Wall clock time and date at job start Tue Mar 31 2020 17:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.44789 * 120.17653 * 359.97438 * 7 5 4 9 9 C 1.51519 * 112.22750 * 264.55472 * 8 7 5 10 10 C 1.51310 * 113.25069 * 285.37046 * 9 8 7 11 11 H 1.09004 * 111.31382 * 186.10358 * 10 9 8 12 12 C 1.54721 * 106.48492 * 307.66192 * 10 9 8 13 13 C 1.54238 * 104.37371 * 89.11552 * 12 10 9 14 14 C 1.50873 * 105.27093 * 11.56779 * 13 12 10 15 15 H 1.08996 * 106.52172 * 122.52653 * 14 13 12 16 16 C 1.49808 * 120.18201 * 179.72675 * 7 5 4 17 17 N 1.48653 * 109.01806 * 62.91694 * 10 9 8 18 18 C 1.36939 * 127.83883 * 97.34169 * 17 10 9 19 19 H 1.08000 * 120.00483 * 359.97438 * 18 17 10 20 20 C 1.38816 * 119.99734 * 180.02562 * 18 17 10 21 21 N 1.31618 * 120.00436 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46789 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47265 * 119.99375 * 22 20 18 25 25 H 1.48498 * 109.46861 * 239.99846 * 22 20 18 26 26 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 27 27 C 1.34517 * 125.78655 * 119.71480 * 26 2 1 28 28 C 1.41381 * 106.83930 * 179.89069 * 27 26 2 29 29 C 1.34514 * 106.84144 * 0.37830 * 28 27 26 30 30 O 1.34297 * 108.41965 * 359.76631 * 29 28 27 31 31 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 32 32 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 33 33 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 35 35 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 36 36 H 1.09004 * 108.93618 * 25.26160 * 8 7 5 37 37 H 1.09002 * 108.93206 * 143.85157 * 8 7 5 38 38 H 1.08996 * 108.72636 * 46.34217 * 9 8 7 39 39 H 1.09004 * 108.72658 * 164.51640 * 9 8 7 40 40 H 1.08995 * 110.45636 * 207.83991 * 12 10 9 41 41 H 1.09000 * 110.44747 * 330.39906 * 12 10 9 42 42 H 1.09003 * 110.27748 * 130.50844 * 13 12 10 43 43 H 1.08995 * 110.28529 * 252.51951 * 13 12 10 44 44 H 1.09003 * 109.54737 * 270.55042 * 16 7 5 45 45 H 1.08996 * 109.55126 * 30.82820 * 16 7 5 46 46 H 0.96996 * 120.00536 * 180.02562 * 21 20 18 47 47 H 1.07995 * 126.58238 * 0.03349 * 27 26 2 48 48 H 1.07999 * 126.58101 * 180.12492 * 28 27 26 49 49 H 1.08002 * 125.78994 * 179.79585 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0118 1.0875 2.3632 7 7 1.9852 -0.3913 3.7002 8 6 2.7372 -1.6206 3.8400 9 6 1.8409 -2.8146 4.0985 10 6 1.2913 -2.8549 5.5077 11 1 0.7406 -3.7774 5.6919 12 6 2.5063 -2.7246 6.4567 13 6 2.6734 -1.2046 6.6582 14 6 1.4213 -0.5878 6.0855 15 1 0.9640 -0.0113 6.8895 16 6 1.5963 0.3824 4.9226 17 7 0.4342 -1.6605 5.7277 18 6 -0.9293 -1.5759 5.6326 19 1 -1.5075 -2.4491 5.3689 20 6 -1.5682 -0.3674 5.8740 21 7 -0.8636 0.6970 6.1949 22 14 -3.4281 -0.2518 5.7436 23 1 -3.9815 -1.5784 5.3708 24 1 -3.9908 0.1700 7.0515 25 1 -3.7903 0.7451 4.7042 26 6 2.0324 -0.7105 -1.2304 27 6 2.8045 -0.1705 -2.1904 28 6 3.0378 -1.1849 -3.1472 29 6 2.3874 -2.2817 -2.7189 30 8 1.7802 -1.9885 -1.5574 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 3.3033 -1.7950 2.9249 37 1 3.4349 -1.5158 4.6708 38 1 1.0063 -2.7838 3.3981 39 1 2.4121 -3.7259 3.9212 40 1 2.3007 -3.2146 7.4083 41 1 3.3980 -3.1477 5.9940 42 1 2.7580 -0.9713 7.7196 43 1 3.5522 -0.8466 6.1219 44 1 2.3769 1.1050 5.1605 45 1 0.6572 0.9049 4.7402 46 1 -1.3101 1.5414 6.3639 47 1 3.1769 0.8427 -2.2229 48 1 3.6224 -1.0952 -4.0509 49 1 2.3587 -3.2363 -3.2232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045879110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:34 Heat of formation + Delta-G solvation = 20.628162 kcal Electronic energy + Delta-G solvation = -30618.858732 eV Core-core repulsion = 26741.869986 eV Total energy + Delta-G solvation = -3876.988746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.58757 -39.92143 -38.22251 -34.90524 -34.19907 -32.94915 -32.88806 -31.58828 -29.42463 -28.97733 -28.00728 -26.68998 -25.75901 -23.81770 -22.96942 -21.94166 -21.69251 -20.11187 -19.46401 -19.26393 -18.05014 -17.40380 -16.91713 -16.25597 -15.95900 -15.36597 -15.21203 -14.73761 -14.57676 -14.33570 -13.99526 -13.67475 -13.33784 -12.96615 -12.83663 -12.78153 -12.66621 -12.47232 -12.22361 -12.03348 -11.85589 -11.47811 -11.35220 -11.19456 -11.13692 -11.02533 -10.89065 -10.78485 -10.74065 -10.67466 -10.17168 -9.94277 -9.91153 -9.68258 -9.52547 -9.41710 -8.93900 -8.62311 -8.43970 -7.70706 -6.86349 -5.69880 -3.05918 1.73626 2.59389 3.00728 3.33436 3.42369 3.47447 3.50869 3.80028 4.47745 4.63518 4.89974 4.98456 5.05457 5.15380 5.19695 5.28655 5.31859 5.45004 5.52441 5.57110 5.60326 5.70005 5.76560 5.77647 5.83744 5.87573 5.92751 5.96348 6.05510 6.12797 6.16134 6.25890 6.26537 6.30232 6.45740 6.47508 6.48443 6.60222 6.67872 6.70406 6.80642 6.98501 7.05306 7.16005 7.26906 7.50956 7.65472 7.87431 8.23322 8.31545 8.95190 9.15248 9.77470 10.51433 11.38949 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.004069 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.090257 B = 6879.653915 C = 7874.788566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.007 3.993 3 H 0.106 0.894 4 C -0.135 4.135 5 C 0.511 3.489 6 O -0.546 6.546 7 N -0.590 5.590 8 C 0.107 3.893 9 C -0.150 4.150 10 C 0.150 3.850 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.123 4.123 14 C 0.141 3.859 15 H 0.097 0.903 16 C 0.127 3.873 17 N -0.580 5.580 18 C -0.208 4.208 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.911 3.089 23 H -0.282 1.282 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.009 3.991 27 C -0.219 4.219 28 C -0.214 4.214 29 C -0.051 4.051 30 O -0.172 6.172 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.127 0.873 46 H 0.253 0.747 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.143 -5.695 -10.854 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 H 0.124 0.876 4 C -0.175 4.175 5 C 0.298 3.702 6 O -0.425 6.425 7 N -0.322 5.322 8 C -0.017 4.017 9 C -0.191 4.191 10 C 0.042 3.958 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.162 4.162 14 C 0.034 3.966 15 H 0.115 0.885 16 C 0.006 3.994 17 N -0.303 5.303 18 C -0.336 4.336 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.742 3.258 23 H -0.208 1.208 24 H -0.219 1.219 25 H -0.217 1.217 26 C -0.042 4.042 27 C -0.238 4.238 28 C -0.233 4.233 29 C -0.119 4.119 30 O -0.067 6.067 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.145 0.855 46 H 0.063 0.937 47 H 0.164 0.836 48 H 0.163 0.837 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 10.371 -5.185 -10.665 15.753 hybrid contribution -0.642 -0.046 -0.477 0.801 sum 9.729 -5.231 -11.142 15.690 Atomic orbital electron populations 1.21971 0.92880 1.02359 1.03759 1.19560 0.97397 0.97743 0.86447 0.87619 1.21771 1.02177 1.00769 0.92811 1.20243 0.79761 0.85739 0.84452 1.90628 1.40309 1.25289 1.86298 1.48452 1.53859 1.23146 1.06694 1.21002 0.94116 0.85198 1.01388 1.22048 0.99466 0.96492 1.01121 1.21096 0.90815 0.92353 0.91514 0.92249 1.22677 0.98223 0.96321 0.99705 1.21933 0.98337 0.95777 1.00119 1.20890 0.88006 0.90720 0.96936 0.88522 1.23213 1.01395 0.92865 0.81940 1.45378 1.00905 1.03503 1.80482 1.18985 0.79456 0.95526 1.39619 0.90352 1.24655 0.97836 0.95554 1.02239 1.69691 1.33061 1.00247 1.53621 0.86050 0.85178 0.77381 0.77198 1.20770 1.21888 1.21722 1.22668 1.00378 0.82313 0.98804 1.21593 1.04864 1.01236 0.96142 1.21792 1.05587 0.93668 1.02274 1.23986 0.99596 1.00870 0.87415 1.84032 1.59233 1.28309 1.35167 0.88996 0.92901 0.92835 0.88902 0.89476 0.92421 0.90223 0.92347 0.92859 0.92441 0.92154 0.92255 0.92277 0.95139 0.85528 0.93671 0.83628 0.83741 0.78410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.92 37.16 0.33 -2.10 16 2 C 0.01 0.11 2.44 -91.77 -0.22 -0.12 16 3 H 0.11 1.54 7.91 -51.93 -0.41 1.13 16 4 C -0.14 -2.05 3.64 -27.88 -0.10 -2.15 16 5 C 0.51 9.98 7.41 -10.98 -0.08 9.90 16 6 O -0.55 -12.55 13.62 5.56 0.08 -12.47 16 7 N -0.59 -11.47 2.86 -173.50 -0.50 -11.97 16 8 C 0.11 1.70 4.98 -5.71 -0.03 1.67 16 9 C -0.15 -2.49 5.01 -28.33 -0.14 -2.64 16 10 C 0.15 2.83 4.02 -66.69 -0.27 2.57 16 11 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 12 C -0.13 -2.07 6.02 -25.18 -0.15 -2.22 16 13 C -0.12 -2.13 5.78 -27.15 -0.16 -2.28 16 14 C 0.14 3.08 2.00 -67.26 -0.13 2.94 16 15 H 0.10 2.48 6.21 -51.93 -0.32 2.16 16 16 C 0.13 2.83 5.76 -2.48 -0.01 2.82 16 17 N -0.58 -13.64 2.77 -155.18 -0.43 -14.07 16 18 C -0.21 -5.54 10.43 -15.06 -0.16 -5.70 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -25.56 8.33 55.49 0.46 -25.10 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 C 0.01 0.12 5.83 -35.62 -0.21 -0.09 16 27 C -0.22 -2.67 10.78 -39.70 -0.43 -3.10 16 28 C -0.21 -2.28 10.91 -39.70 -0.43 -2.71 16 29 C -0.05 -0.54 12.09 29.42 0.36 -0.18 16 30 O -0.17 -2.31 10.65 5.73 0.06 -2.25 16 31 H 0.09 1.75 5.95 -51.93 -0.31 1.44 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 35 H 0.09 1.14 7.40 -51.93 -0.38 0.76 16 36 H 0.06 0.77 6.20 -51.93 -0.32 0.45 16 37 H 0.08 1.20 3.93 -51.93 -0.20 1.00 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.91 6.15 -51.93 -0.32 0.59 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.13 3.43 5.39 -51.93 -0.28 3.15 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 47 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 48 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 49 H 0.20 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -30.65 370.69 -9.26 -39.91 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.55 Total: 6.87 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.94 Total: -3.69 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.46 Total: -51.14 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.14 Total: -14.72 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.65 -9.26 -39.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045879110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.537 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds