Wall clock time and date at job start Tue Mar 31 2020 17:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 O 1.42904 * 109.47036 * 119.99805 * 2 1 3 5 5 C 1.35654 * 116.99707 * 154.83673 * 4 2 1 6 6 C 1.38713 * 120.15439 * 6.47760 * 5 4 2 7 7 C 1.38049 * 120.08735 * 179.97438 * 6 5 4 8 8 C 1.38546 * 120.38866 * 359.97438 * 7 6 5 9 9 C 1.37789 * 120.30169 * 359.73361 * 8 7 6 10 10 C 1.39703 * 119.90481 * 0.54142 * 9 8 7 11 11 C 1.47538 * 120.19199 * 179.73743 * 10 9 8 12 12 O 1.21587 * 120.00689 * 226.22254 * 11 10 9 13 13 N 1.34784 * 119.99783 * 46.22092 * 11 10 9 14 14 C 1.47415 * 125.64802 * 175.50933 * 13 11 10 15 15 C 1.54916 * 104.83103 * 204.08514 * 14 13 11 16 16 H 1.09000 * 111.00352 * 81.06885 * 15 14 13 17 17 C 1.53005 * 111.00315 * 204.91704 * 15 14 13 18 18 C 1.55158 * 101.58250 * 322.99189 * 15 14 13 19 19 H 1.08998 * 110.71948 * 277.13934 * 18 15 14 20 20 N 1.46491 * 110.71924 * 154.04283 * 18 15 14 21 21 C 1.36940 * 119.99955 * 154.99807 * 20 18 15 22 22 H 1.07999 * 119.99813 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00036 * 179.97438 * 21 20 18 24 24 N 1.31618 * 119.99863 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00196 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47410 * 89.99928 * 25 23 21 27 27 H 1.48499 * 109.47411 * 209.99798 * 25 23 21 28 28 H 1.48509 * 109.47098 * 329.99767 * 25 23 21 29 29 C 1.47023 * 125.64439 * 355.45918 * 13 11 10 30 30 H 1.09000 * 109.46984 * 300.00428 * 1 2 3 31 31 H 1.09004 * 109.47056 * 60.00400 * 1 2 3 32 32 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47393 * 239.99581 * 2 1 3 34 34 H 1.08993 * 109.47204 * 59.99748 * 3 2 1 35 35 H 1.09003 * 109.46973 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46827 * 299.99741 * 3 2 1 37 37 H 1.08000 * 119.95334 * 359.97438 * 6 5 4 38 38 H 1.08002 * 119.80660 * 179.97438 * 7 6 5 39 39 H 1.08008 * 119.85107 * 179.97438 * 8 7 6 40 40 H 1.07999 * 120.04713 * 180.27581 * 9 8 7 41 41 H 1.09000 * 110.37032 * 85.25132 * 14 13 11 42 42 H 1.08997 * 110.37069 * 322.92162 * 14 13 11 43 43 H 1.09002 * 109.46903 * 172.19904 * 17 15 14 44 44 H 1.08996 * 109.47219 * 292.19623 * 17 15 14 45 45 H 1.09002 * 109.47142 * 52.19410 * 17 15 14 46 46 H 0.96994 * 120.00474 * 334.99959 * 20 18 15 47 47 H 0.97004 * 119.99953 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.88391 * 59.57003 * 29 13 11 49 49 H 1.08995 * 110.01339 * 298.47390 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2430 -1.2267 1.0969 6 6 4.0402 -1.0122 -0.0178 7 6 5.2987 -1.5752 -0.0873 8 6 5.7753 -2.3567 0.9527 9 6 4.9994 -2.5753 2.0701 10 6 3.7216 -2.0163 2.1511 11 6 2.8831 -2.2510 3.3421 12 8 1.7154 -2.5636 3.2116 13 7 3.4116 -2.1191 4.5749 14 6 2.6701 -2.2313 5.8441 15 6 3.5078 -1.4223 6.8656 16 1 3.3041 -0.3549 6.7798 17 6 3.2560 -1.9133 8.2927 18 6 4.9547 -1.7506 6.4117 19 1 5.2823 -2.7037 6.8270 20 7 5.8744 -0.6768 6.7950 21 6 7.2059 -0.9453 6.9690 22 1 7.5780 -1.9487 6.8234 23 6 8.0776 0.0723 7.3317 24 7 9.3574 -0.1857 7.4985 25 14 7.4342 1.8078 7.5830 26 1 7.0307 1.9858 9.0010 27 1 8.5005 2.7848 7.2456 28 1 6.2599 2.0329 6.7021 29 6 4.8233 -1.8404 4.8766 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 3.6758 -0.4038 -0.8324 38 1 5.9154 -1.4056 -0.9576 39 1 6.7612 -2.7933 0.8890 40 1 5.3767 -3.1815 2.8804 41 1 2.6008 -3.2746 6.1520 42 1 1.6751 -1.7982 5.7418 43 1 3.9547 -1.4264 8.9731 44 1 2.2346 -1.6703 8.5856 45 1 3.3992 -2.9930 8.3360 46 1 5.5404 0.2244 6.9255 47 1 9.9664 0.5253 7.7523 48 1 5.1195 -0.8945 4.4234 49 1 5.4519 -2.6460 4.4972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939577708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:15 Heat of formation + Delta-G solvation = -28.890286 kcal Electronic energy + Delta-G solvation = -29406.986650 eV Core-core repulsion = 25527.850623 eV Total energy + Delta-G solvation = -3879.136027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72901 -39.50835 -37.78467 -37.26724 -34.17929 -33.42635 -32.69655 -31.24937 -30.84560 -29.87195 -27.91446 -27.51811 -26.39001 -24.19928 -23.47926 -23.00075 -21.33635 -20.90219 -20.17116 -19.68680 -18.11060 -17.58542 -17.02757 -16.36465 -15.78655 -15.65496 -15.48435 -15.05903 -14.65555 -14.37369 -14.26282 -13.94647 -13.59242 -13.40445 -13.18638 -13.09528 -12.94338 -12.60874 -12.57698 -12.49364 -12.44884 -12.19409 -12.00717 -11.85633 -11.66411 -11.52724 -11.27366 -11.12930 -11.00326 -10.88381 -10.77173 -10.61729 -10.37320 -10.00932 -9.70740 -9.63053 -9.10414 -8.99479 -8.36372 -8.22234 -7.40564 -5.85912 -3.23390 0.97265 1.34621 2.91620 3.02204 3.22095 3.32302 3.35523 3.40941 3.76154 4.47270 4.51362 4.56087 4.63102 4.69274 4.82156 4.82758 4.97229 5.06419 5.08749 5.11610 5.25363 5.26757 5.33233 5.45245 5.47033 5.52191 5.52520 5.60034 5.69182 5.73273 5.75657 5.82245 5.85511 5.89677 5.91771 6.10715 6.11085 6.15294 6.22395 6.30174 6.38163 6.41989 6.49553 6.56758 6.64873 6.77318 7.32024 7.78374 7.89005 8.32871 8.41240 9.09533 9.82053 10.00472 11.31769 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011274 B = 0.003666 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.949006 B = 7635.421040 C = 8338.211830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.182 4.182 4 O -0.291 6.291 5 C 0.178 3.822 6 C -0.221 4.221 7 C -0.061 4.061 8 C -0.161 4.161 9 C -0.047 4.047 10 C -0.159 4.159 11 C 0.581 3.419 12 O -0.537 6.537 13 N -0.611 5.611 14 C 0.117 3.883 15 C -0.119 4.119 16 H 0.080 0.920 17 C -0.134 4.134 18 C 0.182 3.818 19 H 0.078 0.922 20 N -0.735 5.735 21 C -0.251 4.251 22 H 0.093 0.907 23 C 0.011 3.989 24 N -0.929 5.929 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 C 0.072 3.928 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.364 0.636 47 H 0.261 0.739 48 H 0.072 0.928 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.994 -1.419 -14.900 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.019 3.981 3 C -0.239 4.239 4 O -0.204 6.204 5 C 0.130 3.870 6 C -0.240 4.240 7 C -0.079 4.079 8 C -0.179 4.179 9 C -0.065 4.065 10 C -0.162 4.162 11 C 0.369 3.631 12 O -0.415 6.415 13 N -0.344 5.344 14 C -0.006 4.006 15 C -0.139 4.139 16 H 0.099 0.901 17 C -0.192 4.192 18 C 0.070 3.930 19 H 0.096 0.904 20 N -0.376 5.376 21 C -0.381 4.381 22 H 0.110 0.890 23 C -0.186 4.186 24 N -0.576 5.576 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.054 4.054 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.197 0.803 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.538 -1.675 -14.838 20.840 hybrid contribution 0.006 1.506 -0.142 1.512 sum -14.532 -0.170 -14.980 20.871 Atomic orbital electron populations 1.21829 0.92328 1.03399 1.02876 1.22491 0.95725 0.92566 0.87343 1.22413 1.02263 0.95986 1.03239 1.86242 1.28856 1.67060 1.38232 1.18860 0.84490 0.90835 0.92779 1.21209 0.96615 1.07181 0.98989 1.21080 0.94406 0.94244 0.98176 1.21023 1.00807 1.01861 0.94256 1.21357 0.90871 0.96375 0.97901 1.19191 0.96464 1.04951 0.95625 1.17645 0.86432 0.77185 0.81788 1.90754 1.16872 1.47827 1.86020 1.48409 1.11074 1.70144 1.04815 1.22234 0.95847 0.99989 0.82547 1.22699 0.96400 1.00032 0.94745 0.90147 1.21618 1.01121 1.01240 0.95188 1.21226 0.88223 0.93666 0.89836 0.90400 1.42710 1.05767 1.06298 1.82843 1.19070 0.81888 0.96960 1.40149 0.88953 1.24654 0.95223 0.97497 1.01199 1.69694 1.02102 1.32364 1.53446 0.86608 0.77975 0.86106 0.78179 1.20921 1.21668 1.20302 1.23367 0.79979 1.01114 1.00949 0.91390 0.90650 0.91444 0.90897 0.91278 0.91713 0.90981 0.84935 0.85498 0.85130 0.84356 0.91431 0.90947 0.91406 0.93096 0.92505 0.80280 0.92925 0.90968 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.56 37.16 0.36 -0.96 16 2 C 0.07 0.77 2.84 -26.73 -0.08 0.70 16 3 C -0.18 -1.62 9.17 37.16 0.34 -1.28 16 4 O -0.29 -4.33 8.77 -30.29 -0.27 -4.59 16 5 C 0.18 2.61 6.58 -38.69 -0.25 2.36 16 6 C -0.22 -2.59 8.23 -39.48 -0.33 -2.92 16 7 C -0.06 -0.66 10.03 -39.54 -0.40 -1.05 16 8 C -0.16 -1.91 10.02 -39.63 -0.40 -2.31 16 9 C -0.05 -0.65 8.52 -39.20 -0.33 -0.98 16 10 C -0.16 -2.53 5.45 -104.85 -0.57 -3.10 16 11 C 0.58 10.39 7.16 -12.47 -0.09 10.30 16 12 O -0.54 -10.97 16.71 -6.33 -0.11 -11.07 16 13 N -0.61 -10.16 3.33 -171.75 -0.57 -10.73 16 14 C 0.12 1.75 6.36 -2.53 -0.02 1.73 16 15 C -0.12 -1.80 3.27 -88.46 -0.29 -2.09 16 16 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 17 C -0.13 -1.79 9.31 37.16 0.35 -1.44 16 18 C 0.18 3.26 3.08 -66.10 -0.20 3.06 16 19 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 20 N -0.74 -16.18 4.96 -51.66 -0.26 -16.44 16 21 C -0.25 -6.62 10.44 -15.06 -0.16 -6.78 16 22 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -28.05 13.97 55.49 0.78 -27.28 16 25 Si 0.88 21.33 27.74 -169.99 -4.71 16.61 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 29 C 0.07 1.22 5.37 -3.06 -0.02 1.20 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.65 6.35 -51.93 -0.33 0.32 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.61 6.86 -51.93 -0.36 0.25 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.13 1.22 5.40 -52.49 -0.28 0.94 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.14 1.82 5.82 -52.49 -0.31 1.52 16 41 H 0.07 0.94 7.98 -51.93 -0.41 0.52 16 42 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 46 H 0.36 8.03 5.62 -40.82 -0.23 7.80 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.07 1.35 8.03 -51.93 -0.42 0.94 16 49 H 0.07 1.05 5.92 -51.93 -0.31 0.74 16 LS Contribution 390.72 15.07 5.89 5.89 Total: -1.00 -32.86 390.72 -9.14 -42.00 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.71 Total: 8.97 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.18 Total: -3.36 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.05 Total: -54.45 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.37 Total: -15.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.86 -9.14 -42.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939577708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.109 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds