Wall clock time and date at job start Tue Mar 31 2020 17:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46895 * 109.47213 * 2 1 4 4 C 1.47022 * 110.99827 * 46.37086 * 3 2 1 5 5 C 1.53104 * 109.25599 * 182.39177 * 4 3 2 6 6 O 1.43014 * 109.25562 * 303.14355 * 5 4 3 7 7 C 1.43021 * 113.73745 * 58.67685 * 6 5 4 8 8 H 1.08995 * 109.54235 * 61.27923 * 7 6 5 9 9 C 1.50695 * 109.50689 * 181.38898 * 7 6 5 10 10 O 1.21285 * 119.99900 * 38.47568 * 9 7 6 11 11 N 1.34779 * 120.00100 * 218.46188 * 9 7 6 12 12 C 1.46502 * 119.99584 * 4.21244 * 11 9 7 13 13 C 1.50704 * 109.47049 * 100.17100 * 12 11 9 14 14 H 1.07999 * 119.99836 * 118.16972 * 13 12 11 15 15 C 1.37875 * 119.99789 * 298.43908 * 13 12 11 16 16 N 1.31513 * 120.00121 * 9.44614 * 15 13 12 17 17 Si 1.86802 * 119.99871 * 189.44710 * 15 13 12 18 18 H 1.48495 * 109.46961 * 60.00059 * 17 15 13 19 19 H 1.48503 * 109.46785 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47127 * 299.99845 * 17 15 13 21 21 C 1.39920 * 119.99881 * 184.20178 * 11 9 7 22 22 C 1.38872 * 120.07414 * 314.75359 * 21 11 9 23 23 C 1.38113 * 119.93051 * 179.70097 * 22 21 11 24 24 C 1.38285 * 120.06792 * 0.57482 * 23 22 21 25 25 C 1.50700 * 119.92986 * 179.74726 * 24 23 22 26 26 C 1.38278 * 120.14233 * 359.71799 * 24 23 22 27 27 C 1.38116 * 120.06976 * 359.97438 * 26 24 23 28 28 C 1.47016 * 110.99933 * 169.99560 * 3 2 1 29 29 H 1.09004 * 109.47068 * 299.99986 * 1 2 3 30 30 H 1.09007 * 109.46970 * 59.99439 * 1 2 3 31 31 H 1.08995 * 109.47108 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46782 * 240.00469 * 2 1 3 33 33 H 1.08998 * 109.46807 * 120.00332 * 2 1 3 34 34 H 1.09001 * 109.50342 * 302.31998 * 4 3 2 35 35 H 1.08989 * 109.50942 * 62.45235 * 4 3 2 36 36 H 1.08998 * 109.50777 * 63.08193 * 5 4 3 37 37 H 1.08998 * 109.50051 * 183.16957 * 5 4 3 38 38 H 1.08991 * 109.47295 * 340.16361 * 12 11 9 39 39 H 1.09004 * 109.46295 * 220.16493 * 12 11 9 40 40 H 0.96998 * 120.00158 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.03407 * 359.97438 * 22 21 11 42 42 H 1.08001 * 119.96683 * 180.30113 * 23 22 21 43 43 H 1.09003 * 109.47071 * 269.97883 * 25 24 23 44 44 H 1.09001 * 109.46927 * 29.97686 * 25 24 23 45 45 H 1.08999 * 109.47451 * 149.97232 * 25 24 23 46 46 H 1.08002 * 119.96539 * 180.02562 * 26 24 23 47 47 H 1.08007 * 120.03417 * 180.02562 * 27 26 24 48 48 H 1.09005 * 109.50078 * 57.68206 * 28 3 2 49 49 H 1.08994 * 109.51420 * 297.54909 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3025 2.1973 0.9935 5 6 1.8010 3.6430 0.9185 6 8 3.2165 3.6648 1.1215 7 6 3.9466 2.8844 0.1710 8 1 3.7760 3.2773 -0.8312 9 6 5.4175 2.9468 0.4924 10 8 5.7869 2.9348 1.6476 11 7 6.3227 3.0156 -0.5039 12 6 5.8745 3.1229 -1.8945 13 6 5.9688 4.5585 -2.3433 14 1 6.6212 4.8268 -3.1611 15 6 5.2263 5.5300 -1.7064 16 7 4.5820 5.2431 -0.5963 17 14 5.1355 7.2539 -2.4201 18 1 4.5532 7.1945 -3.7848 19 1 4.2806 8.1042 -1.5531 20 1 6.5009 7.8336 -2.4893 21 6 7.6903 2.9849 -0.2099 22 6 8.1972 3.7599 0.8249 23 6 9.5467 3.7226 1.1166 24 6 10.3947 2.9236 0.3717 25 6 11.8675 2.8895 0.6890 26 6 9.8940 2.1552 -0.6632 27 6 8.5445 2.1833 -0.9558 28 6 3.4697 1.4311 0.2384 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 0.2334 2.1697 0.7828 35 1 1.4878 1.7997 1.9912 36 1 1.5674 4.0582 -0.0618 37 1 1.3127 4.2368 1.6911 38 1 4.8408 2.7856 -1.9701 39 1 6.5068 2.5016 -2.5288 40 1 4.0600 5.9268 -0.1480 41 1 7.5363 4.3879 1.4039 42 1 9.9408 4.3214 1.9243 43 1 12.3813 3.6584 0.1119 44 1 12.0143 3.0749 1.7530 45 1 12.2722 1.9107 0.4316 46 1 10.5588 1.5319 -1.2428 47 1 8.1539 1.5826 -1.7640 48 1 3.9826 0.8441 -0.5235 49 1 3.6898 1.0211 1.2241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073108094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:18 Heat of formation + Delta-G solvation = -45.098696 kcal Electronic energy + Delta-G solvation = -30443.045512 eV Core-core repulsion = 26563.206635 eV Total energy + Delta-G solvation = -3879.838876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.58614 -40.36908 -39.08781 -37.00176 -36.79057 -34.52219 -33.02853 -32.09728 -31.77696 -31.53889 -29.40882 -28.33762 -26.75795 -25.19941 -24.99667 -23.70707 -23.30441 -22.17494 -21.21347 -20.24645 -18.86190 -18.20260 -17.48066 -17.18736 -16.97857 -16.75103 -16.26312 -16.14399 -16.03412 -15.91550 -15.44757 -15.15049 -14.86260 -14.57215 -14.42975 -14.32659 -14.26734 -14.08333 -13.79239 -13.63065 -13.11694 -13.02492 -12.87809 -12.78069 -12.73812 -12.65173 -12.47179 -12.34705 -12.23762 -11.97239 -11.82754 -11.78334 -11.67849 -11.56267 -10.69900 -10.43652 -10.26048 -10.09359 -9.74284 -9.40057 -8.64033 -8.05761 -6.33625 0.48015 0.59337 1.39569 1.42718 1.48725 1.82064 2.31759 2.39794 2.82390 3.01433 3.14891 3.34802 3.87063 3.97199 3.99477 4.03647 4.13132 4.20007 4.20391 4.21006 4.33713 4.38240 4.52515 4.55754 4.57679 4.61093 4.63109 4.66560 4.78370 4.85362 4.88585 4.94663 4.94883 4.99439 5.04720 5.10760 5.21653 5.23834 5.27644 5.31126 5.51427 5.67380 5.70193 5.77735 5.88475 5.95343 6.03338 6.07705 6.31504 6.48105 6.69208 6.85769 7.37272 7.58512 8.82281 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.004711 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.340186 B = 5941.705474 C = 7477.700430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 N -0.538 5.538 4 C 0.020 3.980 5 C 0.060 3.940 6 O -0.376 6.376 7 C 0.125 3.875 8 H 0.103 0.897 9 C 0.556 3.444 10 O -0.600 6.600 11 N -0.538 5.538 12 C 0.222 3.778 13 C -0.562 4.562 14 H 0.058 0.942 15 C 0.039 3.961 16 N -0.868 5.868 17 Si 0.947 3.053 18 H -0.263 1.263 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.149 3.851 22 C -0.138 4.138 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.101 4.101 26 C -0.102 4.102 27 C -0.148 4.148 28 C 0.032 3.968 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.029 0.971 34 H 0.117 0.883 35 H 0.033 0.967 36 H 0.048 0.952 37 H 0.108 0.892 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.266 0.734 41 H 0.082 0.918 42 H 0.131 0.869 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.157 0.843 47 H 0.134 0.866 48 H 0.088 0.912 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -9.343 -0.535 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 N -0.263 5.263 4 C -0.108 4.108 5 C -0.017 4.017 6 O -0.294 6.294 7 C 0.064 3.936 8 H 0.121 0.879 9 C 0.346 3.654 10 O -0.482 6.482 11 N -0.263 5.263 12 C 0.105 3.895 13 C -0.600 4.600 14 H 0.076 0.924 15 C -0.167 4.167 16 N -0.503 5.503 17 Si 0.774 3.226 18 H -0.188 1.188 19 H -0.215 1.215 20 H -0.211 1.211 21 C 0.055 3.945 22 C -0.159 4.159 23 C -0.135 4.135 24 C -0.116 4.116 25 C -0.157 4.157 26 C -0.120 4.120 27 C -0.168 4.168 28 C -0.097 4.097 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.135 0.865 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.149 0.851 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.175 0.825 47 H 0.152 0.848 48 H 0.106 0.894 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.890 -8.985 -0.168 9.031 hybrid contribution -0.332 1.125 0.576 1.307 sum -1.223 -7.860 0.408 7.965 Atomic orbital electron populations 1.21885 0.92854 1.03134 1.02628 1.22251 0.97436 0.87393 1.01029 1.62297 1.02175 1.12688 1.49166 1.22926 1.00597 0.93886 0.93377 1.22765 0.81022 0.95991 1.01888 1.87983 1.18193 1.70374 1.52818 1.21678 0.87374 0.89020 0.95551 0.87922 1.20252 0.88414 0.72904 0.83794 1.90506 1.82251 1.53181 1.22268 1.46337 1.02595 1.67720 1.09607 1.19691 0.96199 0.96213 0.77401 1.21554 1.26738 0.94038 1.17667 0.92414 1.25665 0.94644 1.01898 0.94446 1.69915 1.30324 1.35001 1.15085 0.85798 0.77470 0.80496 0.78865 1.18813 1.21548 1.21081 1.18096 0.84572 0.95433 0.96369 1.21049 0.96025 0.99205 0.99611 1.21055 0.91819 1.00078 1.00545 1.20202 0.97585 0.97576 0.96276 1.20738 0.89116 1.03521 1.02336 1.21148 0.93960 0.99516 0.97374 1.21162 0.94359 0.99605 1.01679 1.22670 0.90310 0.97073 0.99680 0.92075 0.91696 0.90234 0.89925 0.95245 0.86468 0.94871 0.93367 0.87365 0.93323 0.92879 0.92414 0.89948 0.85121 0.90487 0.91216 0.89874 0.82520 0.84814 0.89402 0.95919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 71.98 0.66 -1.99 16 2 C 0.05 1.10 6.00 86.31 0.52 1.62 16 3 N -0.54 -16.90 4.88 -895.19 -4.37 -21.26 16 4 C 0.02 0.58 4.94 86.31 0.43 1.01 16 5 C 0.06 2.13 7.01 72.02 0.50 2.63 16 6 O -0.38 -17.58 9.41 -133.63 -1.26 -18.84 16 7 C 0.12 5.73 1.31 29.88 0.04 5.77 16 8 H 0.10 5.07 4.44 -2.39 -0.01 5.06 16 9 C 0.56 28.77 5.14 87.66 0.45 29.22 16 10 O -0.60 -34.76 15.02 12.31 0.18 -34.57 16 11 N -0.54 -26.32 2.44 -635.31 -1.55 -27.87 16 12 C 0.22 10.37 5.43 85.63 0.46 10.84 16 13 C -0.56 -28.88 9.34 25.60 0.24 -28.64 16 14 H 0.06 2.95 7.83 -2.91 -0.02 2.93 16 15 C 0.04 2.00 5.42 84.65 0.46 2.46 16 16 N -0.87 -46.69 7.38 21.45 0.16 -46.53 16 17 Si 0.95 42.55 29.55 68.60 2.03 44.57 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 C 0.15 6.89 5.55 38.15 0.21 7.10 16 22 C -0.14 -6.56 8.68 22.39 0.19 -6.36 16 23 C -0.12 -4.37 9.69 22.25 0.22 -4.15 16 24 C -0.12 -3.57 5.88 -19.84 -0.12 -3.69 16 25 C -0.10 -2.10 10.01 71.24 0.71 -1.39 16 26 C -0.10 -3.12 9.69 22.25 0.22 -2.90 16 27 C -0.15 -5.55 9.37 22.39 0.21 -5.34 16 28 C 0.03 1.22 4.89 86.31 0.42 1.64 16 29 H 0.06 1.05 6.28 -2.39 -0.01 1.04 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.03 0.72 8.08 -2.39 -0.02 0.70 16 34 H 0.12 2.66 6.05 -2.39 -0.01 2.64 16 35 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.05 2.26 5.60 -2.39 -0.01 2.25 16 39 H 0.05 2.20 6.74 -2.39 -0.02 2.18 16 40 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.08 4.53 7.02 -2.91 -0.02 4.51 16 42 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 45 H 0.08 1.38 8.08 -2.39 -0.02 1.37 16 46 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 47 H 0.13 4.47 7.05 -2.91 -0.02 4.45 16 48 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 49 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -68.60 380.48 1.96 -66.64 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.94 Total: 30.04 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.83 Total: 7.84 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -5.76 Total: -95.67 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -1.07 Total: -53.41 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -68.60 1.96 -66.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073108094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.539 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds