Wall clock time and date at job start Tue Mar 31 2020 17:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47381 * 2 1 4 4 C 1.52994 * 109.47165 * 239.99435 * 2 1 3 5 5 C 1.53005 * 109.47231 * 175.00213 * 4 2 1 6 6 N 1.46494 * 109.47478 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00323 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00120 * 180.02562 * 7 6 5 10 10 O 1.42902 * 109.47038 * 179.97438 * 9 7 6 11 11 C 1.35895 * 116.99970 * 179.97438 * 10 9 7 12 12 C 1.38748 * 120.09186 * 0.02562 * 11 10 9 13 13 C 1.38006 * 119.87745 * 180.02562 * 12 11 10 14 14 C 1.38542 * 120.29202 * 359.97438 * 13 12 11 15 15 C 1.38266 * 119.93797 * 0.02562 * 14 13 12 16 16 C 1.38416 * 119.90274 * 0.02562 * 15 14 13 17 17 C 1.51383 * 109.75351 * 180.02562 * 15 14 13 18 18 C 1.54339 * 105.17324 * 342.80716 * 17 15 14 19 19 C 1.51698 * 130.24225 * 179.84274 * 14 13 12 20 20 N 1.46507 * 109.46688 * 119.99780 * 2 1 3 21 21 C 1.36935 * 119.99850 * 274.99587 * 20 2 1 22 22 H 1.08005 * 120.00352 * 0.02562 * 21 20 2 23 23 C 1.38812 * 119.99844 * 179.97438 * 21 20 2 24 24 N 1.31613 * 120.00205 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99807 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47361 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47101 * 120.00315 * 25 23 21 28 28 H 1.48507 * 109.47229 * 239.99881 * 25 23 21 29 29 H 1.09004 * 109.47478 * 300.00589 * 1 2 3 30 30 H 1.09001 * 109.46847 * 60.00246 * 1 2 3 31 31 H 1.09000 * 109.47381 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47219 * 55.00480 * 4 2 1 33 33 H 1.08999 * 109.47724 * 295.00023 * 4 2 1 34 34 H 1.08998 * 109.46801 * 60.00011 * 5 4 2 35 35 H 1.08997 * 109.47298 * 300.00236 * 5 4 2 36 36 H 0.97001 * 119.99808 * 0.02562 * 6 5 4 37 37 H 1.09006 * 109.47032 * 60.00060 * 9 7 6 38 38 H 1.08997 * 109.46963 * 300.00031 * 9 7 6 39 39 H 1.08007 * 120.06382 * 0.02562 * 12 11 10 40 40 H 1.08006 * 119.85283 * 180.02562 * 13 12 11 41 41 H 1.07995 * 119.91041 * 180.02562 * 16 15 14 42 42 H 1.09000 * 110.30267 * 223.87989 * 17 15 14 43 43 H 1.08997 * 110.38024 * 101.77648 * 17 15 14 44 44 H 1.09002 * 110.82153 * 144.59302 * 18 17 15 45 45 H 1.09002 * 110.82354 * 267.94058 * 18 17 15 46 46 H 1.09003 * 110.25235 * 78.27189 * 19 14 13 47 47 H 1.08997 * 110.49495 * 316.02724 * 19 14 13 48 48 H 0.96998 * 119.99884 * 95.00593 * 20 2 1 49 49 H 0.96999 * 120.00299 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3136 6 7 4.0532 -1.3046 -2.5093 7 6 5.3742 -1.3410 -2.7743 8 8 6.1586 -0.8019 -2.0227 9 6 5.8765 -2.0516 -4.0047 10 8 7.3007 -1.9509 -4.0648 11 6 7.9171 -2.5436 -5.1210 12 6 7.1673 -3.2083 -6.0807 13 6 7.7979 -3.8091 -7.1512 14 6 9.1768 -3.7511 -7.2724 15 6 9.9262 -3.0893 -6.3173 16 6 9.2966 -2.4867 -5.2419 17 6 11.3951 -3.1679 -6.6748 18 6 11.4995 -4.3125 -7.7048 19 6 10.0919 -4.3249 -8.3375 20 7 2.0182 -0.6906 1.1963 21 6 2.1490 -0.0074 2.3758 22 1 1.8918 1.0405 2.4244 23 6 2.6111 -0.6619 3.5094 24 7 2.9240 -1.9389 3.4504 25 14 2.7888 0.2700 5.1186 26 1 2.3753 1.6825 4.9210 27 1 1.9276 -0.3586 6.1523 28 1 4.2056 0.2269 5.5617 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6054 -0.2619 -2.1369 33 1 1.7516 -1.7716 -1.2055 34 1 3.9993 -1.0729 -0.4258 35 1 3.8532 0.4368 -1.3573 36 1 3.4259 -1.7362 -3.1103 37 1 5.4423 -1.5918 -4.8926 38 1 5.5877 -3.1017 -3.9612 39 1 6.0920 -3.2554 -5.9902 40 1 7.2137 -4.3260 -7.8982 41 1 9.8818 -1.9694 -4.4961 42 1 11.9878 -3.4000 -5.7900 43 1 11.7288 -2.2293 -7.1171 44 1 12.2594 -4.0911 -8.4543 45 1 11.7101 -5.2608 -7.2103 46 1 10.0727 -3.6981 -9.2290 47 1 9.7972 -5.3448 -8.5848 48 1 2.2489 -1.6317 1.1527 49 1 3.2473 -2.3962 4.2424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663008312.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:16 Heat of formation + Delta-G solvation = -49.499177 kcal Electronic energy + Delta-G solvation = -26912.962325 eV Core-core repulsion = 23032.932630 eV Total energy + Delta-G solvation = -3880.029695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81946 -39.71645 -38.47680 -36.58016 -35.07397 -34.40464 -32.30744 -31.79605 -30.05208 -28.89681 -28.63874 -27.88173 -26.79113 -23.87450 -23.18347 -22.64056 -21.23294 -21.15349 -20.54412 -19.67417 -18.13852 -17.42141 -17.09943 -16.57539 -16.07944 -15.96721 -15.73181 -15.21844 -15.17317 -14.70232 -14.55993 -13.92434 -13.73505 -13.64298 -13.49536 -13.24838 -13.14088 -12.69463 -12.61698 -12.49746 -12.27089 -12.05889 -11.87395 -11.62512 -11.56005 -11.55709 -11.10095 -10.97452 -10.92945 -10.81838 -10.75525 -10.63560 -10.28686 -9.98780 -9.70779 -9.62863 -9.08244 -8.95332 -8.86286 -8.28331 -6.94459 -5.74141 -3.02913 1.02595 1.14784 2.44606 2.61686 3.42474 3.46186 3.51845 3.54031 3.55389 4.14641 4.21376 4.46101 4.61529 4.61933 4.63124 4.71553 4.75573 4.81754 4.94423 4.99799 5.14773 5.26147 5.31615 5.33933 5.37383 5.43065 5.51674 5.55957 5.57660 5.66286 5.76323 5.85936 5.86077 5.99295 6.04539 6.08566 6.16022 6.31434 6.35824 6.37513 6.42407 6.44575 6.62143 6.68248 6.85427 7.05193 7.12556 7.52652 7.73685 8.25137 8.44130 9.55693 10.11926 10.46376 11.48544 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.001751 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.425483 B =15986.945835 C =16958.469266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.725 5.725 7 C 0.509 3.491 8 O -0.512 6.512 9 C 0.043 3.957 10 O -0.287 6.287 11 C 0.134 3.866 12 C -0.210 4.210 13 C -0.067 4.067 14 C -0.140 4.140 15 C -0.058 4.058 16 C -0.137 4.137 17 C -0.083 4.083 18 C -0.121 4.121 19 C -0.076 4.076 20 N -0.724 5.724 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 -5.371 -28.357 30.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.068 0.932 4 C -0.171 4.171 5 C 0.001 3.999 6 N -0.378 5.378 7 C 0.293 3.707 8 O -0.386 6.386 9 C -0.036 4.036 10 O -0.199 6.199 11 C 0.088 3.912 12 C -0.229 4.229 13 C -0.085 4.085 14 C -0.140 4.140 15 C -0.058 4.058 16 C -0.156 4.156 17 C -0.120 4.120 18 C -0.158 4.158 19 C -0.113 4.113 20 N -0.366 5.366 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.230 0.770 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.730 -4.719 -27.475 29.871 hybrid contribution -0.571 -0.194 0.599 0.850 sum 10.158 -4.914 -26.876 29.149 Atomic orbital electron populations 1.22422 0.99089 1.00827 0.99981 1.20157 0.91916 0.95615 0.85994 0.93238 1.22064 0.93684 1.01879 0.99437 1.21506 0.94494 0.97201 0.86715 1.45946 1.06373 1.57465 1.27999 1.19933 0.83016 0.81280 0.86500 1.90797 1.55014 1.44188 1.48597 1.22509 0.80916 1.01896 0.98319 1.86176 1.19541 1.71653 1.42534 1.18844 0.92173 0.93168 0.86999 1.21144 1.00097 1.04598 0.97077 1.20367 0.93162 0.97960 0.96986 1.20563 0.93499 1.01989 0.97979 1.20317 0.96101 0.95944 0.93468 1.19809 0.91346 1.04539 0.99896 1.21075 0.91882 0.99528 0.99517 1.22293 0.96716 0.98752 0.98084 1.21021 0.93055 1.00809 0.96456 1.42457 1.78097 1.10645 1.05362 1.19269 1.36470 0.93881 0.87302 0.91125 1.24732 1.02149 0.95968 0.98083 1.69658 1.50945 1.08672 1.28775 0.86146 0.77329 0.78796 0.84088 1.20574 1.21972 1.21871 0.92697 0.94582 0.93525 0.91858 0.91527 0.89512 0.91607 0.76954 0.89110 0.88967 0.85184 0.85942 0.85097 0.90372 0.89899 0.90528 0.90892 0.90518 0.90881 0.78300 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.15 0.35 -2.44 16 2 C 0.17 3.27 2.89 -67.93 -0.20 3.07 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.93 4.87 -26.73 -0.13 -2.06 16 5 C 0.12 1.99 5.56 -4.04 -0.02 1.97 16 6 N -0.72 -9.18 5.56 -60.30 -0.33 -9.52 16 7 C 0.51 7.52 7.91 -10.98 -0.09 7.43 16 8 O -0.51 -10.45 16.50 -14.36 -0.24 -10.69 16 9 C 0.04 0.45 5.22 36.01 0.19 0.64 16 10 O -0.29 -3.96 9.67 -39.32 -0.38 -4.34 16 11 C 0.13 1.58 6.68 -39.26 -0.26 1.32 16 12 C -0.21 -1.98 9.04 -39.48 -0.36 -2.33 16 13 C -0.07 -0.57 10.03 -39.55 -0.40 -0.97 16 14 C -0.14 -1.23 6.15 -104.01 -0.64 -1.87 16 15 C -0.06 -0.56 6.13 -104.21 -0.64 -1.20 16 16 C -0.14 -1.56 9.98 -39.38 -0.39 -1.95 16 17 C -0.08 -0.57 6.77 -26.85 -0.18 -0.75 16 18 C -0.12 -0.66 7.07 -25.33 -0.18 -0.84 16 19 C -0.08 -0.47 6.79 -26.70 -0.18 -0.65 16 20 N -0.72 -17.60 4.57 -53.43 -0.24 -17.85 16 21 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 25 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.40 3.41 8.47 -40.82 -0.35 3.06 16 37 H 0.09 0.68 7.66 -51.93 -0.40 0.28 16 38 H 0.09 0.75 7.66 -51.93 -0.40 0.35 16 39 H 0.13 0.91 6.31 -52.48 -0.33 0.57 16 40 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 49 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -35.19 403.94 -10.86 -46.05 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.08 Total: 8.00 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -3.37 Total: -7.84 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.15 Total: -55.00 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.62 Total: -15.03 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.19 -10.86 -46.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663008312.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.452 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds