Wall clock time and date at job start Tue Mar 31 2020 16:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47198 * 2 1 4 4 N 1.46494 * 109.47186 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99961 * 276.14423 * 4 3 2 6 6 O 1.21694 * 119.99795 * 185.41852 * 5 4 3 7 7 C 1.46654 * 120.00235 * 5.41512 * 5 4 3 8 8 O 1.34946 * 126.00566 * 357.24778 * 7 5 4 9 9 C 1.33941 * 109.37670 * 179.97438 * 8 7 5 10 10 C 1.35144 * 108.75762 * 359.97438 * 9 8 7 11 11 C 1.36476 * 126.00984 * 176.92789 * 7 5 4 12 12 C 1.51079 * 143.66431 * 0.83356 * 11 7 5 13 13 C 1.54375 * 105.29654 * 162.25255 * 12 11 7 14 14 C 1.51141 * 143.44573 * 180.02562 * 10 9 8 15 15 C 1.46496 * 120.00035 * 96.14337 * 4 3 2 16 16 H 1.09007 * 110.88898 * 190.06692 * 15 4 3 17 17 C 1.55157 * 111.00702 * 66.18797 * 15 4 3 18 18 C 1.54323 * 102.93946 * 277.43055 * 17 15 4 19 19 N 1.47025 * 107.27235 * 337.80345 * 18 17 15 20 20 C 1.36935 * 125.64490 * 178.99310 * 19 18 17 21 21 H 1.08001 * 119.99691 * 179.97438 * 20 19 18 22 22 C 1.38812 * 120.00650 * 359.97049 * 20 19 18 23 23 N 1.31622 * 119.99442 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47144 * 90.00175 * 24 22 20 26 26 H 1.48500 * 109.47050 * 209.99933 * 24 22 20 27 27 H 1.48502 * 109.47498 * 329.99590 * 24 22 20 28 28 C 1.47426 * 108.70097 * 358.94093 * 19 18 17 29 29 H 1.08996 * 109.47222 * 60.00400 * 1 2 3 30 30 H 1.09008 * 109.46984 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47562 * 300.00080 * 1 2 3 32 32 H 1.08994 * 109.47099 * 239.99663 * 2 1 3 33 33 H 1.09004 * 109.46912 * 120.00162 * 2 1 3 34 34 H 1.09003 * 109.46835 * 59.99585 * 3 2 1 35 35 H 1.08996 * 109.46708 * 299.99915 * 3 2 1 36 36 H 1.08003 * 125.62351 * 180.02562 * 9 8 7 37 37 H 1.09005 * 110.42539 * 43.20521 * 12 11 7 38 38 H 1.09006 * 110.17625 * 281.17214 * 12 11 7 39 39 H 1.09000 * 110.75662 * 267.94250 * 13 12 11 40 40 H 1.09000 * 110.91724 * 144.64154 * 13 12 11 41 41 H 1.08997 * 110.28426 * 316.10162 * 14 10 9 42 42 H 1.08996 * 110.29123 * 78.21163 * 14 10 9 43 43 H 1.09000 * 110.71524 * 35.78895 * 17 15 4 44 44 H 1.09003 * 110.72371 * 158.88575 * 17 15 4 45 45 H 1.08996 * 109.88546 * 97.22128 * 18 17 15 46 46 H 1.09001 * 109.87927 * 218.23187 * 18 17 15 47 47 H 0.96998 * 119.99314 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.36780 * 265.28995 * 28 19 18 49 49 H 1.09000 * 110.36518 * 142.97012 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1783 1.3177 1.1614 6 8 5.3912 1.4164 1.1749 7 6 3.4495 1.0631 2.4083 8 8 2.1090 0.9842 2.5417 9 6 1.8034 0.7402 3.8227 10 6 2.9492 0.6577 4.5346 11 6 4.0079 0.8582 3.6366 12 6 5.3215 0.7827 4.3790 13 6 4.9565 0.9448 5.8702 14 6 3.5025 0.4287 5.9224 15 6 4.2380 1.5780 -1.2605 16 1 5.3007 1.3834 -1.1152 17 6 4.0099 2.9783 -1.8886 18 6 2.6625 2.8125 -2.6226 19 7 2.4740 1.3755 -2.8697 20 6 1.3895 0.8068 -3.4826 21 1 1.3457 -0.2638 -3.6179 22 6 0.3466 1.6061 -3.9300 23 7 0.4003 2.9109 -3.7655 24 14 -1.1329 0.8301 -4.7654 25 1 -2.1578 0.4939 -3.7448 26 1 -1.7060 1.7868 -5.7460 27 1 -0.7112 -0.4074 -5.4698 28 6 3.6463 0.6486 -2.3494 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9562 -0.8900 36 1 0.8059 0.6270 4.2210 37 1 5.9843 1.5881 4.0624 38 1 5.7947 -0.1844 4.2086 39 1 5.0059 1.9921 6.1684 40 1 5.6057 0.3348 6.4983 41 1 2.9275 0.9933 6.6563 42 1 3.4867 -0.6338 6.1650 43 1 3.9355 3.7411 -1.1136 44 1 4.8076 3.2206 -2.5909 45 1 1.8521 3.1910 -1.9998 46 1 2.6867 3.3537 -3.5685 47 1 -0.3287 3.4694 -4.0778 48 1 4.3739 0.4840 -3.1441 49 1 3.3399 -0.3015 -1.9117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753318097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:00 Heat of formation + Delta-G solvation = 23.078747 kcal Electronic energy + Delta-G solvation = -30735.382749 eV Core-core repulsion = 26858.500269 eV Total energy + Delta-G solvation = -3876.882480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.85657 -39.73431 -37.58781 -37.28309 -34.80556 -32.93148 -31.60769 -30.68004 -30.38311 -29.15529 -27.85550 -26.98197 -25.68900 -24.40896 -23.22769 -22.03878 -21.03232 -20.42475 -20.07979 -19.78304 -18.58359 -17.02685 -16.88182 -16.50032 -16.47906 -15.60539 -15.21183 -14.67622 -14.52351 -14.41552 -14.07192 -13.77144 -13.66588 -13.37239 -13.05360 -12.87448 -12.62306 -12.32132 -11.95199 -11.90716 -11.82686 -11.65612 -11.45216 -11.31017 -11.25126 -11.17737 -11.11449 -10.97090 -10.89379 -10.48814 -10.29656 -10.15622 -10.09258 -9.89480 -9.66219 -9.40973 -9.22663 -8.68349 -8.57161 -8.11157 -6.86446 -5.74993 -3.08232 1.19449 2.30148 2.80735 3.36477 3.37525 3.43492 3.44416 3.47000 3.97658 4.46466 4.60326 4.69470 4.84639 4.99771 5.08123 5.31375 5.38393 5.45096 5.50587 5.53681 5.57733 5.59546 5.68222 5.71475 5.74250 5.84069 5.84984 5.94240 5.99988 6.01462 6.08044 6.12894 6.22601 6.32497 6.36107 6.37550 6.41840 6.49802 6.54913 6.64090 6.75588 6.86995 6.94063 6.98630 7.21016 7.52664 7.54922 7.76677 7.83373 8.19426 8.37759 9.17682 9.77331 10.43194 11.36319 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.003794 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.293572 B = 7378.449016 C = 8348.702570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.092 3.908 4 N -0.575 5.575 5 C 0.594 3.406 6 O -0.536 6.536 7 C -0.048 4.048 8 O -0.137 6.137 9 C -0.001 4.001 10 C -0.222 4.222 11 C -0.118 4.118 12 C -0.052 4.052 13 C -0.119 4.119 14 C -0.045 4.045 15 C 0.124 3.876 16 H 0.099 0.901 17 C -0.156 4.156 18 C 0.174 3.826 19 N -0.600 5.600 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.005 4.005 23 N -0.921 5.921 24 Si 0.905 3.095 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.124 3.876 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.205 0.795 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.044 0.956 47 H 0.252 0.748 48 H 0.032 0.968 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 -3.610 17.348 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.030 4.030 4 N -0.304 5.304 5 C 0.382 3.618 6 O -0.416 6.416 7 C -0.099 4.099 8 O -0.032 6.032 9 C -0.071 4.071 10 C -0.223 4.223 11 C -0.121 4.121 12 C -0.089 4.089 13 C -0.156 4.156 14 C -0.082 4.082 15 C 0.020 3.980 16 H 0.116 0.884 17 C -0.195 4.195 18 C 0.050 3.950 19 N -0.327 5.327 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.201 4.201 23 N -0.569 5.569 24 Si 0.736 3.264 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.003 4.003 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.221 0.779 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.820 -3.434 16.952 17.956 hybrid contribution -1.055 -0.413 -0.363 1.190 sum 3.764 -3.848 16.589 17.441 Atomic orbital electron populations 1.21596 0.95451 1.00821 1.02063 1.21800 0.96241 0.96862 1.01126 1.22308 0.77281 0.98341 1.05048 1.47810 1.07995 1.69099 1.05457 1.16742 0.86072 0.77541 0.81449 1.90805 1.12410 1.52924 1.85455 1.21227 0.80697 1.12696 0.95319 1.84587 1.22690 1.68761 1.27207 1.23420 0.99181 1.03023 0.81433 1.21258 0.93086 1.09515 0.98467 1.21116 0.98128 1.01267 0.91540 1.20496 0.92837 1.02988 0.92550 1.22377 0.95587 1.01748 0.95889 1.20404 0.95179 1.01269 0.91324 1.22319 0.95912 0.97240 0.82573 0.88354 1.23281 1.01003 0.95657 0.99601 1.21221 0.90672 0.85409 0.97724 1.44524 1.17589 1.01806 1.68796 1.18954 0.94137 0.91596 1.30185 0.90592 1.24721 0.98525 0.95512 1.01330 1.69953 1.32578 1.02543 1.51787 0.86220 0.83050 0.78011 0.79117 1.21567 1.21817 1.20818 1.21946 0.90614 0.94761 0.92935 0.91087 0.93651 0.93855 0.90906 0.93851 0.91592 0.84977 0.77864 0.90110 0.90076 0.90943 0.90396 0.90998 0.90532 0.91898 0.91251 0.93178 0.93739 0.93760 0.95076 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.12 -2.13 5.51 -26.73 -0.15 -2.28 16 3 C 0.09 1.68 4.14 -4.05 -0.02 1.67 16 4 N -0.57 -10.54 2.52 -165.22 -0.42 -10.96 16 5 C 0.59 10.94 7.59 -12.86 -0.10 10.85 16 6 O -0.54 -10.78 16.30 5.19 0.08 -10.70 16 7 C -0.05 -0.78 6.40 -36.82 -0.24 -1.01 16 8 O -0.14 -2.02 5.75 4.88 0.03 -1.99 16 9 C 0.00 -0.01 12.08 29.63 0.36 0.35 16 10 C -0.22 -2.65 6.93 -104.74 -0.73 -3.38 16 11 C -0.12 -1.69 6.66 -104.31 -0.69 -2.38 16 12 C -0.05 -0.61 6.75 -26.98 -0.18 -0.79 16 13 C -0.12 -1.02 7.06 -25.29 -0.18 -1.20 16 14 C -0.04 -0.39 6.76 -26.95 -0.18 -0.58 16 15 C 0.12 2.30 3.61 -65.78 -0.24 2.06 16 16 H 0.10 1.79 7.12 -51.93 -0.37 1.42 16 17 C -0.16 -2.95 6.56 -24.90 -0.16 -3.12 16 18 C 0.17 3.96 4.30 -3.06 -0.01 3.95 16 19 N -0.60 -13.94 2.18 -170.07 -0.37 -14.31 16 20 C -0.22 -5.62 10.28 -15.06 -0.15 -5.77 16 21 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 23 N -0.92 -25.30 10.31 55.49 0.57 -24.73 16 24 Si 0.91 21.14 29.55 -169.99 -5.02 16.11 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 C 0.12 2.49 6.09 -2.53 -0.02 2.47 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.41 5.72 -51.93 -0.30 1.11 16 33 H 0.04 0.72 6.44 -51.93 -0.33 0.39 16 34 H 0.07 1.17 5.78 -51.93 -0.30 0.87 16 35 H 0.13 2.85 3.69 -51.93 -0.19 2.66 16 36 H 0.20 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.05 1.25 5.82 -51.93 -0.30 0.95 16 46 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 47 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.97 6.07 -51.93 -0.32 0.65 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -29.14 374.09 -9.44 -38.59 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.54 Total: 3.71 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.41 Total: -1.36 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.22 Total: -50.00 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.11 Total: -12.69 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.14 -9.44 -38.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753318097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.668 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds