Wall clock time and date at job start Tue Mar 31 2020 16:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47236 * 102.31127 * 3 2 1 5 5 C 1.34779 * 120.00043 * 89.99825 * 4 3 2 6 6 O 1.21280 * 120.00050 * 179.97438 * 5 4 3 7 7 C 1.50699 * 119.99881 * 0.02562 * 5 4 3 8 8 H 1.08999 * 110.66858 * 61.75679 * 7 5 4 9 9 C 1.55001 * 110.74854 * 298.54144 * 7 5 4 10 10 C 1.55816 * 102.79214 * 241.67705 * 9 7 5 11 11 H 1.08996 * 115.39115 * 158.11111 * 10 9 7 12 12 C 1.55815 * 105.32827 * 286.58647 * 10 9 7 13 13 C 1.58550 * 102.12189 * 72.92210 * 12 10 9 14 14 C 1.55815 * 102.11919 * 0.02562 * 13 12 10 15 15 H 1.09005 * 115.39447 * 158.59704 * 14 13 12 16 16 O 1.46536 * 101.24442 * 32.41713 * 10 9 7 17 17 C 1.46500 * 120.00198 * 270.00256 * 4 3 2 18 18 C 1.53036 * 109.46326 * 60.06664 * 17 4 3 19 19 C 1.53185 * 109.31520 * 178.61648 * 18 17 4 20 20 N 1.46931 * 108.77603 * 54.63181 * 19 18 17 21 21 C 1.36944 * 120.62911 * 126.36888 * 20 19 18 22 22 H 1.07995 * 119.99984 * 208.02665 * 21 20 19 23 23 C 1.38812 * 119.99971 * 28.02210 * 21 20 19 24 24 N 1.31622 * 120.00095 * 17.52691 * 23 21 20 25 25 Si 1.86797 * 120.00177 * 197.52307 * 23 21 20 26 26 H 1.48503 * 109.47192 * 94.06839 * 25 23 21 27 27 H 1.48493 * 109.47475 * 214.06847 * 25 23 21 28 28 H 1.48499 * 109.46955 * 334.07148 * 25 23 21 29 29 C 1.46923 * 118.74030 * 306.39700 * 20 19 18 30 30 C 1.53042 * 109.45532 * 299.99615 * 17 4 3 31 31 H 4.40635 * 5.51438 * 180.02562 * 4 1 2 32 32 H 1.09001 * 109.47118 * 342.31445 * 3 2 1 33 33 H 1.09002 * 109.47062 * 222.31263 * 3 2 1 34 34 H 1.08997 * 110.74777 * 123.35126 * 9 7 5 35 35 H 1.09003 * 110.90441 * 0.07762 * 9 7 5 36 36 H 1.08995 * 110.75528 * 191.74277 * 12 10 9 37 37 H 1.09007 * 110.74630 * 315.08726 * 12 10 9 38 38 H 1.08999 * 111.27440 * 241.80886 * 13 12 10 39 39 H 1.09007 * 110.86021 * 118.00618 * 13 12 10 40 40 H 1.09000 * 109.45868 * 180.02562 * 17 4 3 41 41 H 1.09000 * 109.49391 * 298.56800 * 18 17 4 42 42 H 1.09000 * 109.49828 * 58.66228 * 18 17 4 43 43 H 1.08999 * 109.58679 * 294.84689 * 19 18 17 44 44 H 1.09003 * 109.70480 * 174.49126 * 19 18 17 45 45 H 0.96995 * 120.00144 * 179.97438 * 24 23 21 46 46 H 1.09006 * 109.58324 * 293.81765 * 29 20 19 47 47 H 1.08997 * 109.70533 * 173.46563 * 29 20 19 48 48 H 1.08994 * 109.50284 * 301.33418 * 30 17 4 49 49 H 1.09000 * 109.49770 * 61.40415 * 30 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2954 -1.3494 5 6 3.3582 1.5713 -1.7213 6 8 3.7628 1.8153 -2.8383 7 6 3.1070 2.6948 -0.7488 8 1 3.7510 2.5981 0.1253 9 6 1.6152 2.7352 -0.3299 10 6 1.1535 4.1358 -0.8330 11 1 0.0801 4.2468 -0.9865 12 6 1.7971 5.1593 0.1498 13 6 3.3231 5.1179 -0.2785 14 6 3.3091 4.0779 -1.4387 15 1 4.1501 4.1371 -2.1297 16 8 1.9861 4.2990 -2.0278 17 6 3.3788 -0.7968 -2.2947 18 6 2.0773 -1.5657 -2.5334 19 6 2.3290 -2.6851 -3.5484 20 7 3.4419 -3.5163 -3.0694 21 6 3.2973 -4.8726 -2.9469 22 1 3.8796 -5.4139 -2.2160 23 6 2.4022 -5.5516 -3.7622 24 7 1.9537 -4.9849 -4.8622 25 14 1.8344 -7.2696 -3.2982 26 1 0.5603 -7.1821 -2.5403 27 1 1.6232 -8.0709 -4.5305 28 1 2.8682 -7.9217 -2.4549 29 6 4.7126 -2.8647 -2.7238 30 6 4.4341 -1.7433 -1.7180 31 1 -1.0501 0.0002 0.0001 32 1 3.0097 -0.9783 0.3122 33 1 3.0089 0.7608 0.6918 34 1 1.5161 2.6620 0.7531 35 1 1.0514 1.9429 -0.8222 36 1 1.3695 6.1519 0.0086 37 1 1.6788 4.8301 1.1823 38 1 3.9547 4.7746 0.5408 39 1 3.6518 6.0930 -0.6385 40 1 3.7363 -0.3864 -3.2391 41 1 1.7323 -1.9973 -1.5938 42 1 1.3191 -0.8859 -2.9221 43 1 2.5866 -2.2512 -4.5145 44 1 1.4330 -3.2974 -3.6500 45 1 1.3285 -5.4595 -5.4321 46 1 5.1645 -2.4454 -3.6228 47 1 5.3906 -3.5937 -2.2800 48 1 5.3534 -1.1899 -1.5265 49 1 4.0671 -2.1728 -0.7859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754640708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:59 Heat of formation + Delta-G solvation = 1.288146 kcal Electronic energy + Delta-G solvation = -30216.062244 eV Core-core repulsion = 26338.234852 eV Total energy + Delta-G solvation = -3877.827392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.25599 -40.61582 -38.89125 -37.11958 -34.88417 -33.49982 -33.28203 -32.17671 -31.61845 -30.93405 -30.58989 -28.19637 -27.00748 -24.72808 -23.91599 -23.31004 -22.46450 -21.39651 -20.81932 -20.54576 -18.98450 -18.64916 -18.20701 -17.85122 -17.36086 -16.84061 -16.27966 -16.10670 -15.74825 -15.46588 -15.36244 -15.22605 -14.87021 -14.66561 -14.32254 -14.30331 -14.17890 -14.00452 -13.56587 -13.22146 -13.07259 -12.73881 -12.67079 -12.60732 -12.50402 -12.46641 -12.22335 -12.10998 -11.98411 -11.94731 -11.87358 -11.62085 -11.54612 -11.36503 -11.25040 -10.94002 -10.72425 -10.62616 -10.59089 -9.82466 -8.74446 -7.89206 -5.35685 1.41205 1.47164 1.47905 1.57726 1.64237 1.95615 2.34022 2.50341 2.90538 3.26473 3.36195 3.49790 3.54386 3.61951 3.72683 3.77678 3.90864 3.97205 4.04885 4.11433 4.21596 4.23959 4.29265 4.36190 4.43127 4.50706 4.57645 4.61303 4.62927 4.75700 4.82639 4.88905 4.99201 5.00455 5.01214 5.04507 5.07486 5.11424 5.14653 5.18404 5.25976 5.26785 5.41589 5.53643 5.60960 5.65443 5.67505 6.35711 6.36635 6.73547 7.10955 7.12468 7.81333 8.34996 9.18120 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023410 B = 0.003062 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.772601 B = 9143.192770 C = 9524.110191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.220 4.220 3 C 0.211 3.789 4 N -0.598 5.598 5 C 0.518 3.482 6 O -0.584 6.584 7 C -0.131 4.131 8 H 0.147 0.853 9 C -0.139 4.139 10 C 0.047 3.953 11 H 0.134 0.866 12 C -0.138 4.138 13 C -0.139 4.139 14 C 0.074 3.926 15 H 0.114 0.886 16 O -0.409 6.409 17 C 0.154 3.846 18 C -0.117 4.117 19 C 0.183 3.817 20 N -0.607 5.607 21 C -0.261 4.261 22 H 0.074 0.926 23 C -0.053 4.053 24 N -0.939 5.939 25 Si 0.970 3.030 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.264 1.264 29 C 0.142 3.858 30 C -0.120 4.120 31 H 0.236 0.764 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.041 0.959 43 H -0.015 1.015 44 H 0.057 0.943 45 H 0.249 0.751 46 H 0.005 0.995 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 19.610 19.334 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.221 4.221 3 C 0.089 3.911 4 N -0.328 5.328 5 C 0.308 3.692 6 O -0.463 6.463 7 C -0.152 4.152 8 H 0.164 0.836 9 C -0.177 4.177 10 C -0.009 4.009 11 H 0.151 0.849 12 C -0.175 4.175 13 C -0.176 4.176 14 C 0.016 3.984 15 H 0.132 0.868 16 O -0.329 6.329 17 C 0.050 3.950 18 C -0.157 4.157 19 C 0.057 3.943 20 N -0.331 5.331 21 C -0.391 4.391 22 H 0.092 0.908 23 C -0.249 4.249 24 N -0.585 5.585 25 Si 0.798 3.202 26 H -0.212 1.212 27 H -0.225 1.225 28 H -0.188 1.188 29 C 0.016 3.984 30 C -0.160 4.160 31 H 0.252 0.748 32 H 0.128 0.872 33 H 0.154 0.846 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.003 0.997 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.023 0.977 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.104 19.709 18.403 26.966 hybrid contribution -0.685 -1.266 -0.937 1.717 sum -0.789 18.444 17.466 25.414 Atomic orbital electron populations 1.25562 0.96751 1.00603 0.97563 1.23625 0.95378 1.00668 1.02446 1.18770 0.83816 1.05286 0.83185 1.48168 1.64708 1.05529 1.14377 1.21263 0.75573 0.84089 0.88287 1.90679 1.47798 1.84010 1.23833 1.23172 1.00691 0.92657 0.98674 0.83571 1.23616 0.92401 0.98175 1.03465 1.24952 0.96947 0.94780 0.84269 0.84867 1.23838 0.94233 0.99538 0.99888 1.23847 0.97523 0.98887 0.97352 1.24577 0.86982 0.92506 0.94318 0.86834 1.90125 1.18357 1.92239 1.32150 1.20803 0.95477 0.86290 0.92393 1.22184 0.96268 0.96925 1.00362 1.20470 0.92007 0.90196 0.91649 1.44330 1.08398 1.03172 1.77171 1.19577 1.22279 0.83949 1.13278 0.90820 1.25879 1.02357 1.01727 0.94897 1.70219 1.35459 1.39772 1.13028 0.85210 0.78537 0.79646 0.76808 1.21208 1.22511 1.18792 1.21022 0.88046 0.94097 0.95193 1.22178 0.98154 0.96114 0.99565 0.74753 0.87156 0.84592 0.86490 0.91206 0.90397 0.87801 0.87681 0.90392 0.92025 0.91599 0.94027 0.99729 0.92446 0.94176 0.97689 0.91393 0.90194 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.73 18.36 74.32 1.36 -2.36 16 2 C -0.22 -4.71 8.96 31.12 0.28 -4.43 16 3 C 0.21 4.09 4.94 84.57 0.42 4.51 16 4 N -0.60 -16.64 2.37 -808.18 -1.91 -18.56 16 5 C 0.52 15.38 6.94 87.66 0.61 15.99 16 6 O -0.58 -23.47 15.21 -3.03 -0.05 -23.52 16 7 C -0.13 -2.50 1.93 -9.86 -0.02 -2.51 16 8 H 0.15 1.59 7.18 -2.39 -0.02 1.58 16 9 C -0.14 -2.27 3.96 32.25 0.13 -2.14 16 10 C 0.05 0.82 5.66 32.54 0.18 1.01 16 11 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 12 C -0.14 -1.49 6.71 33.56 0.23 -1.26 16 13 C -0.14 -1.71 6.70 33.56 0.22 -1.48 16 14 C 0.07 1.59 4.60 32.56 0.15 1.74 16 15 H 0.11 2.85 7.71 -2.38 -0.02 2.84 16 16 O -0.41 -11.23 11.66 -148.98 -1.74 -12.97 16 17 C 0.15 5.53 2.48 45.02 0.11 5.64 16 18 C -0.12 -4.76 4.73 30.67 0.15 -4.61 16 19 C 0.18 9.39 5.31 86.36 0.46 9.85 16 20 N -0.61 -31.04 2.99 -699.09 -2.09 -33.13 16 21 C -0.26 -14.33 9.58 84.03 0.81 -13.52 16 22 H 0.07 3.87 7.89 -2.91 -0.02 3.84 16 23 C -0.05 -3.02 4.90 84.86 0.42 -2.60 16 24 N -0.94 -57.07 11.22 21.65 0.24 -56.82 16 25 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 29 C 0.14 5.97 6.51 86.36 0.56 6.53 16 30 C -0.12 -3.96 5.31 30.67 0.16 -3.79 16 31 H 0.24 3.29 7.80 -4.41 -0.03 3.26 16 32 H 0.11 2.09 6.45 -2.39 -0.02 2.08 16 33 H 0.14 1.51 6.27 -2.39 -0.01 1.50 16 34 H 0.12 1.10 7.76 -2.39 -0.02 1.08 16 35 H 0.07 1.53 4.53 -2.39 -0.01 1.52 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.59 7.78 -2.38 -0.02 0.57 16 38 H 0.10 0.74 7.80 -2.39 -0.02 0.72 16 39 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.06 2.68 6.90 -2.39 -0.02 2.66 16 41 H 0.07 2.57 7.02 -2.39 -0.02 2.56 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H 0.06 3.29 6.06 -2.39 -0.01 3.27 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 47 H 0.07 2.68 7.94 -2.39 -0.02 2.66 16 48 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.08 2.33 6.72 -2.39 -0.02 2.32 16 Total: -1.00 -78.16 373.08 3.65 -74.51 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.94 Total: 16.95 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.22 Total: 6.54 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.76 Total: -108.51 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.78 Total: -36.49 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -78.16 3.65 -74.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754640708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.798 kcal (2) G-P(sol) polarization free energy of solvation -78.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds