Wall clock time and date at job start Tue Mar 31 2020 16:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46966 * 2 1 4 4 N 1.46502 * 109.47226 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00115 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00068 * 0.02562 * 5 4 3 7 7 C 1.38809 * 120.00241 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99620 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00539 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46923 * 59.99670 * 9 7 5 11 11 H 1.48499 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46767 * 300.00385 * 9 7 5 13 13 N 1.46498 * 109.47435 * 120.00163 * 2 1 3 14 14 C 1.34777 * 119.99837 * 295.81508 * 13 2 1 15 15 O 1.21272 * 120.00226 * 4.97079 * 14 13 2 16 16 C 1.50706 * 119.99631 * 184.97737 * 14 13 2 17 17 C 1.53002 * 109.46914 * 179.97438 * 16 14 13 18 18 O 1.42902 * 109.46961 * 179.97438 * 17 16 14 19 19 C 1.35896 * 116.99699 * 179.97438 * 18 17 16 20 20 C 1.38737 * 120.05919 * 359.72267 * 19 18 17 21 21 C 1.38146 * 119.94302 * 179.74314 * 20 19 18 22 22 C 1.38267 * 120.05607 * 0.51465 * 21 20 19 23 23 C 1.38261 * 120.11180 * 359.76322 * 22 21 20 24 24 C 1.38144 * 120.05669 * 359.97438 * 23 22 21 25 25 C 1.52995 * 109.46969 * 240.00286 * 2 1 3 26 26 C 1.53005 * 117.49912 * 12.72493 * 25 2 1 27 27 C 1.53007 * 117.50045 * 304.06542 * 25 2 1 28 28 H 1.08999 * 109.46573 * 299.99595 * 1 2 3 29 29 H 1.09006 * 109.46681 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47577 * 59.99778 * 1 2 3 31 31 H 1.08999 * 109.47573 * 300.00361 * 3 2 1 32 32 H 1.09009 * 109.47076 * 60.00215 * 3 2 1 33 33 H 0.96997 * 119.99730 * 0.02562 * 4 3 2 34 34 H 0.97003 * 119.99490 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99792 * 115.80660 * 13 2 1 36 36 H 1.09004 * 109.47125 * 299.99123 * 16 14 13 37 37 H 1.08996 * 109.47015 * 59.99564 * 16 14 13 38 38 H 1.08995 * 109.46816 * 299.99565 * 17 16 14 39 39 H 1.09004 * 109.47314 * 59.99793 * 17 16 14 40 40 H 1.07997 * 120.02349 * 0.02562 * 20 19 18 41 41 H 1.08003 * 119.97161 * 180.27592 * 21 20 19 42 42 H 1.08003 * 119.94098 * 179.74278 * 22 21 20 43 43 H 1.08000 * 119.97287 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.03003 * 179.97438 * 24 23 22 45 45 H 1.09004 * 115.55373 * 158.39380 * 25 2 1 46 46 H 1.08999 * 117.49848 * 359.97438 * 26 25 2 47 47 H 1.08998 * 117.50147 * 145.02003 * 26 25 2 48 48 H 1.08996 * 117.49865 * 214.98186 * 27 25 2 49 49 H 1.09003 * 117.49715 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 2.6284 -0.0013 6 1 3.6496 3.5638 -0.0009 7 6 5.5777 2.6285 -0.0024 8 7 6.2359 1.4886 -0.0033 9 14 6.5118 4.2463 -0.0025 10 1 6.1540 5.0245 1.2105 11 1 7.9718 3.9749 -0.0044 12 1 6.1520 5.0254 -1.2144 13 7 2.0184 -0.6906 1.1961 14 6 1.7639 -0.1831 2.4184 15 8 1.0553 0.7943 2.5337 16 6 2.3600 -0.8301 3.6420 17 6 1.9183 -0.0639 4.8905 18 8 2.4830 -0.6778 6.0508 19 6 2.1873 -0.1154 7.2521 20 6 1.3750 1.0077 7.3125 21 6 1.0716 1.5743 8.5353 22 6 1.5853 1.0293 9.6976 23 6 2.3997 -0.0864 9.6397 24 6 2.7018 -0.6600 8.4198 25 6 2.0400 -0.7212 -1.2492 26 6 1.0273 -1.0159 -2.3577 27 6 1.5587 -2.1546 -1.4835 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.9900 0.6025 -0.0013 34 1 7.2059 1.4887 -0.0045 35 1 2.5249 -1.5132 1.1083 36 1 2.0187 -1.8631 3.7096 37 1 3.4474 -0.8107 3.5700 38 1 2.2599 0.9689 4.8227 39 1 0.8308 -0.0829 4.9627 40 1 0.9766 1.4358 6.4046 41 1 0.4356 2.4459 8.5832 42 1 1.3503 1.4763 10.6523 43 1 2.8001 -0.5100 10.5489 44 1 3.3384 -1.5313 8.3750 45 1 3.0587 -0.4768 -1.5503 46 1 -0.0023 -0.6964 -2.1967 47 1 1.3799 -0.9658 -3.3879 48 1 2.2607 -2.8531 -1.9388 49 1 0.8791 -2.5839 -0.7473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753528389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:05 Heat of formation + Delta-G solvation = -9.640635 kcal Electronic energy + Delta-G solvation = -28598.820099 eV Core-core repulsion = 24720.518800 eV Total energy + Delta-G solvation = -3878.301299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.33655 -39.93184 -37.99971 -37.32139 -34.67136 -33.46870 -32.33983 -31.18193 -30.86089 -29.81665 -29.25432 -25.91707 -24.85309 -23.47777 -22.59611 -22.36798 -22.06367 -21.70921 -19.90987 -18.80470 -18.45480 -17.15439 -16.93144 -16.32424 -16.22321 -15.86416 -15.44893 -15.18501 -14.74415 -14.55980 -14.47680 -13.99730 -13.59016 -13.42696 -13.38614 -13.31401 -12.98469 -12.63460 -12.36537 -12.14195 -12.03550 -11.82420 -11.75957 -11.68478 -11.36802 -11.07085 -10.86463 -10.82545 -10.79188 -10.76500 -10.71640 -10.19699 -10.11047 -9.82979 -9.65651 -9.35872 -9.11758 -8.77324 -8.60351 -8.28502 -6.83353 -5.73058 -2.99242 1.22717 1.34721 2.83238 3.01315 3.46779 3.50945 3.52225 3.60674 3.69048 4.13105 4.63190 4.67046 4.77070 4.78354 4.86574 4.98738 5.01087 5.06881 5.12075 5.19165 5.25506 5.30162 5.34889 5.43344 5.47902 5.55347 5.62770 5.70768 5.76747 5.79212 5.84061 5.89036 5.96233 6.04268 6.20300 6.22058 6.24313 6.27251 6.30698 6.41147 6.42595 6.56841 6.67422 6.69134 6.89854 7.11799 7.35801 7.74796 7.88216 8.46681 8.57119 9.58112 10.15988 10.52052 11.49988 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008837 B = 0.003267 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.564329 B = 8569.635638 C =10785.502354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.203 3.797 3 C 0.142 3.858 4 N -0.726 5.726 5 C -0.231 4.231 6 H 0.067 0.933 7 C -0.015 4.015 8 N -0.936 5.936 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.708 5.708 14 C 0.530 3.470 15 O -0.538 6.538 16 C -0.141 4.141 17 C 0.078 3.922 18 O -0.317 6.317 19 C 0.136 3.864 20 C -0.207 4.207 21 C -0.080 4.080 22 C -0.164 4.164 23 C -0.084 4.084 24 C -0.156 4.156 25 C -0.149 4.149 26 C -0.173 4.173 27 C -0.184 4.184 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.048 0.952 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.398 0.602 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 -9.433 10.585 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.117 3.883 3 C 0.014 3.986 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.085 0.915 7 C -0.210 4.210 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.359 5.359 14 C 0.316 3.684 15 O -0.416 6.416 16 C -0.181 4.181 17 C 0.002 3.998 18 O -0.231 6.231 19 C 0.091 3.909 20 C -0.226 4.226 21 C -0.099 4.099 22 C -0.183 4.183 23 C -0.102 4.102 24 C -0.175 4.175 25 C -0.168 4.168 26 C -0.210 4.210 27 C -0.221 4.221 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.216 0.784 34 H 0.063 0.937 35 H 0.232 0.768 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.111 0.889 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.333 -8.703 10.598 18.443 hybrid contribution 1.063 0.418 -0.237 1.167 sum -11.270 -8.284 10.361 17.407 Atomic orbital electron populations 1.22278 0.94883 1.01507 1.03357 1.20028 0.92925 0.93239 0.82094 1.21084 0.86492 0.91642 0.99409 1.42231 0.99154 1.06167 1.89474 1.19186 0.89007 0.86204 1.41885 0.91457 1.24667 0.96281 0.96671 1.03407 1.69637 1.06706 1.23821 1.58412 0.86297 0.78946 0.83332 0.77830 1.21388 1.21757 1.21378 1.45859 1.56964 1.27944 1.05096 1.19942 0.80368 0.83836 0.84206 1.90638 1.38077 1.26350 1.86491 1.21469 1.04177 1.00962 0.91499 1.22446 0.98123 0.97282 0.81913 1.85976 1.70034 1.54305 1.12797 1.19028 0.94201 0.92193 0.85498 1.21415 1.03305 0.98240 0.99631 1.20978 0.98138 0.98861 0.91879 1.21044 1.00830 0.98069 0.98326 1.20938 0.96994 0.95461 0.96816 1.20459 1.04147 1.02773 0.90084 1.22577 1.00761 0.96919 0.96543 1.23061 0.99284 1.02773 0.95915 1.22955 1.04011 0.91560 1.03535 0.90530 0.92981 0.91639 0.95917 0.93379 0.78401 0.93657 0.76779 0.88361 0.87341 0.90684 0.91272 0.85009 0.85844 0.86108 0.85547 0.85258 0.85979 0.88276 0.88889 0.88924 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 7.10 37.16 0.26 -2.02 16 2 C 0.20 3.25 0.54 -131.82 -0.07 3.17 16 3 C 0.14 2.99 4.90 -4.04 -0.02 2.97 16 4 N -0.73 -18.16 5.04 -59.91 -0.30 -18.46 16 5 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 8 N -0.94 -28.00 13.06 55.49 0.72 -27.28 16 9 Si 0.90 22.84 29.55 -169.99 -5.02 17.81 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.71 -10.57 4.74 -47.61 -0.23 -10.80 16 14 C 0.53 8.47 7.24 -10.98 -0.08 8.39 16 15 O -0.54 -10.15 12.22 5.56 0.07 -10.08 16 16 C -0.14 -1.85 6.07 -27.88 -0.17 -2.01 16 17 C 0.08 1.06 4.03 37.16 0.15 1.21 16 18 O -0.32 -4.43 10.14 -19.41 -0.20 -4.62 16 19 C 0.14 1.81 6.69 -39.21 -0.26 1.55 16 20 C -0.21 -2.59 9.04 -39.43 -0.36 -2.95 16 21 C -0.08 -0.87 10.04 -39.60 -0.40 -1.26 16 22 C -0.16 -1.61 10.04 -39.56 -0.40 -2.01 16 23 C -0.08 -0.83 10.04 -39.61 -0.40 -1.22 16 24 C -0.16 -1.80 9.99 -39.43 -0.39 -2.19 16 25 C -0.15 -2.21 4.86 -90.62 -0.44 -2.65 16 26 C -0.17 -2.12 9.64 -26.69 -0.26 -2.38 16 27 C -0.18 -2.12 9.72 -26.69 -0.26 -2.38 16 28 H 0.08 1.21 6.31 -51.93 -0.33 0.89 16 29 H 0.05 0.64 6.99 -51.93 -0.36 0.28 16 30 H 0.06 0.86 6.78 -51.93 -0.35 0.51 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 1.12 6.04 -51.92 -0.31 0.81 16 33 H 0.38 9.78 6.62 -40.82 -0.27 9.51 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.40 5.10 8.38 -40.82 -0.34 4.76 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.07 1.15 7.61 -51.93 -0.39 0.75 16 39 H 0.07 0.90 7.63 -51.93 -0.40 0.50 16 40 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 42 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 45 H 0.12 2.20 7.08 -51.93 -0.37 1.84 16 46 H 0.10 1.13 5.88 -51.93 -0.31 0.82 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.09 0.97 7.35 -51.93 -0.38 0.58 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -32.66 393.55 -9.86 -42.52 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -7.50 Total: 16.01 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.33 Total: -11.03 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.20 Total: -56.54 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.13 Total: -14.70 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.66 -9.86 -42.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753528389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.875 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds