Wall clock time and date at job start Tue Mar 31 2020 16:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46966 * 2 1 4 4 N 1.46502 * 109.47226 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00115 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00068 * 0.02562 * 5 4 3 7 7 C 1.38809 * 120.00241 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99620 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00539 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46923 * 59.99670 * 9 7 5 11 11 H 1.48499 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46767 * 300.00385 * 9 7 5 13 13 N 1.46498 * 109.47435 * 120.00163 * 2 1 3 14 14 C 1.34777 * 119.99837 * 295.81508 * 13 2 1 15 15 O 1.21272 * 120.00226 * 4.97079 * 14 13 2 16 16 C 1.50706 * 119.99631 * 184.97737 * 14 13 2 17 17 C 1.53002 * 109.46914 * 179.97438 * 16 14 13 18 18 O 1.42902 * 109.46961 * 179.97438 * 17 16 14 19 19 C 1.35896 * 116.99699 * 179.97438 * 18 17 16 20 20 C 1.38737 * 120.05919 * 359.72267 * 19 18 17 21 21 C 1.38146 * 119.94302 * 179.74314 * 20 19 18 22 22 C 1.38267 * 120.05607 * 0.51465 * 21 20 19 23 23 C 1.38261 * 120.11180 * 359.76322 * 22 21 20 24 24 C 1.38144 * 120.05669 * 359.97438 * 23 22 21 25 25 C 1.52995 * 109.46969 * 240.00286 * 2 1 3 26 26 C 1.53005 * 117.49912 * 12.72493 * 25 2 1 27 27 C 1.53007 * 117.50045 * 304.06542 * 25 2 1 28 28 H 1.08999 * 109.46573 * 299.99595 * 1 2 3 29 29 H 1.09006 * 109.46681 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47577 * 59.99778 * 1 2 3 31 31 H 1.08999 * 109.47573 * 300.00361 * 3 2 1 32 32 H 1.09009 * 109.47076 * 60.00215 * 3 2 1 33 33 H 0.96997 * 119.99730 * 0.02562 * 4 3 2 34 34 H 0.97003 * 119.99490 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99792 * 115.80660 * 13 2 1 36 36 H 1.09004 * 109.47125 * 299.99123 * 16 14 13 37 37 H 1.08996 * 109.47015 * 59.99564 * 16 14 13 38 38 H 1.08995 * 109.46816 * 299.99565 * 17 16 14 39 39 H 1.09004 * 109.47314 * 59.99793 * 17 16 14 40 40 H 1.07997 * 120.02349 * 0.02562 * 20 19 18 41 41 H 1.08003 * 119.97161 * 180.27592 * 21 20 19 42 42 H 1.08003 * 119.94098 * 179.74278 * 22 21 20 43 43 H 1.08000 * 119.97287 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.03003 * 179.97438 * 24 23 22 45 45 H 1.09004 * 115.55373 * 158.39380 * 25 2 1 46 46 H 1.08999 * 117.49848 * 359.97438 * 26 25 2 47 47 H 1.08998 * 117.50147 * 145.02003 * 26 25 2 48 48 H 1.08996 * 117.49865 * 214.98186 * 27 25 2 49 49 H 1.09003 * 117.49715 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 2.6284 -0.0013 6 1 3.6496 3.5638 -0.0009 7 6 5.5777 2.6285 -0.0024 8 7 6.2359 1.4886 -0.0033 9 14 6.5118 4.2463 -0.0025 10 1 6.1540 5.0245 1.2105 11 1 7.9718 3.9749 -0.0044 12 1 6.1520 5.0254 -1.2144 13 7 2.0184 -0.6906 1.1961 14 6 1.7639 -0.1831 2.4184 15 8 1.0553 0.7943 2.5337 16 6 2.3600 -0.8301 3.6420 17 6 1.9183 -0.0639 4.8905 18 8 2.4830 -0.6778 6.0508 19 6 2.1873 -0.1154 7.2521 20 6 1.3750 1.0077 7.3125 21 6 1.0716 1.5743 8.5353 22 6 1.5853 1.0293 9.6976 23 6 2.3997 -0.0864 9.6397 24 6 2.7018 -0.6600 8.4198 25 6 2.0400 -0.7212 -1.2492 26 6 1.0273 -1.0159 -2.3577 27 6 1.5587 -2.1546 -1.4835 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.9900 0.6025 -0.0013 34 1 7.2059 1.4887 -0.0045 35 1 2.5249 -1.5132 1.1083 36 1 2.0187 -1.8631 3.7096 37 1 3.4474 -0.8107 3.5700 38 1 2.2599 0.9689 4.8227 39 1 0.8308 -0.0829 4.9627 40 1 0.9766 1.4358 6.4046 41 1 0.4356 2.4459 8.5832 42 1 1.3503 1.4763 10.6523 43 1 2.8001 -0.5100 10.5489 44 1 3.3384 -1.5313 8.3750 45 1 3.0587 -0.4768 -1.5503 46 1 -0.0023 -0.6964 -2.1967 47 1 1.3799 -0.9658 -3.3879 48 1 2.2607 -2.8531 -1.9388 49 1 0.8791 -2.5839 -0.7473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753528389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:04 Heat of formation + Delta-G solvation = -29.608783 kcal Electronic energy + Delta-G solvation = -28599.685983 eV Core-core repulsion = 24720.518800 eV Total energy + Delta-G solvation = -3879.167183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52127 -40.97766 -39.15886 -38.29766 -36.37038 -34.99806 -33.60699 -32.75015 -31.89283 -31.11740 -30.30032 -27.59178 -26.08762 -24.87036 -24.08415 -23.45308 -23.12790 -22.64688 -21.10613 -20.14491 -19.44220 -19.22406 -18.08395 -17.43086 -17.24886 -16.89753 -16.70703 -16.52549 -16.22112 -15.94932 -15.54783 -15.33912 -15.00997 -14.83199 -14.42937 -14.35587 -14.29709 -13.99017 -13.73795 -13.65233 -13.20553 -13.09738 -12.89458 -12.78109 -12.75660 -12.49105 -12.44521 -12.25457 -12.05217 -12.01877 -11.80283 -11.76779 -11.74516 -11.24906 -11.06856 -10.92093 -10.55896 -9.96624 -9.93747 -9.19921 -8.94448 -7.96169 -5.21981 0.37938 0.47575 1.43021 1.45472 1.51563 1.64173 1.84344 2.49855 2.55486 2.83668 3.07123 3.36529 3.59803 3.66412 3.85487 3.88511 3.92456 3.95623 3.97878 4.06417 4.18069 4.24470 4.25354 4.33556 4.45642 4.47485 4.51371 4.64888 4.69953 4.72306 4.79661 4.80961 4.88210 4.92244 4.99655 5.03507 5.08005 5.14225 5.30053 5.33455 5.36207 5.44457 5.47885 5.48407 5.58750 5.69421 5.85175 6.26456 6.38041 6.66615 7.32981 7.34427 8.09124 8.37592 9.26411 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008837 B = 0.003267 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.564329 B = 8569.635638 C =10785.502354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.212 3.788 3 C 0.143 3.857 4 N -0.728 5.728 5 C -0.245 4.245 6 H 0.062 0.938 7 C -0.067 4.067 8 N -0.962 5.962 9 Si 0.966 3.034 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.702 5.702 14 C 0.523 3.477 15 O -0.572 6.572 16 C -0.132 4.132 17 C 0.086 3.914 18 O -0.326 6.326 19 C 0.106 3.894 20 C -0.226 4.226 21 C -0.089 4.089 22 C -0.162 4.162 23 C -0.082 4.082 24 C -0.167 4.167 25 C -0.176 4.176 26 C -0.165 4.165 27 C -0.154 4.154 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.016 0.984 32 H 0.023 0.977 33 H 0.378 0.622 34 H 0.251 0.749 35 H 0.410 0.590 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.139 0.861 45 H 0.085 0.915 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.103 0.897 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.811 -10.701 11.498 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 C 0.015 3.985 4 N -0.372 5.372 5 C -0.377 4.377 6 H 0.080 0.920 7 C -0.260 4.260 8 N -0.613 5.613 9 Si 0.795 3.205 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.353 5.353 14 C 0.310 3.690 15 O -0.452 6.452 16 C -0.171 4.171 17 C 0.010 3.990 18 O -0.240 6.240 19 C 0.061 3.939 20 C -0.245 4.245 21 C -0.107 4.107 22 C -0.180 4.180 23 C -0.099 4.099 24 C -0.185 4.185 25 C -0.195 4.195 26 C -0.202 4.202 27 C -0.191 4.191 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.211 0.789 34 H 0.060 0.940 35 H 0.246 0.754 36 H 0.151 0.849 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.159 0.841 42 H 0.168 0.832 43 H 0.176 0.824 44 H 0.157 0.843 45 H 0.103 0.897 46 H 0.131 0.869 47 H 0.115 0.885 48 H 0.122 0.878 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.166 -9.987 11.505 20.135 hybrid contribution 1.284 0.855 -0.462 1.610 sum -11.882 -9.131 11.043 18.615 Atomic orbital electron populations 1.22195 0.92906 1.03086 1.02872 1.19822 0.94148 0.90267 0.83189 1.21123 0.84298 0.95426 0.97643 1.42282 1.00722 1.05013 1.89140 1.19494 0.89677 0.87195 1.41371 0.92016 1.25390 0.97025 0.99793 1.03760 1.69772 1.06575 1.25490 1.59420 0.85331 0.77473 0.79768 0.77920 1.21176 1.21612 1.20496 1.45840 1.56701 1.28138 1.04604 1.20450 0.79910 0.83457 0.85159 1.90627 1.39674 1.27820 1.87031 1.21412 1.03475 1.02451 0.89796 1.22266 0.98209 0.96008 0.82471 1.85936 1.70476 1.54509 1.13080 1.19376 0.95659 0.93220 0.85678 1.21502 1.04046 0.98698 1.00259 1.21290 0.98379 0.99434 0.91623 1.21456 0.99721 0.97678 0.99109 1.21360 0.96227 0.95096 0.97249 1.20757 1.04286 1.03296 0.90176 1.22252 0.99701 1.00297 0.97220 1.23192 0.99081 1.02455 0.95490 1.23048 1.03347 0.89876 1.02845 0.92501 0.90238 0.90672 0.96605 0.95883 0.78903 0.94009 0.75405 0.84853 0.87914 0.93367 0.90944 0.86007 0.84054 0.83152 0.82371 0.84277 0.89717 0.86911 0.88451 0.87837 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 7.10 71.98 0.51 -3.60 16 2 C 0.21 6.77 0.54 3.60 0.00 6.77 16 3 C 0.14 6.23 4.90 86.38 0.42 6.65 16 4 N -0.73 -37.77 5.04 -343.45 -1.73 -39.50 16 5 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 6 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 7 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 8 N -0.96 -58.56 13.06 21.65 0.28 -58.28 16 9 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 N -0.70 -20.86 4.74 -422.94 -2.00 -22.86 16 14 C 0.52 17.01 7.24 87.66 0.63 17.64 16 15 O -0.57 -22.48 12.22 -3.01 -0.04 -22.51 16 16 C -0.13 -3.47 6.07 29.85 0.18 -3.29 16 17 C 0.09 2.47 4.03 71.98 0.29 2.76 16 18 O -0.33 -9.36 10.14 -92.38 -0.94 -10.29 16 19 C 0.11 2.86 6.69 22.51 0.15 3.01 16 20 C -0.23 -5.85 9.04 22.37 0.20 -5.65 16 21 C -0.09 -1.86 10.04 22.25 0.22 -1.63 16 22 C -0.16 -2.80 10.04 22.28 0.22 -2.58 16 23 C -0.08 -1.42 10.04 22.25 0.22 -1.20 16 24 C -0.17 -3.71 9.99 22.37 0.22 -3.49 16 25 C -0.18 -5.09 4.86 -10.79 -0.05 -5.15 16 26 C -0.16 -3.68 9.64 30.62 0.30 -3.38 16 27 C -0.15 -3.12 9.72 30.62 0.30 -2.82 16 28 H 0.06 1.79 6.31 -2.39 -0.02 1.78 16 29 H 0.08 1.71 6.99 -2.38 -0.02 1.70 16 30 H 0.07 1.86 6.78 -2.39 -0.02 1.85 16 31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.02 1.14 6.04 -2.38 -0.01 1.12 16 33 H 0.38 20.05 6.62 -92.71 -0.61 19.44 16 34 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.41 10.14 8.38 -92.71 -0.78 9.37 16 36 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.05 1.61 7.61 -2.39 -0.02 1.59 16 39 H 0.07 1.99 7.63 -2.38 -0.02 1.97 16 40 H 0.12 3.26 6.30 -2.91 -0.02 3.24 16 41 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 45 H 0.08 3.14 7.08 -2.39 -0.02 3.12 16 46 H 0.11 2.22 5.88 -2.39 -0.01 2.20 16 47 H 0.10 2.09 8.14 -2.39 -0.02 2.08 16 48 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.11 1.87 7.35 -2.39 -0.02 1.85 16 Total: -1.00 -72.98 393.55 2.32 -70.66 By element: Atomic # 1 Polarization: 46.47 SS G_CDS: -0.42 Total: 46.06 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.14 Total: -12.89 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -3.45 Total: -120.65 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.97 Total: -32.80 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -72.98 2.32 -70.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753528389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.054 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds