Wall clock time and date at job start Tue Mar 31 2020 16:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47198 * 2 1 4 4 N 1.46494 * 109.47186 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99961 * 276.14423 * 4 3 2 6 6 O 1.21694 * 119.99795 * 185.41852 * 5 4 3 7 7 C 1.46654 * 120.00235 * 5.41512 * 5 4 3 8 8 O 1.34946 * 126.00566 * 357.24778 * 7 5 4 9 9 C 1.33941 * 109.37670 * 179.97438 * 8 7 5 10 10 C 1.35144 * 108.75762 * 359.97438 * 9 8 7 11 11 C 1.36476 * 126.00984 * 176.92789 * 7 5 4 12 12 C 1.51079 * 143.66431 * 0.83356 * 11 7 5 13 13 C 1.54375 * 105.29654 * 162.25255 * 12 11 7 14 14 C 1.51141 * 143.44573 * 180.02562 * 10 9 8 15 15 C 1.46496 * 120.00035 * 96.14337 * 4 3 2 16 16 H 1.09007 * 110.88898 * 190.06692 * 15 4 3 17 17 C 1.55157 * 111.00702 * 66.18797 * 15 4 3 18 18 C 1.54323 * 102.93946 * 277.43055 * 17 15 4 19 19 N 1.47025 * 107.27235 * 337.80345 * 18 17 15 20 20 C 1.36935 * 125.64490 * 178.99310 * 19 18 17 21 21 H 1.08001 * 119.99691 * 179.97438 * 20 19 18 22 22 C 1.38812 * 120.00650 * 359.97049 * 20 19 18 23 23 N 1.31622 * 119.99442 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47144 * 90.00175 * 24 22 20 26 26 H 1.48500 * 109.47050 * 209.99933 * 24 22 20 27 27 H 1.48502 * 109.47498 * 329.99590 * 24 22 20 28 28 C 1.47426 * 108.70097 * 358.94093 * 19 18 17 29 29 H 1.08996 * 109.47222 * 60.00400 * 1 2 3 30 30 H 1.09008 * 109.46984 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47562 * 300.00080 * 1 2 3 32 32 H 1.08994 * 109.47099 * 239.99663 * 2 1 3 33 33 H 1.09004 * 109.46912 * 120.00162 * 2 1 3 34 34 H 1.09003 * 109.46835 * 59.99585 * 3 2 1 35 35 H 1.08996 * 109.46708 * 299.99915 * 3 2 1 36 36 H 1.08003 * 125.62351 * 180.02562 * 9 8 7 37 37 H 1.09005 * 110.42539 * 43.20521 * 12 11 7 38 38 H 1.09006 * 110.17625 * 281.17214 * 12 11 7 39 39 H 1.09000 * 110.75662 * 267.94250 * 13 12 11 40 40 H 1.09000 * 110.91724 * 144.64154 * 13 12 11 41 41 H 1.08997 * 110.28426 * 316.10162 * 14 10 9 42 42 H 1.08996 * 110.29123 * 78.21163 * 14 10 9 43 43 H 1.09000 * 110.71524 * 35.78895 * 17 15 4 44 44 H 1.09003 * 110.72371 * 158.88575 * 17 15 4 45 45 H 1.08996 * 109.88546 * 97.22128 * 18 17 15 46 46 H 1.09001 * 109.87927 * 218.23187 * 18 17 15 47 47 H 0.96998 * 119.99314 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.36780 * 265.28995 * 28 19 18 49 49 H 1.09000 * 110.36518 * 142.97012 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1783 1.3177 1.1614 6 8 5.3912 1.4164 1.1749 7 6 3.4495 1.0631 2.4083 8 8 2.1090 0.9842 2.5417 9 6 1.8034 0.7402 3.8227 10 6 2.9492 0.6577 4.5346 11 6 4.0079 0.8582 3.6366 12 6 5.3215 0.7827 4.3790 13 6 4.9565 0.9448 5.8702 14 6 3.5025 0.4287 5.9224 15 6 4.2380 1.5780 -1.2605 16 1 5.3007 1.3834 -1.1152 17 6 4.0099 2.9783 -1.8886 18 6 2.6625 2.8125 -2.6226 19 7 2.4740 1.3755 -2.8697 20 6 1.3895 0.8068 -3.4826 21 1 1.3457 -0.2638 -3.6179 22 6 0.3466 1.6061 -3.9300 23 7 0.4003 2.9109 -3.7655 24 14 -1.1329 0.8301 -4.7654 25 1 -2.1578 0.4939 -3.7448 26 1 -1.7060 1.7868 -5.7460 27 1 -0.7112 -0.4074 -5.4698 28 6 3.6463 0.6486 -2.3494 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9562 -0.8900 36 1 0.8059 0.6270 4.2210 37 1 5.9843 1.5881 4.0624 38 1 5.7947 -0.1844 4.2086 39 1 5.0059 1.9921 6.1684 40 1 5.6057 0.3348 6.4983 41 1 2.9275 0.9933 6.6563 42 1 3.4867 -0.6338 6.1650 43 1 3.9355 3.7411 -1.1136 44 1 4.8076 3.2206 -2.5909 45 1 1.8521 3.1910 -1.9998 46 1 2.6867 3.3537 -3.5685 47 1 -0.3287 3.4694 -4.0778 48 1 4.3739 0.4840 -3.1441 49 1 3.3399 -0.3015 -1.9117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753318097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:58 Heat of formation + Delta-G solvation = 9.157427 kcal Electronic energy + Delta-G solvation = -30735.986423 eV Core-core repulsion = 26858.500269 eV Total energy + Delta-G solvation = -3877.486154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.88226 -41.22313 -39.09797 -38.24299 -36.36594 -34.64671 -33.24416 -31.65199 -31.46392 -30.84067 -29.41733 -28.01915 -27.23438 -26.14557 -24.40966 -23.05548 -22.45374 -21.93872 -21.48628 -21.02363 -19.86709 -18.86255 -18.17472 -17.88377 -17.53964 -16.82054 -16.61618 -16.12576 -15.90765 -15.76308 -15.63367 -15.25045 -14.85730 -14.79794 -14.20755 -13.98731 -13.95203 -13.73920 -13.62644 -13.54955 -12.98284 -12.87333 -12.84245 -12.64728 -12.60570 -12.57578 -12.51768 -12.08374 -12.05238 -12.02276 -12.01041 -11.84597 -11.82001 -11.52473 -11.44174 -10.91783 -10.64364 -10.21873 -9.79956 -9.43187 -8.80598 -7.77233 -5.10803 0.04891 1.35469 1.49266 1.50583 1.57639 1.65519 2.05936 2.18158 2.53674 3.09465 3.43075 3.49980 3.67871 3.84968 3.87903 3.98375 4.10868 4.16422 4.18782 4.23023 4.27100 4.28796 4.46086 4.52424 4.62433 4.67478 4.73210 4.81182 4.82541 4.86155 4.94138 4.95919 4.99479 5.02831 5.06475 5.07148 5.12805 5.20080 5.27222 5.35223 5.41598 5.46383 5.53026 5.55435 5.62221 5.67071 5.81979 5.97724 6.23148 6.38110 6.96680 7.16612 7.81933 8.47194 9.32911 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.003794 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.293572 B = 7378.449016 C = 8348.702570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 C 0.104 3.896 4 N -0.579 5.579 5 C 0.593 3.407 6 O -0.562 6.562 7 C -0.091 4.091 8 O -0.152 6.152 9 C 0.011 3.989 10 C -0.228 4.228 11 C -0.122 4.122 12 C -0.059 4.059 13 C -0.110 4.110 14 C -0.042 4.042 15 C 0.131 3.869 16 H 0.108 0.892 17 C -0.143 4.143 18 C 0.189 3.811 19 N -0.609 5.609 20 C -0.218 4.218 21 H 0.077 0.923 22 C -0.053 4.053 23 N -0.947 5.947 24 Si 0.961 3.039 25 H -0.285 1.285 26 H -0.301 1.301 27 H -0.275 1.275 28 C 0.126 3.874 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.246 0.754 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.025 0.975 46 H 0.010 0.990 47 H 0.244 0.756 48 H 0.041 0.959 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -5.006 20.204 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C -0.018 4.018 4 N -0.307 5.307 5 C 0.383 3.617 6 O -0.444 6.444 7 C -0.142 4.142 8 O -0.048 6.048 9 C -0.058 4.058 10 C -0.229 4.229 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.148 4.148 14 C -0.079 4.079 15 C 0.027 3.973 16 H 0.126 0.874 17 C -0.182 4.182 18 C 0.064 3.936 19 N -0.335 5.335 20 C -0.347 4.347 21 H 0.095 0.905 22 C -0.246 4.246 23 N -0.596 5.596 24 Si 0.791 3.209 25 H -0.212 1.212 26 H -0.228 1.228 27 H -0.200 1.200 28 C 0.000 4.000 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.262 0.738 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.043 0.957 46 H 0.028 0.972 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.678 -4.857 19.818 20.934 hybrid contribution -0.982 -0.018 -1.145 1.509 sum 3.696 -4.874 18.674 19.650 Atomic orbital electron populations 1.21519 0.94693 1.01642 1.01321 1.21664 0.96741 0.95980 1.00451 1.22077 0.77335 0.98634 1.03722 1.47814 1.07892 1.69515 1.05528 1.16997 0.85980 0.76698 0.81978 1.90769 1.13421 1.54184 1.86021 1.20864 0.81661 1.16682 0.95010 1.84517 1.21906 1.69338 1.29002 1.24323 1.00991 1.00325 0.80137 1.21744 0.92297 1.09234 0.99666 1.21646 1.00197 0.99203 0.91442 1.20680 0.91706 1.02599 0.94668 1.22404 0.96089 1.02678 0.93599 1.20529 0.94991 1.02580 0.89779 1.22207 0.96297 0.96252 0.82514 0.87421 1.23154 0.99191 0.96219 0.99643 1.20909 0.91987 0.84841 0.95831 1.44630 1.18025 1.02314 1.68568 1.19169 0.94662 0.91675 1.29193 0.90504 1.25337 1.00805 0.95893 1.02558 1.70143 1.32860 1.03543 1.53053 0.85339 0.80435 0.77178 0.77992 1.21164 1.22811 1.20026 1.22021 0.89682 0.94799 0.93501 0.94477 0.92017 0.91840 0.93096 0.92720 0.90868 0.88218 0.73788 0.91476 0.89788 0.90529 0.87906 0.88911 0.89051 0.91413 0.89495 0.95740 0.97218 0.94633 0.94144 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.91 71.98 0.71 -3.64 16 2 C -0.11 -3.81 5.51 30.59 0.17 -3.65 16 3 C 0.10 3.87 4.14 86.38 0.36 4.23 16 4 N -0.58 -21.42 2.52 -794.84 -2.01 -23.42 16 5 C 0.59 21.94 7.59 86.44 0.66 22.60 16 6 O -0.56 -22.79 16.30 -4.33 -0.07 -22.86 16 7 C -0.09 -2.91 6.40 24.06 0.15 -2.76 16 8 O -0.15 -4.22 5.75 -5.47 -0.03 -4.25 16 9 C 0.01 0.23 12.08 67.11 0.81 1.04 16 10 C -0.23 -4.75 6.93 -19.94 -0.14 -4.89 16 11 C -0.12 -3.32 6.66 -19.66 -0.13 -3.45 16 12 C -0.06 -1.31 6.75 30.43 0.21 -1.10 16 13 C -0.11 -1.53 7.06 31.53 0.22 -1.31 16 14 C -0.04 -0.57 6.76 30.46 0.21 -0.36 16 15 C 0.13 4.90 3.61 46.38 0.17 5.07 16 16 H 0.11 3.87 7.12 -2.38 -0.02 3.85 16 17 C -0.14 -5.46 6.56 31.78 0.21 -5.25 16 18 C 0.19 8.94 4.30 86.73 0.37 9.32 16 19 N -0.61 -28.98 2.18 -691.99 -1.51 -30.49 16 20 C -0.22 -11.33 10.28 84.03 0.86 -10.46 16 21 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.05 -2.82 5.49 84.86 0.47 -2.36 16 23 N -0.95 -53.96 10.31 21.65 0.22 -53.74 16 24 Si 0.96 44.17 29.55 68.60 2.03 46.19 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 28 C 0.13 5.07 6.09 86.85 0.53 5.60 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.98 5.72 -2.39 -0.01 1.96 16 33 H 0.05 1.77 6.44 -2.38 -0.02 1.76 16 34 H 0.07 2.60 5.78 -2.39 -0.01 2.59 16 35 H 0.10 4.46 3.69 -2.39 -0.01 4.45 16 36 H 0.25 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.02 1.29 5.82 -2.39 -0.01 1.28 16 46 H 0.01 0.52 7.50 -2.39 -0.02 0.50 16 47 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 48 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.05 1.98 6.07 -2.39 -0.01 1.97 16 Total: -1.00 -65.48 374.09 5.42 -60.06 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.96 Total: 19.90 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.83 Total: 8.61 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -3.29 Total: -107.65 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.10 Total: -27.11 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.48 5.42 -60.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753318097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.216 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds