Wall clock time and date at job start Tue Mar 31 2020 16:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 N 1.46500 * 109.47030 * 300.00020 * 3 2 1 5 5 C 1.36937 * 120.00138 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00269 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00284 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47180 * 59.99840 * 9 7 5 11 11 H 1.48500 * 109.46983 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47249 * 299.99263 * 9 7 5 13 13 N 1.46494 * 109.47145 * 240.00201 * 2 1 3 14 14 C 1.34772 * 120.00318 * 183.95049 * 13 2 1 15 15 O 1.21290 * 119.99870 * 5.18818 * 14 13 2 16 16 C 1.50698 * 120.00296 * 185.19000 * 14 13 2 17 17 C 1.53005 * 109.47045 * 179.97438 * 16 14 13 18 18 O 1.42898 * 109.46898 * 179.97438 * 17 16 14 19 19 C 1.35899 * 117.00151 * 179.97438 * 18 17 16 20 20 C 1.38740 * 120.05102 * 359.73503 * 19 18 17 21 21 C 1.38149 * 119.94023 * 179.74160 * 20 19 18 22 22 C 1.38264 * 120.05445 * 0.50753 * 21 20 19 23 23 C 1.38265 * 120.11302 * 359.76222 * 22 21 20 24 24 C 1.38141 * 120.05748 * 359.97438 * 23 22 21 25 25 C 1.52998 * 109.47194 * 119.99556 * 2 1 3 26 26 C 1.53001 * 117.51697 * 348.45352 * 25 2 1 27 27 C 1.53005 * 117.49462 * 57.08212 * 25 2 1 28 28 H 1.09003 * 109.46706 * 300.00391 * 1 2 3 29 29 H 1.09000 * 109.47099 * 59.99667 * 1 2 3 30 30 H 1.08993 * 109.46980 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47388 * 59.99734 * 3 2 1 32 32 H 1.08993 * 109.47268 * 179.97438 * 3 2 1 33 33 H 0.96996 * 120.00435 * 359.97438 * 4 3 2 34 34 H 0.97008 * 119.99757 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99703 * 3.94030 * 13 2 1 36 36 H 1.09002 * 109.46756 * 299.99546 * 16 14 13 37 37 H 1.08998 * 109.47335 * 59.99839 * 16 14 13 38 38 H 1.08997 * 109.47243 * 300.00282 * 17 16 14 39 39 H 1.09006 * 109.46919 * 60.00182 * 17 16 14 40 40 H 1.07992 * 120.02855 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.96986 * 180.27052 * 21 20 19 42 42 H 1.08003 * 119.94508 * 179.74777 * 22 21 20 43 43 H 1.08006 * 119.97040 * 179.97438 * 23 22 21 44 44 H 1.07994 * 120.03039 * 179.97438 * 24 23 22 45 45 H 1.08999 * 115.55380 * 202.74664 * 25 2 1 46 46 H 1.09002 * 117.50163 * 214.96480 * 26 25 2 47 47 H 1.08997 * 117.50077 * 359.97438 * 26 25 2 48 48 H 1.08998 * 117.49808 * 359.97048 * 27 25 2 49 49 H 1.08998 * 117.49901 * 144.97755 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4132 6 1 2.5038 3.9689 -0.7023 7 6 1.4198 4.0985 -2.5463 8 7 0.6627 3.4590 -3.4124 9 14 1.8710 5.8869 -2.8419 10 1 3.3476 6.0166 -2.9310 11 1 1.2564 6.3490 -4.1123 12 1 1.3681 6.7167 -1.7177 13 7 2.0184 -0.6905 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1197 -0.5711 -0.4945 16 6 3.8517 -1.4883 -2.6524 17 6 5.3768 -1.5971 -2.5929 18 8 5.8612 -2.1708 -3.8086 19 6 7.2054 -2.3375 -3.9196 20 6 8.0413 -1.9514 -2.8818 21 6 9.4070 -2.1268 -2.9948 22 6 9.9416 -2.6768 -4.1452 23 6 9.1111 -3.0572 -5.1831 24 6 7.7444 -2.8889 -5.0728 25 6 2.0401 -0.7211 1.2493 26 6 1.0223 -1.0406 2.3461 27 6 1.5801 -2.1637 1.4694 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9943 1.6616 -1.8349 34 1 0.3393 3.9163 -4.2044 35 1 1.3899 -1.0088 -1.8629 36 1 3.4212 -2.4812 -2.7829 37 1 3.5655 -0.8550 -3.4921 38 1 5.8070 -0.6041 -2.4625 39 1 5.6633 -2.2303 -1.7531 40 1 7.6245 -1.5177 -1.9849 41 1 10.0578 -1.8305 -2.1855 42 1 11.0099 -2.8093 -4.2333 43 1 9.5312 -3.4862 -6.0808 44 1 7.0961 -3.1858 -5.8839 45 1 3.0518 -0.4623 1.5615 46 1 1.3644 -0.9920 3.3799 47 1 -0.0109 -0.7367 2.1780 48 1 0.9139 -2.5988 0.7245 49 1 2.2894 -2.8540 1.9261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753528398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:08 Heat of formation + Delta-G solvation = -30.082264 kcal Electronic energy + Delta-G solvation = -28579.661799 eV Core-core repulsion = 24700.474084 eV Total energy + Delta-G solvation = -3879.187715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.49528 -40.97576 -39.04370 -38.26525 -36.59834 -35.03046 -33.53126 -32.76875 -31.87689 -30.92320 -30.29890 -27.77394 -26.08310 -25.40955 -23.59448 -23.30836 -22.89093 -22.70277 -21.43387 -20.09369 -19.43355 -19.23146 -17.85392 -17.46293 -17.28726 -16.86764 -16.79897 -16.68620 -16.24015 -15.85821 -15.46250 -15.37156 -15.02803 -14.76992 -14.57722 -14.44526 -14.31440 -14.03693 -13.61670 -13.55931 -13.26597 -12.98909 -12.90473 -12.77881 -12.73805 -12.49058 -12.43673 -12.20026 -12.09940 -12.00087 -11.80646 -11.75025 -11.73002 -11.37191 -11.03824 -10.96739 -10.53439 -9.96955 -9.92324 -9.20289 -8.97105 -7.96307 -5.22580 0.37570 0.47236 1.44482 1.46654 1.52747 1.68221 1.83769 2.50647 2.55892 2.83322 3.10692 3.36899 3.54710 3.64634 3.88092 3.89981 3.93519 3.97264 4.02769 4.11504 4.19816 4.24237 4.26774 4.34336 4.35346 4.46533 4.51587 4.53956 4.67584 4.71137 4.79134 4.80851 4.89471 4.93148 4.99925 5.03109 5.07671 5.14556 5.30442 5.31804 5.35839 5.42928 5.46361 5.47546 5.58461 5.68554 5.84861 6.26450 6.37834 6.66311 7.34110 7.35569 8.07838 8.37122 9.26156 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008422 B = 0.003292 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.795755 B = 8502.637445 C =10926.997357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.210 3.790 3 C 0.149 3.851 4 N -0.729 5.729 5 C -0.247 4.247 6 H 0.062 0.938 7 C -0.066 4.066 8 N -0.961 5.961 9 Si 0.966 3.034 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.702 5.702 14 C 0.524 3.476 15 O -0.571 6.571 16 C -0.132 4.132 17 C 0.087 3.913 18 O -0.326 6.326 19 C 0.106 3.894 20 C -0.226 4.226 21 C -0.089 4.089 22 C -0.162 4.162 23 C -0.082 4.082 24 C -0.167 4.167 25 C -0.165 4.165 26 C -0.170 4.170 27 C -0.157 4.157 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.020 0.980 32 H 0.008 0.992 33 H 0.379 0.621 34 H 0.252 0.748 35 H 0.410 0.590 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.122 0.878 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.139 0.861 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.104 0.896 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 -18.710 2.099 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.124 3.876 3 C 0.021 3.979 4 N -0.373 5.373 5 C -0.379 4.379 6 H 0.080 0.920 7 C -0.259 4.259 8 N -0.611 5.611 9 Si 0.795 3.205 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.353 5.353 14 C 0.312 3.688 15 O -0.451 6.451 16 C -0.172 4.172 17 C 0.011 3.989 18 O -0.240 6.240 19 C 0.061 3.939 20 C -0.245 4.245 21 C -0.107 4.107 22 C -0.180 4.180 23 C -0.099 4.099 24 C -0.185 4.185 25 C -0.184 4.184 26 C -0.207 4.207 27 C -0.194 4.194 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.038 0.962 32 H 0.026 0.974 33 H 0.213 0.787 34 H 0.061 0.939 35 H 0.246 0.754 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.140 0.860 41 H 0.160 0.840 42 H 0.168 0.832 43 H 0.176 0.824 44 H 0.157 0.843 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.130 0.870 48 H 0.122 0.878 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.275 -18.346 2.620 20.724 hybrid contribution -0.137 1.348 -0.497 1.443 sum 9.139 -16.998 2.123 19.415 Atomic orbital electron populations 1.22070 0.91837 1.03221 1.03268 1.19813 0.94496 0.89374 0.83892 1.21022 0.96020 0.91517 0.89314 1.42306 1.61137 1.09724 1.24083 1.19480 1.24880 0.89205 1.04348 0.92007 1.25390 1.01076 1.01977 0.97416 1.69757 1.40534 1.37442 1.13389 0.85330 0.77439 0.80766 0.76935 1.21216 1.21601 1.20482 1.45873 1.06928 1.58621 1.23901 1.20418 0.82661 0.77592 0.88173 1.90644 1.56583 1.52680 1.45212 1.21414 0.94376 1.05074 0.96338 1.22264 0.93880 0.97826 0.84928 1.85940 1.20052 1.78190 1.39862 1.19373 0.82209 0.96745 0.95596 1.21499 0.95700 1.07442 0.99832 1.21290 0.93788 0.96780 0.98849 1.21457 1.01401 1.01406 0.93704 1.21360 0.91651 0.97197 0.99729 1.20753 0.96548 1.04486 0.96750 1.22314 0.99300 0.99741 0.97066 1.23256 0.99234 1.02421 0.95776 1.22871 1.03282 0.90337 1.02886 0.90323 0.92866 0.89421 0.96217 0.97367 0.78726 0.93923 0.75410 0.85049 0.87862 0.93215 0.91062 0.85970 0.84032 0.83161 0.82402 0.84320 0.89534 0.88199 0.87045 0.87792 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 7.04 71.98 0.51 -3.49 16 2 C 0.21 6.67 0.54 3.61 0.00 6.67 16 3 C 0.15 6.42 5.02 86.38 0.43 6.86 16 4 N -0.73 -36.99 5.17 -343.46 -1.78 -38.77 16 5 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 6 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 7 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 8 N -0.96 -57.52 13.06 21.65 0.28 -57.24 16 9 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.70 -20.70 4.71 -422.93 -1.99 -22.69 16 14 C 0.52 16.83 7.24 87.66 0.63 17.47 16 15 O -0.57 -22.13 12.80 -3.06 -0.04 -22.17 16 16 C -0.13 -3.44 6.07 29.85 0.18 -3.26 16 17 C 0.09 2.44 4.03 71.98 0.29 2.73 16 18 O -0.33 -9.24 10.14 -92.42 -0.94 -10.17 16 19 C 0.11 2.81 6.69 22.51 0.15 2.96 16 20 C -0.23 -5.71 9.04 22.37 0.20 -5.51 16 21 C -0.09 -1.81 10.04 22.25 0.22 -1.58 16 22 C -0.16 -2.74 10.04 22.28 0.22 -2.51 16 23 C -0.08 -1.40 10.04 22.25 0.22 -1.18 16 24 C -0.17 -3.67 9.99 22.36 0.22 -3.45 16 25 C -0.16 -4.69 4.05 -10.79 -0.04 -4.73 16 26 C -0.17 -3.68 9.61 30.60 0.29 -3.39 16 27 C -0.16 -3.38 9.81 30.60 0.30 -3.08 16 28 H 0.08 2.08 6.84 -2.39 -0.02 2.07 16 29 H 0.05 1.71 6.86 -2.39 -0.02 1.70 16 30 H 0.09 1.79 7.01 -2.39 -0.02 1.77 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.01 0.41 6.65 -2.39 -0.02 0.39 16 33 H 0.38 19.47 6.35 -92.71 -0.59 18.89 16 34 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 35 H 0.41 10.01 8.48 -92.71 -0.79 9.22 16 36 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.05 1.61 7.61 -2.39 -0.02 1.59 16 39 H 0.07 1.94 7.63 -2.38 -0.02 1.92 16 40 H 0.12 3.18 6.30 -2.91 -0.02 3.16 16 41 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 44 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.09 2.99 7.18 -2.39 -0.02 2.97 16 46 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.11 2.19 5.87 -2.39 -0.01 2.18 16 48 H 0.10 1.96 7.42 -2.39 -0.02 1.95 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -71.85 394.77 2.31 -69.54 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: -0.41 Total: 44.69 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 5.15 Total: -12.17 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -3.49 Total: -118.70 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.98 Total: -32.35 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -71.85 2.31 -69.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753528398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.461 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds