Wall clock time and date at job start Tue Mar 31 2020 17:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47440 * 2 1 4 4 O 1.21283 * 120.00038 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00626 * 180.02562 * 3 2 1 6 6 C 1.48149 * 127.83330 * 359.97438 * 5 3 2 7 7 C 1.54383 * 104.61830 * 140.39336 * 6 5 3 8 8 H 1.09004 * 110.34727 * 264.99555 * 7 6 5 9 9 C 1.53006 * 110.34487 * 142.73480 * 7 6 5 10 10 C 1.54292 * 104.95937 * 23.86607 * 7 6 5 11 11 H 1.09004 * 110.34021 * 241.02114 * 10 7 6 12 12 N 1.46898 * 110.34246 * 118.87369 * 10 7 6 13 13 C 1.46905 * 111.00087 * 155.00166 * 12 10 7 14 14 C 1.50701 * 109.47315 * 179.97438 * 13 12 10 15 15 C 1.38297 * 119.93529 * 89.99251 * 14 13 12 16 16 C 1.38096 * 120.07251 * 180.02562 * 15 14 13 17 17 C 1.38884 * 119.92867 * 0.02562 * 16 15 14 18 18 O 1.35748 * 120.06489 * 179.97438 * 17 16 15 19 19 C 1.34828 * 117.00512 * 5.54431 * 18 17 16 20 20 H 1.07996 * 119.99771 * 354.93463 * 19 18 17 21 21 C 1.38650 * 120.00069 * 174.94492 * 19 18 17 22 22 N 1.31553 * 120.00142 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99985 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46943 * 269.99795 * 23 21 19 25 25 H 1.48499 * 109.47498 * 149.99289 * 23 21 19 26 26 H 1.48507 * 109.46967 * 29.99312 * 23 21 19 27 27 C 1.38874 * 119.85951 * 0.25970 * 17 16 15 28 28 C 1.38103 * 119.93228 * 359.48329 * 27 17 16 29 29 C 1.48141 * 127.84421 * 179.97438 * 5 3 2 30 30 H 1.09004 * 109.47002 * 300.00092 * 1 2 3 31 31 H 1.08999 * 109.47101 * 59.99757 * 1 2 3 32 32 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47002 * 239.99908 * 2 1 3 34 34 H 1.09003 * 109.47477 * 119.99925 * 2 1 3 35 35 H 1.08997 * 110.40658 * 21.60756 * 6 5 3 36 36 H 1.08999 * 110.50481 * 259.22707 * 6 5 3 37 37 H 1.08999 * 109.46824 * 304.46611 * 9 7 6 38 38 H 1.08995 * 109.46758 * 64.46381 * 9 7 6 39 39 H 1.09001 * 109.46987 * 184.46269 * 9 7 6 40 40 H 1.00898 * 110.99735 * 278.94980 * 12 10 7 41 41 H 1.09001 * 109.47082 * 59.99616 * 13 12 10 42 42 H 1.09004 * 109.46618 * 299.99731 * 13 12 10 43 43 H 1.08006 * 119.96516 * 0.02562 * 15 14 13 44 44 H 1.08000 * 120.03672 * 179.97438 * 16 15 14 45 45 H 0.97000 * 120.00033 * 0.02562 * 22 21 19 46 46 H 1.08005 * 120.03513 * 179.72217 * 27 17 16 47 47 H 1.08003 * 119.96143 * 180.23214 * 28 27 17 48 48 H 1.09005 * 110.40910 * 100.81815 * 29 5 3 49 49 H 1.09009 * 110.40486 * 338.39346 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4646 0.6828 -0.0006 7 6 5.5202 1.2839 -0.9535 8 1 5.4008 0.8758 -1.9572 9 6 6.9303 1.0052 -0.4291 10 6 5.2383 2.8008 -0.9542 11 1 4.9822 3.1382 -1.9586 12 7 6.4055 3.5374 -0.4513 13 6 6.4236 4.9121 -0.9689 14 6 7.6321 5.6351 -0.4322 15 6 8.8240 5.6013 -1.1326 16 6 9.9333 6.2624 -0.6431 17 6 9.8510 6.9613 0.5543 18 8 10.9398 7.6117 1.0382 19 6 12.0365 7.6370 0.2543 20 1 12.0496 7.0849 -0.6738 21 6 13.1474 8.3715 0.6398 22 7 13.1314 9.0443 1.7701 23 14 14.6671 8.4060 -0.4461 24 1 15.5759 7.2965 -0.0608 25 1 15.3690 9.7033 -0.2743 26 1 14.2643 8.2453 -1.8664 27 6 8.6543 6.9884 1.2582 28 6 7.5471 6.3297 0.7607 29 6 4.0371 2.9834 -0.0011 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.1175 -0.2796 -0.3764 36 1 4.8771 0.5721 1.0022 37 1 7.0207 1.3841 0.5889 38 1 7.1142 -0.0691 -0.4347 39 1 7.6603 1.5022 -1.0680 40 1 6.4302 3.5305 0.5574 41 1 5.5193 5.4316 -0.6520 42 1 6.4671 4.8897 -2.0578 43 1 8.8875 5.0573 -2.0635 44 1 10.8640 6.2353 -1.1904 45 1 12.3424 9.0261 2.3342 46 1 8.5884 7.5273 2.1919 47 1 6.6151 6.3535 1.3060 48 1 4.3822 3.2334 1.0021 49 1 3.3674 3.7568 -0.3774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054306607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:50 Heat of formation + Delta-G solvation = -42.445552 kcal Electronic energy + Delta-G solvation = -27713.856840 eV Core-core repulsion = 23834.133012 eV Total energy + Delta-G solvation = -3879.723827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.54268 -39.21742 -38.53785 -36.95228 -34.87714 -33.18028 -32.68075 -32.21073 -30.28839 -30.08538 -28.08168 -26.60132 -25.33846 -24.81035 -23.81740 -23.00028 -21.96586 -20.61879 -19.82220 -19.47030 -18.39263 -17.66157 -16.89114 -16.51254 -16.09324 -15.89510 -15.36421 -15.08665 -14.52361 -14.33330 -14.06040 -13.90090 -13.76316 -13.74842 -13.55214 -13.29695 -13.17990 -12.96036 -12.72076 -12.67376 -12.52225 -12.30018 -11.99658 -11.91734 -11.58779 -11.53259 -11.23513 -11.14844 -11.04702 -10.85980 -10.77464 -10.62714 -10.32933 -10.28031 -10.15061 -9.42612 -9.14653 -8.79299 -8.46897 -8.25748 -7.28653 -6.79198 -4.08444 2.13129 2.18770 2.30105 2.56715 3.22456 3.28410 3.42065 3.95275 4.09688 4.15364 4.25104 4.45509 4.55366 4.62787 4.68045 4.69933 4.84359 4.97589 5.01511 5.04861 5.16155 5.16437 5.26930 5.31359 5.33719 5.37259 5.43671 5.50952 5.52858 5.55574 5.65713 5.68412 5.78738 5.81093 5.83831 5.90957 6.02674 6.12766 6.32714 6.34897 6.59727 6.80280 6.90889 7.05406 7.16182 7.19439 7.30241 7.34457 7.55090 7.70398 7.82424 8.37874 8.89752 9.58565 10.64772 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.030531 B = 0.001879 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.875251 B =14901.446025 C =15351.503623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.530 3.470 4 O -0.543 6.543 5 N -0.624 5.624 6 C 0.101 3.899 7 C -0.097 4.097 8 H 0.080 0.920 9 C -0.123 4.123 10 C 0.076 3.924 11 H 0.088 0.912 12 N -0.666 5.666 13 C 0.115 3.885 14 C -0.183 4.183 15 C -0.048 4.048 16 C -0.231 4.231 17 C 0.159 3.841 18 O -0.203 6.203 19 C -0.472 4.472 20 H 0.085 0.915 21 C 0.010 3.990 22 N -0.881 5.881 23 Si 1.099 2.901 24 H -0.281 1.281 25 H -0.275 1.275 26 H -0.282 1.282 27 C -0.196 4.196 28 C -0.068 4.068 29 C 0.076 3.924 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.344 0.656 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.282 0.718 46 H 0.114 0.886 47 H 0.107 0.893 48 H 0.071 0.929 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.218 -19.600 -5.341 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.320 3.680 4 O -0.420 6.420 5 N -0.359 5.359 6 C -0.022 4.022 7 C -0.117 4.117 8 H 0.098 0.902 9 C -0.181 4.181 10 C -0.035 4.035 11 H 0.106 0.894 12 N -0.297 5.297 13 C -0.013 4.013 14 C -0.185 4.185 15 C -0.067 4.067 16 C -0.251 4.251 17 C 0.105 3.895 18 O -0.107 6.107 19 C -0.548 4.548 20 H 0.102 0.898 21 C -0.196 4.196 22 N -0.513 5.513 23 Si 0.923 3.077 24 H -0.207 1.207 25 H -0.200 1.200 26 H -0.208 1.208 27 C -0.216 4.216 28 C -0.087 4.087 29 C -0.048 4.048 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.164 0.836 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.126 0.874 44 H 0.145 0.855 45 H 0.092 0.908 46 H 0.132 0.868 47 H 0.125 0.875 48 H 0.089 0.911 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.720 -18.574 -5.716 25.637 hybrid contribution -2.197 -0.313 0.610 2.302 sum -18.918 -18.887 -5.106 27.215 Atomic orbital electron populations 1.21543 0.92885 1.01658 1.03427 1.21605 0.98566 0.93445 1.04265 1.20491 0.80028 0.91970 0.75519 1.90718 1.54227 1.46833 1.50181 1.48978 1.04762 1.08732 1.73388 1.22636 0.86689 0.92533 1.00369 1.22142 0.95775 0.94510 0.99252 0.90167 1.21498 0.94855 0.99689 1.02021 1.22550 0.88009 0.94471 0.98505 0.89390 1.60817 1.39108 1.14992 1.14802 1.20698 0.94676 0.86662 0.99228 1.19092 0.95341 1.05795 0.98235 1.20580 0.91793 0.96208 0.98079 1.21184 0.99941 1.04865 0.99088 1.19252 0.87380 0.91092 0.91735 1.83660 1.18822 1.64833 1.43363 1.22244 0.91747 1.35109 1.05658 0.89795 1.26545 1.00721 0.92919 0.99384 1.70543 1.32676 1.37298 1.10792 0.83054 0.73354 0.77460 0.73850 1.20680 1.20049 1.20806 1.20148 0.91498 1.07614 1.02322 1.20474 0.96747 0.96471 0.94988 1.23205 0.95082 0.86463 1.00072 0.91957 0.91956 0.91953 0.88947 0.88974 0.90281 0.90657 0.92486 0.93739 0.90730 0.83633 0.95218 0.90994 0.87380 0.85506 0.90780 0.86823 0.87453 0.91105 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.15 0.34 -0.58 16 2 C -0.14 -0.88 5.40 -27.89 -0.15 -1.03 16 3 C 0.53 5.47 7.91 -10.99 -0.09 5.38 16 4 O -0.54 -7.86 16.25 5.55 0.09 -7.77 16 5 N -0.62 -5.58 3.32 -169.29 -0.56 -6.14 16 6 C 0.10 0.63 6.46 -2.41 -0.02 0.62 16 7 C -0.10 -0.69 3.66 -89.22 -0.33 -1.02 16 8 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 9 C -0.12 -0.95 8.12 37.16 0.30 -0.65 16 10 C 0.08 0.66 3.37 -66.30 -0.22 0.44 16 11 H 0.09 0.81 7.82 -51.93 -0.41 0.40 16 12 N -0.67 -6.86 4.52 -106.49 -0.48 -7.34 16 13 C 0.12 1.39 5.66 -4.97 -0.03 1.36 16 14 C -0.18 -2.91 5.40 -104.58 -0.56 -3.47 16 15 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 16 C -0.23 -4.98 9.17 -39.39 -0.36 -5.34 16 17 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 18 O -0.20 -5.68 9.16 0.06 0.00 -5.68 16 19 C -0.47 -13.20 9.49 30.88 0.29 -12.91 16 20 H 0.08 2.21 5.20 -52.49 -0.27 1.94 16 21 C 0.01 0.27 5.49 -17.52 -0.10 0.17 16 22 N -0.88 -26.22 13.70 55.48 0.76 -25.46 16 23 Si 1.10 23.59 29.92 -169.99 -5.09 18.51 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 C -0.20 -4.03 9.99 -39.40 -0.39 -4.42 16 28 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 29 C 0.08 0.72 6.71 -2.40 -0.02 0.71 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.49 8.10 -51.93 -0.42 0.06 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.42 7.95 -51.93 -0.41 0.01 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.35 7.30 -51.93 -0.38 -0.03 16 36 H 0.08 0.45 7.83 -51.93 -0.41 0.04 16 37 H 0.06 0.47 7.53 -51.93 -0.39 0.08 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 40 H 0.34 3.58 7.70 -39.29 -0.30 3.28 16 41 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 42 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 43 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 45 H 0.28 8.59 7.97 -40.82 -0.33 8.26 16 46 H 0.11 2.24 8.06 -52.48 -0.42 1.82 16 47 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 48 H 0.07 0.66 7.55 -51.93 -0.39 0.27 16 49 H 0.08 0.90 7.88 -51.92 -0.41 0.49 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -32.36 397.49 -9.47 -41.84 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.83 Total: 6.02 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.35 Total: -19.97 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.28 Total: -38.94 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.09 Total: 18.51 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.36 -9.47 -41.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054306607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.608 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds