Wall clock time and date at job start Tue Mar 31 2020 16:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 N 1.46500 * 109.47030 * 300.00020 * 3 2 1 5 5 C 1.36937 * 120.00138 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00269 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00284 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47180 * 59.99840 * 9 7 5 11 11 H 1.48500 * 109.46983 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47249 * 299.99263 * 9 7 5 13 13 N 1.46494 * 109.47145 * 240.00201 * 2 1 3 14 14 C 1.34772 * 120.00318 * 183.95049 * 13 2 1 15 15 O 1.21290 * 119.99870 * 5.18818 * 14 13 2 16 16 C 1.50698 * 120.00296 * 185.19000 * 14 13 2 17 17 C 1.53005 * 109.47045 * 179.97438 * 16 14 13 18 18 O 1.42898 * 109.46898 * 179.97438 * 17 16 14 19 19 C 1.35899 * 117.00151 * 179.97438 * 18 17 16 20 20 C 1.38740 * 120.05102 * 359.73503 * 19 18 17 21 21 C 1.38149 * 119.94023 * 179.74160 * 20 19 18 22 22 C 1.38264 * 120.05445 * 0.50753 * 21 20 19 23 23 C 1.38265 * 120.11302 * 359.76222 * 22 21 20 24 24 C 1.38141 * 120.05748 * 359.97438 * 23 22 21 25 25 C 1.52998 * 109.47194 * 119.99556 * 2 1 3 26 26 C 1.53001 * 117.51697 * 348.45352 * 25 2 1 27 27 C 1.53005 * 117.49462 * 57.08212 * 25 2 1 28 28 H 1.09003 * 109.46706 * 300.00391 * 1 2 3 29 29 H 1.09000 * 109.47099 * 59.99667 * 1 2 3 30 30 H 1.08993 * 109.46980 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47388 * 59.99734 * 3 2 1 32 32 H 1.08993 * 109.47268 * 179.97438 * 3 2 1 33 33 H 0.96996 * 120.00435 * 359.97438 * 4 3 2 34 34 H 0.97008 * 119.99757 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99703 * 3.94030 * 13 2 1 36 36 H 1.09002 * 109.46756 * 299.99546 * 16 14 13 37 37 H 1.08998 * 109.47335 * 59.99839 * 16 14 13 38 38 H 1.08997 * 109.47243 * 300.00282 * 17 16 14 39 39 H 1.09006 * 109.46919 * 60.00182 * 17 16 14 40 40 H 1.07992 * 120.02855 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.96986 * 180.27052 * 21 20 19 42 42 H 1.08003 * 119.94508 * 179.74777 * 22 21 20 43 43 H 1.08006 * 119.97040 * 179.97438 * 23 22 21 44 44 H 1.07994 * 120.03039 * 179.97438 * 24 23 22 45 45 H 1.08999 * 115.55380 * 202.74664 * 25 2 1 46 46 H 1.09002 * 117.50163 * 214.96480 * 26 25 2 47 47 H 1.08997 * 117.50077 * 359.97438 * 26 25 2 48 48 H 1.08998 * 117.49808 * 359.97048 * 27 25 2 49 49 H 1.08998 * 117.49901 * 144.97755 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4132 6 1 2.5038 3.9689 -0.7023 7 6 1.4198 4.0985 -2.5463 8 7 0.6627 3.4590 -3.4124 9 14 1.8710 5.8869 -2.8419 10 1 3.3476 6.0166 -2.9310 11 1 1.2564 6.3490 -4.1123 12 1 1.3681 6.7167 -1.7177 13 7 2.0184 -0.6905 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1197 -0.5711 -0.4945 16 6 3.8517 -1.4883 -2.6524 17 6 5.3768 -1.5971 -2.5929 18 8 5.8612 -2.1708 -3.8086 19 6 7.2054 -2.3375 -3.9196 20 6 8.0413 -1.9514 -2.8818 21 6 9.4070 -2.1268 -2.9948 22 6 9.9416 -2.6768 -4.1452 23 6 9.1111 -3.0572 -5.1831 24 6 7.7444 -2.8889 -5.0728 25 6 2.0401 -0.7211 1.2493 26 6 1.0223 -1.0406 2.3461 27 6 1.5801 -2.1637 1.4694 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9943 1.6616 -1.8349 34 1 0.3393 3.9163 -4.2044 35 1 1.3899 -1.0088 -1.8629 36 1 3.4212 -2.4812 -2.7829 37 1 3.5655 -0.8550 -3.4921 38 1 5.8070 -0.6041 -2.4625 39 1 5.6633 -2.2303 -1.7531 40 1 7.6245 -1.5177 -1.9849 41 1 10.0578 -1.8305 -2.1855 42 1 11.0099 -2.8093 -4.2333 43 1 9.5312 -3.4862 -6.0808 44 1 7.0961 -3.1858 -5.8839 45 1 3.0518 -0.4623 1.5615 46 1 1.3644 -0.9920 3.3799 47 1 -0.0109 -0.7367 2.1780 48 1 0.9139 -2.5988 0.7245 49 1 2.2894 -2.8540 1.9261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753528398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:10 Heat of formation + Delta-G solvation = -10.412053 kcal Electronic energy + Delta-G solvation = -28578.808834 eV Core-core repulsion = 24700.474084 eV Total energy + Delta-G solvation = -3878.334751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.34116 -39.93740 -37.91400 -37.27551 -34.98720 -33.45217 -32.25798 -31.22521 -30.91784 -29.68359 -29.14929 -26.21365 -24.83712 -23.74887 -22.66616 -22.30725 -21.82271 -21.37577 -20.25566 -18.76896 -18.44935 -17.27217 -16.73377 -16.35436 -16.16164 -15.93627 -15.70770 -15.18156 -14.69521 -14.55437 -14.43971 -14.06648 -13.61149 -13.46033 -13.39346 -13.31264 -12.99465 -12.77781 -12.36148 -12.15360 -11.98111 -11.79659 -11.75289 -11.69168 -11.28365 -11.07909 -10.90402 -10.86943 -10.80200 -10.76884 -10.63023 -10.28418 -10.17423 -9.91263 -9.65741 -9.33295 -9.13787 -8.82523 -8.60768 -8.30544 -6.87681 -5.75695 -3.02300 1.20680 1.32730 2.84317 3.00154 3.45511 3.49758 3.50917 3.61049 3.67042 4.15229 4.57966 4.65256 4.75573 4.77533 4.86447 4.97137 4.99803 5.07492 5.11157 5.22098 5.25813 5.28392 5.34678 5.44301 5.47124 5.55049 5.60706 5.65694 5.74158 5.75757 5.82390 5.87037 5.93260 6.00393 6.19970 6.20541 6.21764 6.27182 6.28719 6.39182 6.51080 6.54274 6.60711 6.65459 6.86750 7.06408 7.33825 7.72452 7.86377 8.44049 8.57127 9.55493 10.12672 10.48501 11.47369 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008422 B = 0.003292 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.795755 B = 8502.637445 C =10926.997357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.201 3.799 3 C 0.147 3.853 4 N -0.726 5.726 5 C -0.233 4.233 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.936 5.936 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.287 1.287 13 N -0.707 5.707 14 C 0.531 3.469 15 O -0.539 6.539 16 C -0.142 4.142 17 C 0.078 3.922 18 O -0.317 6.317 19 C 0.136 3.864 20 C -0.208 4.208 21 C -0.081 4.081 22 C -0.164 4.164 23 C -0.084 4.084 24 C -0.156 4.156 25 C -0.141 4.141 26 C -0.183 4.183 27 C -0.175 4.175 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.037 0.963 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.398 0.602 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.632 -17.181 2.331 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.116 3.884 3 C 0.018 3.982 4 N -0.371 5.371 5 C -0.365 4.365 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.585 5.585 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.213 1.213 13 N -0.358 5.358 14 C 0.317 3.683 15 O -0.417 6.417 16 C -0.182 4.182 17 C 0.003 3.997 18 O -0.231 6.231 19 C 0.091 3.909 20 C -0.226 4.226 21 C -0.099 4.099 22 C -0.183 4.183 23 C -0.102 4.102 24 C -0.174 4.174 25 C -0.160 4.160 26 C -0.221 4.221 27 C -0.212 4.212 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.133 0.867 46 H 0.108 0.892 47 H 0.118 0.882 48 H 0.108 0.892 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.083 -16.799 2.841 19.308 hybrid contribution -0.195 0.887 -0.597 1.087 sum 8.888 -15.913 2.244 18.364 Atomic orbital electron populations 1.22132 0.93547 1.01323 1.04243 1.20027 0.93483 0.92311 0.82621 1.20997 0.97806 0.88246 0.91120 1.42252 1.61334 1.10486 1.23042 1.19183 1.25240 0.87672 1.04370 0.91418 1.24676 1.00661 0.98199 0.97454 1.69630 1.39597 1.36172 1.13148 0.86285 0.77873 0.85122 0.77043 1.21366 1.21730 1.21337 1.45899 1.06845 1.59244 1.23796 1.19926 0.82630 0.78021 0.87693 1.90653 1.55770 1.51367 1.43894 1.21472 0.94710 1.03681 0.98307 1.22442 0.93666 0.99036 0.84575 1.85980 1.19202 1.77904 1.40019 1.19030 0.82484 0.95038 0.94378 1.21411 0.94628 1.06574 1.00009 1.20976 0.94351 0.96915 0.97624 1.21047 0.99816 1.02912 0.94486 1.20944 0.92440 0.98188 0.98619 1.20460 0.95362 1.04541 0.97082 1.22595 0.99801 0.97159 0.96485 1.23142 0.99530 1.03511 0.95902 1.22793 1.03681 0.91664 1.03100 0.90686 0.90592 0.92838 0.95688 0.94469 0.78411 0.93601 0.76791 0.88326 0.87369 0.90800 0.91259 0.85036 0.85852 0.86099 0.85531 0.85242 0.86678 0.89223 0.88192 0.89240 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 7.04 37.16 0.26 -1.96 16 2 C 0.20 3.19 0.54 -131.82 -0.07 3.12 16 3 C 0.15 3.05 5.02 -4.04 -0.02 3.03 16 4 N -0.73 -17.96 5.17 -59.91 -0.31 -18.27 16 5 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.94 -27.76 13.06 55.49 0.72 -27.04 16 9 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.71 -10.46 4.71 -47.61 -0.22 -10.69 16 14 C 0.53 8.34 7.24 -10.99 -0.08 8.26 16 15 O -0.54 -9.95 12.80 5.55 0.07 -9.88 16 16 C -0.14 -1.83 6.07 -27.88 -0.17 -2.00 16 17 C 0.08 1.05 4.03 37.16 0.15 1.20 16 18 O -0.32 -4.36 10.14 -19.42 -0.20 -4.55 16 19 C 0.14 1.77 6.69 -39.21 -0.26 1.51 16 20 C -0.21 -2.53 9.04 -39.43 -0.36 -2.89 16 21 C -0.08 -0.85 10.04 -39.60 -0.40 -1.24 16 22 C -0.16 -1.57 10.04 -39.56 -0.40 -1.97 16 23 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 24 C -0.16 -1.77 9.99 -39.44 -0.39 -2.16 16 25 C -0.14 -2.04 4.05 -90.62 -0.37 -2.41 16 26 C -0.18 -2.19 9.61 -26.73 -0.26 -2.45 16 27 C -0.18 -2.10 9.81 -26.73 -0.26 -2.36 16 28 H 0.07 1.06 6.84 -51.93 -0.36 0.70 16 29 H 0.08 1.25 6.86 -51.93 -0.36 0.89 16 30 H 0.05 0.63 7.01 -51.93 -0.36 0.26 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.86 6.65 -51.93 -0.35 0.52 16 33 H 0.38 9.60 6.35 -40.82 -0.26 9.34 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.40 5.04 8.48 -40.82 -0.35 4.70 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.07 1.09 7.61 -51.93 -0.39 0.70 16 39 H 0.07 0.89 7.63 -51.93 -0.40 0.49 16 40 H 0.13 1.57 6.30 -52.49 -0.33 1.24 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.91 7.18 -51.93 -0.37 1.54 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.10 1.14 5.87 -51.93 -0.31 0.83 16 48 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 49 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -32.48 394.77 -9.84 -42.32 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -7.56 Total: 15.27 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.27 Total: -10.73 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.19 Total: -56.00 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.13 Total: -14.43 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.48 -9.84 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753528398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.906 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds