.02450 1.02824 1.21860 0.97961 0.95690 1.01505 1.22161 0.76343 0.98645 1.04759 1.47933 1.08177 1.70912 1.05323 1.17097 0.86012 0.77002 0.82319 1.90945 1.14131 1.51130 1.86207 1.20796 0.81857 1.17106 0.93887 1.84418 1.21014 1.71083 1.27490 1.24387 1.00744 1.00478 0.79233 1.21792 0.92486 1.09820 0.98905 1.21618 0.99850 0.99902 0.91992 1.20663 0.92346 1.01831 0.95360 1.22415 0.96766 1.01985 0.93697 1.20501 0.94436 1.02991 0.89742 1.22016 0.93107 0.94626 0.85341 0.85777 1.23253 0.97231 0.97284 1.00321 1.21337 0.96023 0.84890 0.92560 1.44557 1.11499 1.13836 1.64503 1.19371 0.94782 1.01466 1.21527 0.91109 1.25673 1.01842 0.98939 0.99207 1.70140 1.33721 1.20238 1.35588 0.85014 0.78246 0.77706 0.78066 1.20718 1.21707 1.19790 1.21583 0.87249 0.95602 0.95000 0.92093 0.91728 0.91447 0.93267 0.92528 0.88092 0.88657 0.72678 0.90487 0.92825 0.90622 0.88315 0.88495 0.89011 0.89632 0.92396 0.93350 0.97909 0.94225 0.96943 0.95511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.13 -2.54 5.74 30.59 0.18 -2.36 16 3 C 0.10 2.23 5.00 86.38 0.43 2.66 16 4 N -0.59 -19.19 2.56 -795.96 -2.03 -21.23 16 5 C 0.59 22.11 6.66 86.44 0.58 22.68 16 6 O -0.54 -26.12 13.25 -4.32 -0.06 -26.18 16 7 C -0.09 -2.59 6.54 24.02 0.16 -2.44 16 8 O -0.14 -3.10 6.06 -5.44 -0.03 -3.13 16 9 C 0.02 0.31 12.08 67.11 0.81 1.12 16 10 C -0.23 -4.45 6.93 -19.88 -0.14 -4.59 16 11 C -0.13 -3.71 6.67 -19.64 -0.13 -3.84 16 12 C -0.06 -1.73 6.75 30.44 0.21 -1.53 16 13 C -0.11 -1.88 7.06 31.55 0.22 -1.66 16 14 C -0.04 -0.55 6.76 30.48 0.21 -0.34 16 15 C 0.15 5.77 3.43 46.18 0.16 5.93 16 16 H 0.12 3.90 7.77 -2.39 -0.02 3.88 16 17 C -0.14 -6.14 6.43 32.06 0.21 -5.93 16 18 C 0.18 9.66 5.63 86.93 0.49 10.15 16 19 N -0.62 -35.63 3.40 -691.58 -2.35 -37.98 16 20 C -0.24 -15.02 10.26 84.03 0.86 -14.16 16 21 H 0.07 4.29 7.83 -2.91 -0.02 4.27 16 22 C -0.06 -3.89 5.49 84.86 0.47 -3.43 16 23 N -0.95 -60.13 10.28 21.65 0.22 -59.91 16 24 Si 0.98 48.76 29.55 68.60 2.03 50.79 16 25 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 26 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 27 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 28 C 0.13 6.30 6.49 86.73 0.56 6.87 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 1.10 6.99 -2.39 -0.02 1.08 16 33 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.10 1.82 7.81 -2.38 -0.02 1.80 16 35 H 0.10 1.94 5.45 -2.39 -0.01 1.93 16 36 H 0.26 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.06 2.82 5.89 -2.39 -0.01 2.80 16 45 H 0.05 3.02 6.36 -2.39 -0.02 3.00 16 46 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 48 H 0.01 0.66 6.19 -2.39 -0.01 0.64 16 49 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -82.33 380.76 4.69 -77.64 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.94 Total: 11.92 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.97 Total: 8.08 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -4.16 Total: -119.11 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.09 Total: -29.31 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Total: -82.33 4.69 -77.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753318096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.242 kcal (2) G-P(sol) polarization free energy of solvation -82.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds