Wall clock time and date at job start Tue Mar 31 2020 16:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47236 * 102.31127 * 3 2 1 5 5 C 1.34779 * 120.00043 * 89.99825 * 4 3 2 6 6 O 1.21280 * 120.00050 * 179.97438 * 5 4 3 7 7 C 1.50699 * 119.99881 * 0.02562 * 5 4 3 8 8 H 1.08999 * 110.66858 * 61.75679 * 7 5 4 9 9 C 1.55001 * 110.74854 * 298.54144 * 7 5 4 10 10 C 1.55816 * 102.79214 * 241.67705 * 9 7 5 11 11 H 1.08996 * 115.39115 * 158.11111 * 10 9 7 12 12 C 1.55815 * 105.32827 * 286.58647 * 10 9 7 13 13 C 1.58550 * 102.12189 * 72.92210 * 12 10 9 14 14 C 1.55815 * 102.11919 * 0.02562 * 13 12 10 15 15 H 1.09005 * 115.39447 * 158.59704 * 14 13 12 16 16 O 1.46536 * 101.24442 * 32.41713 * 10 9 7 17 17 C 1.46500 * 120.00198 * 270.00256 * 4 3 2 18 18 C 1.53036 * 109.46326 * 60.06664 * 17 4 3 19 19 C 1.53185 * 109.31520 * 178.61648 * 18 17 4 20 20 N 1.46931 * 108.77603 * 54.63181 * 19 18 17 21 21 C 1.36944 * 120.62911 * 126.36888 * 20 19 18 22 22 H 1.07995 * 119.99984 * 208.02665 * 21 20 19 23 23 C 1.38812 * 119.99971 * 28.02210 * 21 20 19 24 24 N 1.31622 * 120.00095 * 17.52691 * 23 21 20 25 25 Si 1.86797 * 120.00177 * 197.52307 * 23 21 20 26 26 H 1.48503 * 109.47192 * 94.06839 * 25 23 21 27 27 H 1.48493 * 109.47475 * 214.06847 * 25 23 21 28 28 H 1.48499 * 109.46955 * 334.07148 * 25 23 21 29 29 C 1.46923 * 118.74030 * 306.39700 * 20 19 18 30 30 C 1.53042 * 109.45532 * 299.99615 * 17 4 3 31 31 H 4.40635 * 5.51438 * 180.02562 * 4 1 2 32 32 H 1.09001 * 109.47118 * 342.31445 * 3 2 1 33 33 H 1.09002 * 109.47062 * 222.31263 * 3 2 1 34 34 H 1.08997 * 110.74777 * 123.35126 * 9 7 5 35 35 H 1.09003 * 110.90441 * 0.07762 * 9 7 5 36 36 H 1.08995 * 110.75528 * 191.74277 * 12 10 9 37 37 H 1.09007 * 110.74630 * 315.08726 * 12 10 9 38 38 H 1.08999 * 111.27440 * 241.80886 * 13 12 10 39 39 H 1.09007 * 110.86021 * 118.00618 * 13 12 10 40 40 H 1.09000 * 109.45868 * 180.02562 * 17 4 3 41 41 H 1.09000 * 109.49391 * 298.56800 * 18 17 4 42 42 H 1.09000 * 109.49828 * 58.66228 * 18 17 4 43 43 H 1.08999 * 109.58679 * 294.84689 * 19 18 17 44 44 H 1.09003 * 109.70480 * 174.49126 * 19 18 17 45 45 H 0.96995 * 120.00144 * 179.97438 * 24 23 21 46 46 H 1.09006 * 109.58324 * 293.81765 * 29 20 19 47 47 H 1.08997 * 109.70533 * 173.46563 * 29 20 19 48 48 H 1.08994 * 109.50284 * 301.33418 * 30 17 4 49 49 H 1.09000 * 109.49770 * 61.40415 * 30 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2954 -1.3494 5 6 3.3582 1.5713 -1.7213 6 8 3.7628 1.8153 -2.8383 7 6 3.1070 2.6948 -0.7488 8 1 3.7510 2.5981 0.1253 9 6 1.6152 2.7352 -0.3299 10 6 1.1535 4.1358 -0.8330 11 1 0.0801 4.2468 -0.9865 12 6 1.7971 5.1593 0.1498 13 6 3.3231 5.1179 -0.2785 14 6 3.3091 4.0779 -1.4387 15 1 4.1501 4.1371 -2.1297 16 8 1.9861 4.2990 -2.0278 17 6 3.3788 -0.7968 -2.2947 18 6 2.0773 -1.5657 -2.5334 19 6 2.3290 -2.6851 -3.5484 20 7 3.4419 -3.5163 -3.0694 21 6 3.2973 -4.8726 -2.9469 22 1 3.8796 -5.4139 -2.2160 23 6 2.4022 -5.5516 -3.7622 24 7 1.9537 -4.9849 -4.8622 25 14 1.8344 -7.2696 -3.2982 26 1 0.5603 -7.1821 -2.5403 27 1 1.6232 -8.0709 -4.5305 28 1 2.8682 -7.9217 -2.4549 29 6 4.7126 -2.8647 -2.7238 30 6 4.4341 -1.7433 -1.7180 31 1 -1.0501 0.0002 0.0001 32 1 3.0097 -0.9783 0.3122 33 1 3.0089 0.7608 0.6918 34 1 1.5161 2.6620 0.7531 35 1 1.0514 1.9429 -0.8222 36 1 1.3695 6.1519 0.0086 37 1 1.6788 4.8301 1.1823 38 1 3.9547 4.7746 0.5408 39 1 3.6518 6.0930 -0.6385 40 1 3.7363 -0.3864 -3.2391 41 1 1.7323 -1.9973 -1.5938 42 1 1.3191 -0.8859 -2.9221 43 1 2.5866 -2.2512 -4.5145 44 1 1.4330 -3.2974 -3.6500 45 1 1.3285 -5.4595 -5.4321 46 1 5.1645 -2.4454 -3.6228 47 1 5.3906 -3.5937 -2.2800 48 1 5.3534 -1.1899 -1.5265 49 1 4.0671 -2.1728 -0.7859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754640708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:00 Heat of formation + Delta-G solvation = 22.084500 kcal Electronic energy + Delta-G solvation = -30215.160446 eV Core-core repulsion = 26338.234852 eV Total energy + Delta-G solvation = -3876.925594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.33896 -39.46448 -37.33437 -35.77113 -33.38002 -32.42653 -32.08471 -30.99313 -30.07564 -29.88308 -29.39927 -27.15562 -25.22157 -23.51565 -22.19095 -22.15290 -21.44401 -20.59187 -19.58467 -19.13861 -17.91090 -17.31265 -16.92573 -16.75393 -16.20006 -15.43668 -15.20590 -14.74792 -14.68074 -14.33609 -13.87514 -13.70219 -13.48345 -13.36317 -13.23456 -12.95351 -12.80694 -12.65563 -12.36163 -11.99704 -11.88832 -11.71634 -11.47873 -11.44168 -11.19837 -11.16419 -11.00263 -10.82549 -10.74397 -10.52232 -10.27906 -10.16989 -10.14607 -10.06362 -9.87243 -9.75920 -9.64691 -9.39281 -8.60310 -8.38872 -6.68558 -5.78602 -3.21252 2.45885 2.74655 2.81277 3.33478 3.37812 3.44416 3.45969 3.66271 4.20351 4.24498 4.35357 4.47160 4.49409 4.58293 4.65684 4.84821 4.87357 4.99350 5.03385 5.20408 5.24595 5.30244 5.36819 5.45154 5.50804 5.52226 5.55303 5.62302 5.70660 5.76200 5.83603 5.86732 5.87528 5.95092 6.08877 6.22990 6.32763 6.38250 6.48267 6.59653 6.64214 6.78150 6.88985 6.95512 7.35836 7.49596 7.58739 7.67247 7.79782 8.28997 8.44927 9.20873 9.84350 10.41338 11.30029 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023410 B = 0.003062 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.772601 B = 9143.192770 C = 9524.110191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.195 4.195 3 C 0.215 3.785 4 N -0.602 5.602 5 C 0.525 3.475 6 O -0.530 6.530 7 C -0.141 4.141 8 H 0.106 0.894 9 C -0.147 4.147 10 C 0.058 3.942 11 H 0.128 0.872 12 C -0.147 4.147 13 C -0.149 4.149 14 C 0.088 3.912 15 H 0.137 0.863 16 O -0.363 6.363 17 C 0.145 3.855 18 C -0.141 4.141 19 C 0.174 3.826 20 N -0.592 5.592 21 C -0.253 4.253 22 H 0.066 0.934 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.902 3.098 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.148 3.852 30 C -0.138 4.138 31 H 0.215 0.785 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.019 0.981 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.020 0.980 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 18.769 14.918 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C 0.093 3.907 4 N -0.333 5.333 5 C 0.313 3.687 6 O -0.406 6.406 7 C -0.162 4.162 8 H 0.124 0.876 9 C -0.184 4.184 10 C 0.000 4.000 11 H 0.145 0.855 12 C -0.185 4.185 13 C -0.186 4.186 14 C 0.030 3.970 15 H 0.154 0.846 16 O -0.281 6.281 17 C 0.043 3.957 18 C -0.181 4.181 19 C 0.048 3.952 20 N -0.314 5.314 21 C -0.383 4.383 22 H 0.084 0.916 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.204 1.204 29 C 0.021 3.979 30 C -0.179 4.179 31 H 0.232 0.768 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.252 18.853 13.923 23.438 hybrid contribution -0.636 -1.036 0.526 1.325 sum -0.889 17.817 14.449 22.957 Atomic orbital electron populations 1.24889 0.95883 1.01295 0.98693 1.23384 0.94836 0.99909 1.01493 1.18411 0.83956 1.03582 0.84794 1.48255 1.64884 1.06543 1.13630 1.20357 0.76948 0.83248 0.88175 1.90697 1.45430 1.83253 1.21245 1.23094 0.99019 0.95213 0.98884 0.87575 1.23625 0.93971 0.99066 1.01751 1.24672 0.96711 0.93787 0.84821 0.85452 1.23846 0.95266 1.00067 0.99339 1.23859 0.96513 1.00026 0.98230 1.24480 0.88278 0.90858 0.93428 0.84594 1.90160 1.16684 1.91863 1.29407 1.21242 0.96661 0.85373 0.92413 1.22523 0.95172 0.98564 1.01837 1.20754 0.93282 0.89554 0.91640 1.44090 1.06888 1.03369 1.77102 1.19187 1.22616 0.82853 1.13647 0.91628 1.25054 1.01838 0.97777 0.94939 1.70042 1.34588 1.38124 1.11744 0.86283 0.78855 0.84253 0.77425 1.21520 1.21783 1.20392 1.20849 0.89559 0.92814 0.94671 1.22392 0.97280 0.97643 1.00545 0.76778 0.87575 0.88696 0.89962 0.88825 0.90762 0.90550 0.90381 0.90481 0.88539 0.92369 0.93325 0.96243 0.89264 0.93606 0.96200 0.92428 0.92793 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 18.36 29.55 0.54 -1.58 16 2 C -0.19 -2.35 8.96 -37.13 -0.33 -2.69 16 3 C 0.22 2.46 4.94 -6.83 -0.03 2.43 16 4 N -0.60 -8.80 2.37 -169.38 -0.40 -9.20 16 5 C 0.53 7.98 6.94 -10.99 -0.08 7.90 16 6 O -0.53 -10.25 15.21 5.56 0.08 -10.16 16 7 C -0.14 -1.53 1.93 -89.18 -0.17 -1.70 16 8 H 0.11 0.86 7.18 -51.93 -0.37 0.49 16 9 C -0.15 -1.43 3.96 -24.17 -0.10 -1.53 16 10 C 0.06 0.56 5.66 -23.73 -0.13 0.43 16 11 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 12 C -0.15 -1.08 6.71 -22.16 -0.15 -1.23 16 13 C -0.15 -1.16 6.70 -22.16 -0.15 -1.31 16 14 C 0.09 0.99 4.60 -23.69 -0.11 0.88 16 15 H 0.14 1.64 7.71 -51.93 -0.40 1.24 16 16 O -0.36 -4.99 11.66 -35.23 -0.41 -5.40 16 17 C 0.14 2.59 2.48 -67.89 -0.17 2.42 16 18 C -0.14 -2.79 4.73 -26.62 -0.13 -2.92 16 19 C 0.17 4.24 5.31 -3.71 -0.02 4.22 16 20 N -0.59 -14.80 2.99 -172.32 -0.52 -15.32 16 21 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 22 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 23 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 24 N -0.90 -26.34 11.22 55.49 0.62 -25.72 16 25 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.15 3.10 6.51 -3.71 -0.02 3.08 16 30 C -0.14 -2.38 5.31 -26.61 -0.14 -2.52 16 31 H 0.22 1.77 7.80 -54.09 -0.42 1.35 16 32 H 0.11 1.21 6.45 -51.93 -0.34 0.88 16 33 H 0.10 0.79 6.27 -51.93 -0.33 0.46 16 34 H 0.08 0.62 7.76 -51.93 -0.40 0.21 16 35 H 0.09 1.12 4.53 -51.93 -0.24 0.89 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.44 7.78 -51.92 -0.40 0.04 16 38 H 0.08 0.48 7.80 -51.93 -0.41 0.07 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 41 H 0.06 1.15 7.02 -51.93 -0.36 0.79 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -33.33 373.08 -9.06 -42.39 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.61 Total: 2.34 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.42 Total: -1.18 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.29 Total: -50.24 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.33 Total: -15.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.33 -9.06 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754640708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.471 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds