Wall clock time and date at job start Tue Mar 31 2020 17:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46895 * 109.47213 * 2 1 4 4 C 1.47022 * 110.99827 * 46.37086 * 3 2 1 5 5 C 1.53104 * 109.25599 * 182.39177 * 4 3 2 6 6 O 1.43014 * 109.25562 * 303.14355 * 5 4 3 7 7 C 1.43021 * 113.73745 * 58.67685 * 6 5 4 8 8 H 1.08995 * 109.54235 * 61.27923 * 7 6 5 9 9 C 1.50695 * 109.50689 * 181.38898 * 7 6 5 10 10 O 1.21285 * 119.99900 * 38.47568 * 9 7 6 11 11 N 1.34779 * 120.00100 * 218.46188 * 9 7 6 12 12 C 1.46502 * 119.99584 * 4.21244 * 11 9 7 13 13 C 1.50704 * 109.47049 * 100.17100 * 12 11 9 14 14 H 1.07999 * 119.99836 * 118.16972 * 13 12 11 15 15 C 1.37875 * 119.99789 * 298.43908 * 13 12 11 16 16 N 1.31513 * 120.00121 * 9.44614 * 15 13 12 17 17 Si 1.86802 * 119.99871 * 189.44710 * 15 13 12 18 18 H 1.48495 * 109.46961 * 60.00059 * 17 15 13 19 19 H 1.48503 * 109.46785 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47127 * 299.99845 * 17 15 13 21 21 C 1.39920 * 119.99881 * 184.20178 * 11 9 7 22 22 C 1.38872 * 120.07414 * 314.75359 * 21 11 9 23 23 C 1.38113 * 119.93051 * 179.70097 * 22 21 11 24 24 C 1.38285 * 120.06792 * 0.57482 * 23 22 21 25 25 C 1.50700 * 119.92986 * 179.74726 * 24 23 22 26 26 C 1.38278 * 120.14233 * 359.71799 * 24 23 22 27 27 C 1.38116 * 120.06976 * 359.97438 * 26 24 23 28 28 C 1.47016 * 110.99933 * 169.99560 * 3 2 1 29 29 H 1.09004 * 109.47068 * 299.99986 * 1 2 3 30 30 H 1.09007 * 109.46970 * 59.99439 * 1 2 3 31 31 H 1.08995 * 109.47108 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46782 * 240.00469 * 2 1 3 33 33 H 1.08998 * 109.46807 * 120.00332 * 2 1 3 34 34 H 1.09001 * 109.50342 * 302.31998 * 4 3 2 35 35 H 1.08989 * 109.50942 * 62.45235 * 4 3 2 36 36 H 1.08998 * 109.50777 * 63.08193 * 5 4 3 37 37 H 1.08998 * 109.50051 * 183.16957 * 5 4 3 38 38 H 1.08991 * 109.47295 * 340.16361 * 12 11 9 39 39 H 1.09004 * 109.46295 * 220.16493 * 12 11 9 40 40 H 0.96998 * 120.00158 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.03407 * 359.97438 * 22 21 11 42 42 H 1.08001 * 119.96683 * 180.30113 * 23 22 21 43 43 H 1.09003 * 109.47071 * 269.97883 * 25 24 23 44 44 H 1.09001 * 109.46927 * 29.97686 * 25 24 23 45 45 H 1.08999 * 109.47451 * 149.97232 * 25 24 23 46 46 H 1.08002 * 119.96539 * 180.02562 * 26 24 23 47 47 H 1.08007 * 120.03417 * 180.02562 * 27 26 24 48 48 H 1.09005 * 109.50078 * 57.68206 * 28 3 2 49 49 H 1.08994 * 109.51420 * 297.54909 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3025 2.1973 0.9935 5 6 1.8010 3.6430 0.9185 6 8 3.2165 3.6648 1.1215 7 6 3.9466 2.8844 0.1710 8 1 3.7760 3.2773 -0.8312 9 6 5.4175 2.9468 0.4924 10 8 5.7869 2.9348 1.6476 11 7 6.3227 3.0156 -0.5039 12 6 5.8745 3.1229 -1.8945 13 6 5.9688 4.5585 -2.3433 14 1 6.6212 4.8268 -3.1611 15 6 5.2263 5.5300 -1.7064 16 7 4.5820 5.2431 -0.5963 17 14 5.1355 7.2539 -2.4201 18 1 4.5532 7.1945 -3.7848 19 1 4.2806 8.1042 -1.5531 20 1 6.5009 7.8336 -2.4893 21 6 7.6903 2.9849 -0.2099 22 6 8.1972 3.7599 0.8249 23 6 9.5467 3.7226 1.1166 24 6 10.3947 2.9236 0.3717 25 6 11.8675 2.8895 0.6890 26 6 9.8940 2.1552 -0.6632 27 6 8.5445 2.1833 -0.9558 28 6 3.4697 1.4311 0.2384 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 0.2334 2.1697 0.7828 35 1 1.4878 1.7997 1.9912 36 1 1.5674 4.0582 -0.0618 37 1 1.3127 4.2368 1.6911 38 1 4.8408 2.7856 -1.9701 39 1 6.5068 2.5016 -2.5288 40 1 4.0600 5.9268 -0.1480 41 1 7.5363 4.3879 1.4039 42 1 9.9408 4.3214 1.9243 43 1 12.3813 3.6584 0.1119 44 1 12.0143 3.0749 1.7530 45 1 12.2722 1.9107 0.4316 46 1 10.5588 1.5319 -1.2428 47 1 8.1539 1.5826 -1.7640 48 1 3.9826 0.8441 -0.5235 49 1 3.6898 1.0211 1.2241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073108094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:21 Heat of formation + Delta-G solvation = -28.376360 kcal Electronic energy + Delta-G solvation = -30442.320377 eV Core-core repulsion = 26563.206635 eV Total energy + Delta-G solvation = -3879.113741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.91778 -38.91969 -37.51990 -35.59092 -34.95924 -32.75332 -31.47471 -30.75726 -30.31707 -30.27279 -27.58449 -26.95700 -25.41422 -23.75706 -23.18531 -22.43960 -21.74972 -20.77823 -19.87069 -18.56496 -17.01782 -16.53330 -15.95474 -15.62189 -15.37807 -15.03108 -14.89176 -14.72838 -14.51600 -14.44771 -13.87003 -13.74108 -13.42892 -13.28636 -13.06462 -12.94713 -12.74014 -12.35399 -12.20773 -11.99626 -11.91826 -11.86178 -11.63397 -11.40683 -11.31869 -11.06323 -10.90998 -10.85054 -10.79915 -10.65881 -10.46818 -10.10175 -9.95336 -9.81787 -8.85532 -8.76071 -8.48279 -8.45012 -8.21112 -8.08655 -6.94644 -6.14298 -4.34458 1.99704 2.11049 3.22881 3.30318 3.32028 3.56730 3.87873 4.22629 4.29684 4.54385 4.82885 5.02373 5.13110 5.14901 5.34851 5.35901 5.37060 5.39876 5.46900 5.59759 5.61797 5.67153 5.74291 5.79325 5.81124 5.87044 5.93596 6.00457 6.01377 6.07060 6.08526 6.13227 6.27398 6.32967 6.35761 6.39062 6.56514 6.71164 6.76877 6.98925 7.04613 7.19252 7.20640 7.21318 7.30161 7.45732 7.71994 7.91301 7.98294 8.10152 8.59818 8.71702 9.33323 9.42863 10.80699 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.004711 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.340186 B = 5941.705474 C = 7477.700430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 N -0.531 5.531 4 C 0.013 3.987 5 C 0.068 3.932 6 O -0.341 6.341 7 C 0.114 3.886 8 H 0.122 0.878 9 C 0.566 3.434 10 O -0.560 6.560 11 N -0.540 5.540 12 C 0.220 3.780 13 C -0.547 4.547 14 H 0.062 0.938 15 C 0.078 3.922 16 N -0.859 5.859 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.191 3.809 22 C -0.108 4.108 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.103 4.103 26 C -0.109 4.109 27 C -0.145 4.145 28 C 0.020 3.980 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.033 0.967 40 H 0.275 0.725 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.114 0.886 47 H 0.118 0.882 48 H 0.080 0.920 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -7.870 0.585 8.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.078 4.078 3 N -0.256 5.256 4 C -0.115 4.115 5 C -0.010 4.010 6 O -0.258 6.258 7 C 0.053 3.947 8 H 0.139 0.861 9 C 0.356 3.644 10 O -0.439 6.439 11 N -0.264 5.264 12 C 0.103 3.897 13 C -0.585 4.585 14 H 0.081 0.919 15 C -0.129 4.129 16 N -0.494 5.494 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.203 1.203 21 C 0.096 3.904 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.160 4.160 26 C -0.128 4.128 27 C -0.166 4.166 28 C -0.109 4.109 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.132 0.868 47 H 0.136 0.864 48 H 0.099 0.901 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.760 -7.498 0.986 7.765 hybrid contribution -0.172 0.678 0.215 0.732 sum -1.933 -6.820 1.200 7.190 Atomic orbital electron populations 1.21919 0.95160 1.01583 1.02496 1.22107 0.95565 0.89447 1.00712 1.62265 1.03886 1.10485 1.48981 1.22938 0.99107 0.95801 0.93657 1.22507 0.83174 0.93768 1.01589 1.88043 1.15617 1.69715 1.52463 1.21938 0.88699 0.87173 0.96903 0.86054 1.19686 0.87116 0.73507 0.84097 1.90556 1.81461 1.51026 1.20839 1.46434 1.01920 1.68255 1.09839 1.19717 0.95776 0.96925 0.77315 1.21343 1.26749 0.92716 1.17666 0.91943 1.25076 0.94565 0.99140 0.94127 1.69738 1.30138 1.34901 1.14646 0.86606 0.78195 0.83849 0.79087 1.20051 1.21143 1.20292 1.17717 0.84567 0.93315 0.94772 1.21200 0.94741 0.98119 0.98767 1.20800 0.93089 0.99337 0.99610 1.19668 0.95458 0.99815 0.97751 1.20653 0.92551 1.01535 1.01252 1.20635 0.94559 0.99973 0.97615 1.20899 0.93526 1.00204 1.01954 1.22893 0.88156 0.99493 1.00345 0.92457 0.91689 0.92403 0.90634 0.95159 0.89767 0.94537 0.92506 0.89431 0.93197 0.94865 0.91456 0.85591 0.86902 0.92024 0.92278 0.92305 0.86794 0.86364 0.90134 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.18 37.16 0.34 -1.25 16 2 C 0.05 0.63 6.00 -3.82 -0.02 0.61 16 3 N -0.53 -8.47 4.88 -234.30 -1.14 -9.61 16 4 C 0.01 0.20 4.94 -3.70 -0.02 0.18 16 5 C 0.07 1.17 7.01 37.21 0.26 1.43 16 6 O -0.34 -7.62 9.41 -51.29 -0.48 -8.10 16 7 C 0.11 2.50 1.31 -27.83 -0.04 2.46 16 8 H 0.12 2.86 4.44 -51.93 -0.23 2.63 16 9 C 0.57 13.84 5.14 -10.99 -0.06 13.79 16 10 O -0.56 -15.13 15.02 -10.50 -0.16 -15.28 16 11 N -0.54 -12.63 2.44 -114.74 -0.28 -12.91 16 12 C 0.22 5.00 5.43 -5.19 -0.03 4.97 16 13 C -0.55 -13.74 9.34 -34.44 -0.32 -14.06 16 14 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 15 C 0.08 1.97 5.42 -17.82 -0.10 1.87 16 16 N -0.86 -22.09 7.38 55.43 0.41 -21.68 16 17 Si 0.90 20.27 29.55 -169.99 -5.02 15.24 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.19 4.28 5.55 -83.70 -0.46 3.82 16 22 C -0.11 -2.43 8.68 -39.39 -0.34 -2.77 16 23 C -0.11 -2.06 9.69 -39.61 -0.38 -2.44 16 24 C -0.13 -2.11 5.88 -104.59 -0.62 -2.73 16 25 C -0.10 -1.30 10.01 36.01 0.36 -0.94 16 26 C -0.11 -1.84 9.69 -39.61 -0.38 -2.22 16 27 C -0.15 -2.79 9.37 -39.39 -0.37 -3.16 16 28 C 0.02 0.37 4.89 -3.71 -0.02 0.35 16 29 H 0.06 0.58 6.28 -51.93 -0.33 0.25 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.08 1.05 6.05 -51.93 -0.31 0.74 16 35 H 0.04 0.56 8.14 -51.94 -0.42 0.14 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.05 1.12 5.60 -51.93 -0.29 0.83 16 39 H 0.03 0.69 6.74 -51.93 -0.35 0.33 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.13 3.15 7.02 -52.49 -0.37 2.78 16 42 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.12 2.07 7.05 -52.48 -0.37 1.70 16 48 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -29.45 380.48 -10.84 -40.29 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.71 Total: 6.40 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.19 Total: -0.09 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -1.01 Total: -44.20 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.64 Total: -23.38 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.45 -10.84 -40.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073108094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.918 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds