Wall clock time and date at job start Tue Mar 31 2020 17:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.44789 * 120.17653 * 359.97438 * 7 5 4 9 9 C 1.51519 * 112.22750 * 264.55472 * 8 7 5 10 10 C 1.51310 * 113.25069 * 285.37046 * 9 8 7 11 11 H 1.09004 * 111.31382 * 186.10358 * 10 9 8 12 12 C 1.54721 * 106.48492 * 307.66192 * 10 9 8 13 13 C 1.54238 * 104.37371 * 89.11552 * 12 10 9 14 14 C 1.50873 * 105.27093 * 11.56779 * 13 12 10 15 15 H 1.08996 * 106.52172 * 122.52653 * 14 13 12 16 16 C 1.49808 * 120.18201 * 179.72675 * 7 5 4 17 17 N 1.48653 * 109.01806 * 62.91694 * 10 9 8 18 18 C 1.36939 * 127.83883 * 97.34169 * 17 10 9 19 19 H 1.08000 * 120.00483 * 359.97438 * 18 17 10 20 20 C 1.38816 * 119.99734 * 180.02562 * 18 17 10 21 21 N 1.31618 * 120.00436 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46789 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47265 * 119.99375 * 22 20 18 25 25 H 1.48498 * 109.46861 * 239.99846 * 22 20 18 26 26 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 27 27 C 1.34517 * 125.78655 * 119.71480 * 26 2 1 28 28 C 1.41381 * 106.83930 * 179.89069 * 27 26 2 29 29 C 1.34514 * 106.84144 * 0.37830 * 28 27 26 30 30 O 1.34297 * 108.41965 * 359.76631 * 29 28 27 31 31 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 32 32 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 33 33 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 35 35 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 36 36 H 1.09004 * 108.93618 * 25.26160 * 8 7 5 37 37 H 1.09002 * 108.93206 * 143.85157 * 8 7 5 38 38 H 1.08996 * 108.72636 * 46.34217 * 9 8 7 39 39 H 1.09004 * 108.72658 * 164.51640 * 9 8 7 40 40 H 1.08995 * 110.45636 * 207.83991 * 12 10 9 41 41 H 1.09000 * 110.44747 * 330.39906 * 12 10 9 42 42 H 1.09003 * 110.27748 * 130.50844 * 13 12 10 43 43 H 1.08995 * 110.28529 * 252.51951 * 13 12 10 44 44 H 1.09003 * 109.54737 * 270.55042 * 16 7 5 45 45 H 1.08996 * 109.55126 * 30.82820 * 16 7 5 46 46 H 0.96996 * 120.00536 * 180.02562 * 21 20 18 47 47 H 1.07995 * 126.58238 * 0.03349 * 27 26 2 48 48 H 1.07999 * 126.58101 * 180.12492 * 28 27 26 49 49 H 1.08002 * 125.78994 * 179.79585 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0118 1.0875 2.3632 7 7 1.9852 -0.3913 3.7002 8 6 2.7372 -1.6206 3.8400 9 6 1.8409 -2.8146 4.0985 10 6 1.2913 -2.8549 5.5077 11 1 0.7406 -3.7774 5.6919 12 6 2.5063 -2.7246 6.4567 13 6 2.6734 -1.2046 6.6582 14 6 1.4213 -0.5878 6.0855 15 1 0.9640 -0.0113 6.8895 16 6 1.5963 0.3824 4.9226 17 7 0.4342 -1.6605 5.7277 18 6 -0.9293 -1.5759 5.6326 19 1 -1.5075 -2.4491 5.3689 20 6 -1.5682 -0.3674 5.8740 21 7 -0.8636 0.6970 6.1949 22 14 -3.4281 -0.2518 5.7436 23 1 -3.9815 -1.5784 5.3708 24 1 -3.9908 0.1700 7.0515 25 1 -3.7903 0.7451 4.7042 26 6 2.0324 -0.7105 -1.2304 27 6 2.8045 -0.1705 -2.1904 28 6 3.0378 -1.1849 -3.1472 29 6 2.3874 -2.2817 -2.7189 30 8 1.7802 -1.9885 -1.5574 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 3.3033 -1.7950 2.9249 37 1 3.4349 -1.5158 4.6708 38 1 1.0063 -2.7838 3.3981 39 1 2.4121 -3.7259 3.9212 40 1 2.3007 -3.2146 7.4083 41 1 3.3980 -3.1477 5.9940 42 1 2.7580 -0.9713 7.7196 43 1 3.5522 -0.8466 6.1219 44 1 2.3769 1.1050 5.1605 45 1 0.6572 0.9049 4.7402 46 1 -1.3101 1.5414 6.3639 47 1 3.1769 0.8427 -2.2229 48 1 3.6224 -1.0952 -4.0509 49 1 2.3587 -3.2363 -3.2232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045879110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:33 Heat of formation + Delta-G solvation = 3.457676 kcal Electronic energy + Delta-G solvation = -30619.603300 eV Core-core repulsion = 26741.869986 eV Total energy + Delta-G solvation = -3877.733314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.48052 -41.42516 -39.74228 -36.14858 -35.80665 -34.71489 -33.80566 -33.16678 -31.23471 -30.07309 -29.24549 -28.09776 -27.37373 -25.61718 -24.23116 -23.18009 -22.61265 -21.28909 -21.01388 -20.72737 -19.49487 -18.77107 -18.31654 -17.53698 -17.00964 -16.81020 -16.75220 -16.45641 -16.02001 -15.73312 -15.48899 -15.10127 -14.67738 -14.43731 -14.15542 -14.06855 -13.67823 -13.65739 -13.51274 -13.47309 -13.33795 -13.01396 -12.99487 -12.70871 -12.64511 -12.55533 -12.41196 -12.39072 -12.14261 -11.98050 -11.94714 -11.55949 -11.36543 -11.25270 -10.91182 -10.80093 -10.70492 -10.30931 -9.35013 -9.29278 -8.77700 -7.75939 -5.09976 0.84481 1.40564 1.43785 1.50499 1.75167 1.82289 2.12186 2.35334 2.50091 3.37505 3.53982 3.63651 3.72717 3.95753 3.97192 4.03984 4.12258 4.17954 4.20937 4.29570 4.32674 4.38448 4.48551 4.58292 4.61312 4.67960 4.76035 4.81847 4.85737 4.93176 4.93465 4.96874 5.04705 5.12434 5.14056 5.17316 5.19421 5.28446 5.34703 5.38093 5.40057 5.53317 5.62279 5.66587 5.73549 5.90698 6.01850 6.27995 6.32775 6.81260 7.12695 7.45055 7.80579 8.56876 9.29442 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.004069 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.090257 B = 6879.653915 C = 7874.788566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.014 3.986 3 H 0.101 0.899 4 C -0.119 4.119 5 C 0.499 3.501 6 O -0.592 6.592 7 N -0.592 5.592 8 C 0.100 3.900 9 C -0.142 4.142 10 C 0.135 3.865 11 H 0.055 0.945 12 C -0.116 4.116 13 C -0.117 4.117 14 C 0.150 3.850 15 H 0.048 0.952 16 C 0.132 3.868 17 N -0.603 5.603 18 C -0.209 4.209 19 H 0.074 0.926 20 C -0.060 4.060 21 N -0.932 5.932 22 Si 0.958 3.042 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.307 1.307 26 C -0.016 4.016 27 C -0.217 4.217 28 C -0.223 4.223 29 C -0.045 4.045 30 O -0.190 6.190 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.027 0.973 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.036 0.964 45 H 0.074 0.926 46 H 0.240 0.760 47 H 0.156 0.844 48 H 0.170 0.830 49 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.345 -8.571 -12.663 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.005 4.005 3 H 0.119 0.881 4 C -0.159 4.159 5 C 0.288 3.712 6 O -0.474 6.474 7 N -0.323 5.323 8 C -0.023 4.023 9 C -0.183 4.183 10 C 0.029 3.971 11 H 0.073 0.927 12 C -0.154 4.154 13 C -0.155 4.155 14 C 0.044 3.956 15 H 0.066 0.934 16 C 0.009 3.991 17 N -0.327 5.327 18 C -0.338 4.338 19 H 0.092 0.908 20 C -0.254 4.254 21 N -0.582 5.582 22 Si 0.789 3.211 23 H -0.195 1.195 24 H -0.219 1.219 25 H -0.235 1.235 26 C -0.066 4.066 27 C -0.236 4.236 28 C -0.242 4.242 29 C -0.112 4.112 30 O -0.087 6.087 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.046 0.954 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.174 0.826 48 H 0.188 0.812 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 13.611 -8.125 -12.473 20.170 hybrid contribution -1.642 0.803 0.016 1.828 sum 11.969 -7.322 -12.456 18.762 Atomic orbital electron populations 1.21858 0.94567 1.01662 1.02308 1.19355 0.95952 0.97892 0.87284 0.88087 1.21697 1.03911 0.99767 0.90484 1.21093 0.78902 0.85521 0.85669 1.90612 1.42198 1.27551 1.87043 1.48498 1.53938 1.24169 1.05687 1.21321 0.93880 0.83064 1.04006 1.21941 0.99095 0.98875 0.98361 1.21432 0.91356 0.90263 0.94033 0.92682 1.22626 0.98227 0.95113 0.99475 1.21867 0.96547 0.96687 1.00389 1.20851 0.89531 0.90166 0.95059 0.93397 1.22713 0.99176 0.93390 0.83791 1.45573 1.00554 1.05959 1.80597 1.19166 0.81605 0.95050 1.38006 0.90786 1.25259 1.00688 0.95829 1.03579 1.69934 1.33409 0.99946 1.54942 0.85283 0.82210 0.77157 0.76402 1.19503 1.21895 1.23495 1.22305 1.02301 0.82935 0.99019 1.21894 1.03776 1.02066 0.95898 1.22140 1.06044 0.93113 1.02913 1.24813 0.97912 1.02302 0.86131 1.84014 1.59991 1.28171 1.36519 0.92871 0.91803 0.93055 0.88578 0.86415 0.88775 0.88480 0.95388 0.88303 0.92080 0.87771 0.91794 0.89586 0.94538 0.90828 0.95008 0.82642 0.81222 0.74761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 8.92 71.98 0.64 -4.20 16 2 C 0.01 0.40 2.44 -11.54 -0.03 0.37 16 3 H 0.10 2.98 7.91 -2.39 -0.02 2.96 16 4 C -0.12 -3.45 3.64 29.85 0.11 -3.34 16 5 C 0.50 19.75 7.41 87.66 0.65 20.40 16 6 O -0.59 -28.80 13.62 -3.02 -0.04 -28.84 16 7 N -0.59 -22.78 2.86 -821.23 -2.35 -25.13 16 8 C 0.10 2.82 4.98 86.21 0.43 3.25 16 9 C -0.14 -4.26 5.01 29.56 0.15 -4.11 16 10 C 0.14 4.83 4.02 44.61 0.18 5.01 16 11 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 12 C -0.12 -3.21 6.02 31.60 0.19 -3.02 16 13 C -0.12 -3.74 5.78 30.32 0.18 -3.57 16 14 C 0.15 6.66 2.00 43.41 0.09 6.75 16 15 H 0.05 2.59 6.21 -2.39 -0.01 2.57 16 16 C 0.13 6.10 5.76 85.55 0.49 6.59 16 17 N -0.60 -28.78 2.77 -644.86 -1.79 -30.57 16 18 C -0.21 -11.52 10.43 84.03 0.88 -10.65 16 19 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 21 N -0.93 -55.41 8.33 21.65 0.18 -55.23 16 22 Si 0.96 47.89 29.55 68.60 2.03 49.92 16 23 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 26 C -0.02 -0.40 5.83 24.83 0.14 -0.25 16 27 C -0.22 -4.77 10.78 22.19 0.24 -4.53 16 28 C -0.22 -3.98 10.91 22.19 0.24 -3.74 16 29 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 30 O -0.19 -4.66 10.65 -2.42 -0.03 -4.68 16 31 H 0.05 2.17 5.95 -2.39 -0.01 2.16 16 32 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 2.76 8.11 -2.39 -0.02 2.74 16 35 H 0.12 2.69 7.40 -2.39 -0.02 2.67 16 36 H 0.09 2.03 6.20 -2.38 -0.01 2.01 16 37 H 0.10 2.43 3.93 -2.39 -0.01 2.42 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.10 2.05 7.38 -2.39 -0.02 2.03 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.09 2.31 6.15 -2.39 -0.01 2.29 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 4.27 5.39 -2.39 -0.01 4.26 16 46 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 48 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 49 H 0.24 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -74.04 370.69 4.80 -69.24 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.95 Total: 23.30 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.85 Total: 1.99 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -3.96 Total: -110.93 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.07 Total: -33.52 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -74.04 4.80 -69.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045879110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.695 kcal (2) G-P(sol) polarization free energy of solvation -74.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds