Wall clock time and date at job start Tue Mar 31 2020 18:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35658 * 116.99968 * 2 1 4 4 C 1.38705 * 120.15176 * 0.02562 * 3 2 1 5 5 C 1.38055 * 120.08673 * 179.97438 * 4 3 2 6 6 C 1.38548 * 120.38779 * 0.02562 * 5 4 3 7 7 C 1.37786 * 120.30208 * 359.97438 * 6 5 4 8 8 C 1.39708 * 119.90815 * 359.72873 * 7 6 5 9 9 C 1.47534 * 120.19673 * 180.29471 * 8 7 6 10 10 O 1.21593 * 120.00039 * 129.88120 * 9 8 7 11 11 N 1.34776 * 119.99967 * 309.88419 * 9 8 7 12 12 C 1.46934 * 120.62930 * 4.21158 * 11 9 8 13 13 C 1.53185 * 108.77577 * 233.58346 * 12 11 9 14 14 C 1.53039 * 109.31483 * 305.36726 * 13 12 11 15 15 C 1.53045 * 109.54111 * 61.36487 * 14 13 12 16 16 H 1.08996 * 109.49975 * 178.68613 * 15 14 13 17 17 C 1.52998 * 109.49735 * 58.61460 * 15 14 13 18 18 C 1.46925 * 120.63388 * 183.92669 * 11 9 8 19 19 H 1.09000 * 109.59032 * 246.20354 * 18 11 9 20 20 C 1.52999 * 109.58372 * 6.63217 * 18 11 9 21 21 N 1.46498 * 109.47062 * 283.66482 * 20 18 11 22 22 C 1.36942 * 119.99910 * 185.38895 * 21 20 18 23 23 H 1.07999 * 119.99953 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99850 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00066 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00083 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47057 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47311 * 119.99982 * 26 24 22 29 29 H 1.48497 * 109.47024 * 239.99868 * 26 24 22 30 30 H 1.08995 * 109.47358 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47487 * 59.99717 * 1 2 3 32 32 H 1.09002 * 109.46953 * 300.00065 * 1 2 3 33 33 H 1.08005 * 119.95738 * 359.97302 * 4 3 2 34 34 H 1.07998 * 119.80448 * 180.02562 * 5 4 3 35 35 H 1.07994 * 119.84911 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.04724 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.58589 * 353.37200 * 12 11 9 38 38 H 1.08997 * 109.58323 * 113.79832 * 12 11 9 39 39 H 1.09007 * 109.49622 * 65.31659 * 13 12 11 40 40 H 1.09001 * 109.50045 * 185.41433 * 13 12 11 41 41 H 1.09000 * 109.46313 * 181.38519 * 14 13 12 42 42 H 1.09006 * 109.45967 * 301.35754 * 14 13 12 43 43 H 1.09000 * 109.46489 * 60.01007 * 17 15 14 44 44 H 1.08996 * 109.46838 * 180.02562 * 17 15 14 45 45 H 1.08993 * 109.47307 * 300.00788 * 17 15 14 46 46 H 1.09006 * 109.47198 * 43.66490 * 20 18 11 47 47 H 1.09003 * 109.47158 * 163.66596 * 20 18 11 48 48 H 0.97005 * 120.00168 * 5.38740 * 21 20 18 49 49 H 0.96998 * 119.99907 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 0.0005 5 6 1.9206 3.6034 0.0011 6 6 3.3038 3.6837 0.0005 7 6 4.0668 2.5364 0.0000 8 6 3.4441 1.2857 0.0057 9 6 4.2549 0.0532 0.0118 10 8 4.0247 -0.8220 0.8239 11 7 5.2508 -0.1027 -0.8829 12 6 5.6012 0.9823 -1.8096 13 6 5.5728 0.4368 -3.2408 14 6 6.4851 -0.7884 -3.3337 15 6 5.9740 -1.8799 -2.3906 16 1 6.6106 -2.7607 -2.4746 17 6 4.5381 -2.2497 -2.7680 18 6 6.0108 -1.3586 -0.9459 19 1 7.0429 -1.1765 -0.6464 20 6 5.3763 -2.3895 -0.0103 21 7 5.7322 -2.0754 1.3757 22 6 5.3686 -2.9259 2.3855 23 1 4.8190 -3.8279 2.1602 24 6 5.7063 -2.6286 3.6987 25 7 6.3765 -1.5295 3.9731 26 14 5.2109 -3.7890 5.0761 27 1 4.4714 -4.9446 4.5079 28 1 6.4275 -4.2748 5.7758 29 1 4.3397 -3.0698 6.0399 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 0.2138 2.3195 0.0005 34 1 1.3304 4.5078 0.0019 35 1 3.7861 4.6499 0.0014 36 1 5.1446 2.6038 0.0000 37 1 4.8789 1.7929 -1.7131 38 1 6.6006 1.3513 -1.5790 39 1 4.5533 0.1519 -3.5013 40 1 5.9238 1.2049 -3.9300 41 1 6.4858 -1.1638 -4.3570 42 1 7.4993 -0.5083 -3.0490 43 1 4.5153 -2.6166 -3.7941 44 1 4.1745 -3.0267 -2.0957 45 1 3.9018 -1.3689 -2.6828 46 1 4.2923 -2.3629 -0.1220 47 1 5.7434 -3.3842 -0.2632 48 1 6.2255 -1.2651 1.5781 49 1 6.6122 -1.3216 4.8908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732544708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:13 Heat of formation + Delta-G solvation = 12.988737 kcal Electronic energy + Delta-G solvation = -30968.849977 eV Core-core repulsion = 27091.529961 eV Total energy + Delta-G solvation = -3877.320016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.69655 -39.55974 -37.38587 -36.92178 -34.43812 -33.21012 -31.97171 -30.98137 -30.14402 -29.91732 -27.38635 -26.85075 -25.97276 -24.29922 -23.16573 -22.70019 -22.03069 -21.02097 -19.95810 -18.53618 -17.71200 -17.08529 -16.41183 -16.15202 -15.71171 -15.33816 -15.09877 -14.91225 -14.78806 -14.37850 -14.14872 -13.85049 -13.66318 -13.33113 -13.27655 -12.92554 -12.71845 -12.42908 -12.33066 -12.26460 -12.08554 -11.93382 -11.55011 -11.41788 -11.29236 -11.05982 -11.02839 -10.90042 -10.73535 -10.63474 -10.53093 -10.22419 -10.08426 -9.72083 -9.40075 -8.91854 -8.60633 -8.32212 -8.04447 -7.87624 -6.41800 -5.44057 -2.63697 1.14300 1.44019 3.32042 3.40459 3.46730 3.61222 3.65868 3.68399 3.92990 4.69981 4.79821 4.83263 4.89716 4.91293 5.00148 5.04644 5.06772 5.15684 5.20313 5.30769 5.37916 5.41281 5.49798 5.53854 5.60225 5.64363 5.80041 5.84255 5.89509 5.90264 5.92836 6.00687 6.04873 6.11893 6.22815 6.25629 6.29564 6.31040 6.41723 6.45643 6.60373 6.66567 6.73233 6.83992 7.06284 7.42336 7.47363 7.98103 8.06289 8.74632 9.06580 9.85774 10.48267 10.82625 11.80466 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009123 B = 0.005454 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.361008 B = 5132.617680 C = 6671.162445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.293 6.293 3 C 0.170 3.830 4 C -0.218 4.218 5 C -0.071 4.071 6 C -0.166 4.166 7 C -0.056 4.056 8 C -0.143 4.143 9 C 0.528 3.472 10 O -0.429 6.429 11 N -0.607 5.607 12 C 0.101 3.899 13 C -0.135 4.135 14 C -0.112 4.112 15 C -0.099 4.099 16 H 0.078 0.922 17 C -0.143 4.143 18 C 0.149 3.851 19 H 0.068 0.932 20 C 0.160 3.840 21 N -0.700 5.700 22 C -0.200 4.200 23 H 0.064 0.936 24 C -0.025 4.025 25 N -0.940 5.940 26 Si 0.899 3.101 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.012 0.988 48 H 0.379 0.621 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 11.070 -18.153 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.205 6.205 3 C 0.122 3.878 4 C -0.236 4.236 5 C -0.089 4.089 6 C -0.184 4.184 7 C -0.075 4.075 8 C -0.147 4.147 9 C 0.312 3.688 10 O -0.297 6.297 11 N -0.345 5.345 12 C -0.023 4.023 13 C -0.174 4.174 14 C -0.150 4.150 15 C -0.119 4.119 16 H 0.096 0.904 17 C -0.200 4.200 18 C 0.045 3.955 19 H 0.086 0.914 20 C 0.032 3.968 21 N -0.343 5.343 22 C -0.332 4.332 23 H 0.082 0.918 24 C -0.219 4.219 25 N -0.591 5.591 26 Si 0.732 3.268 27 H -0.209 1.209 28 H -0.224 1.224 29 H -0.224 1.224 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.029 0.971 48 H 0.212 0.788 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.725 10.179 -17.577 21.731 hybrid contribution -0.370 0.080 0.934 1.008 sum -8.095 10.259 -16.643 21.160 Atomic orbital electron populations 1.23077 0.78734 1.04126 1.00864 1.86243 1.20886 1.26042 1.87306 1.18964 0.90960 0.84627 0.93224 1.21159 0.99965 0.92198 1.10306 1.20976 0.94688 0.96785 0.96433 1.20940 0.93799 0.98282 1.05426 1.21204 1.00190 0.90611 0.95466 1.19569 0.90990 0.95154 1.08943 1.18014 0.81377 0.87150 0.82225 1.91253 1.65318 1.39149 1.33932 1.47755 1.35430 1.15092 1.36222 1.21894 1.00956 0.90525 0.88897 1.21953 1.00877 0.97883 0.96641 1.21533 0.98938 0.95404 0.99117 1.21546 0.97682 0.98017 0.94688 0.90375 1.21819 0.96166 1.01823 1.00180 1.21582 0.95313 0.84112 0.94450 0.91379 1.20960 0.98199 0.92462 0.85158 1.42181 1.65864 1.26221 1.00013 1.19192 1.26658 1.00559 0.86836 0.91817 1.24586 1.02511 0.97894 0.96871 1.69670 1.45910 1.25796 1.17735 0.86186 0.77402 0.80084 0.83108 1.20907 1.22423 1.22416 0.88148 0.92965 0.92646 0.85313 0.85846 0.85650 0.84820 0.89420 0.91963 0.91338 0.91479 0.92148 0.91943 0.93549 0.92114 0.92464 0.93610 0.97082 0.78816 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.29 -4.94 9.58 -26.47 -0.25 -5.19 16 3 C 0.17 2.71 6.68 -38.69 -0.26 2.45 16 4 C -0.22 -2.70 9.03 -39.48 -0.36 -3.06 16 5 C -0.07 -0.77 10.03 -39.53 -0.40 -1.16 16 6 C -0.17 -1.88 10.02 -39.63 -0.40 -2.28 16 7 C -0.06 -0.77 7.34 -39.20 -0.29 -1.06 16 8 C -0.14 -2.42 5.05 -104.84 -0.53 -2.95 16 9 C 0.53 10.57 6.67 -12.47 -0.08 10.49 16 10 O -0.43 -10.89 10.59 -2.51 -0.03 -10.92 16 11 N -0.61 -10.16 2.40 -166.18 -0.40 -10.56 16 12 C 0.10 1.25 5.35 -3.71 -0.02 1.23 16 13 C -0.14 -1.42 5.74 -26.62 -0.15 -1.57 16 14 C -0.11 -1.23 5.43 -26.69 -0.14 -1.38 16 15 C -0.10 -1.37 2.76 -90.27 -0.25 -1.62 16 16 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.14 -1.96 8.26 37.16 0.31 -1.65 16 18 C 0.15 2.63 2.62 -67.37 -0.18 2.45 16 19 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 20 C 0.16 3.60 3.87 -4.04 -0.02 3.58 16 21 N -0.70 -19.47 3.34 -59.91 -0.20 -19.67 16 22 C -0.20 -6.15 9.82 -15.06 -0.15 -6.30 16 23 H 0.06 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.02 -0.77 5.50 -17.43 -0.10 -0.87 16 25 N -0.94 -30.78 13.06 55.49 0.72 -30.06 16 26 Si 0.90 24.48 29.55 -169.99 -5.02 19.46 16 27 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 29 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.13 1.27 6.30 -52.48 -0.33 0.93 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.69 6.99 -52.49 -0.37 1.32 16 37 H 0.09 1.02 4.49 -51.93 -0.23 0.78 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.77 6.34 -51.92 -0.33 0.44 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.94 6.76 -51.93 -0.35 0.59 16 45 H 0.06 0.83 5.97 -51.93 -0.31 0.52 16 46 H 0.05 1.13 5.27 -51.93 -0.27 0.85 16 47 H 0.01 0.26 8.06 -51.93 -0.42 -0.16 16 48 H 0.38 11.22 7.49 -40.82 -0.31 10.91 16 49 H 0.25 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -37.44 374.21 -9.04 -46.48 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.49 Total: 7.22 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.01 Total: -2.40 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.13 Total: -60.29 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.28 Total: -16.11 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.02 Total: 19.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.44 -9.04 -46.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732544708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.469 kcal (2) G-P(sol) polarization free energy of solvation -37.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds