Wall clock time and date at job start Tue Mar 31 2020 18:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46907 * 109.46707 * 2 1 4 4 C 1.46895 * 111.00229 * 63.53337 * 3 2 1 5 5 C 1.52994 * 109.47048 * 75.73826 * 4 3 2 6 6 H 1.08999 * 109.47680 * 303.25298 * 5 4 3 7 7 C 1.53009 * 109.47071 * 183.25585 * 5 4 3 8 8 C 1.47200 * 109.47390 * 63.26154 * 5 4 3 9 9 N 4.55564 * 139.17433 * 40.31270 * 2 1 3 10 10 C 1.46905 * 110.99844 * 299.57388 * 3 2 1 11 11 C 1.52991 * 109.47431 * 288.59990 * 10 3 2 12 12 H 1.09007 * 109.47284 * 57.13371 * 11 10 3 13 13 O 1.42896 * 109.47421 * 297.12991 * 11 10 3 14 14 C 1.52997 * 109.47291 * 177.12816 * 11 10 3 15 15 O 1.42902 * 109.47690 * 184.99712 * 14 11 10 16 16 C 1.35675 * 117.00572 * 179.97438 * 15 14 11 17 17 C 1.39310 * 119.81229 * 359.73102 * 16 15 14 18 18 C 1.36443 * 120.18135 * 179.75900 * 17 16 15 19 19 C 1.40832 * 119.80976 * 0.51064 * 18 17 16 20 20 C 1.41216 * 120.17782 * 179.71928 * 19 18 17 21 21 H 1.08001 * 119.99678 * 26.52197 * 20 19 18 22 22 C 1.39892 * 120.00054 * 206.52566 * 20 19 18 23 23 N 1.30877 * 120.00065 * 15.17145 * 22 20 19 24 24 Si 1.86795 * 120.00011 * 195.17384 * 22 20 19 25 25 H 1.48509 * 109.47254 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47389 * 119.99824 * 24 22 20 27 27 H 1.48502 * 109.47072 * 239.99987 * 24 22 20 28 28 C 1.40830 * 119.64197 * 359.74699 * 19 18 17 29 29 C 1.36434 * 119.81375 * 359.97438 * 28 19 18 30 30 H 1.08998 * 109.46857 * 180.94367 * 1 2 3 31 31 H 1.09003 * 109.47134 * 300.94019 * 1 2 3 32 32 H 1.09002 * 109.47275 * 60.94483 * 1 2 3 33 33 H 1.08999 * 109.47144 * 240.00053 * 2 1 3 34 34 H 1.08997 * 109.47337 * 119.99630 * 2 1 3 35 35 H 1.09001 * 109.47392 * 315.73776 * 4 3 2 36 36 H 1.08995 * 109.47037 * 195.74026 * 4 3 2 37 37 H 1.08998 * 109.46916 * 175.58024 * 7 5 4 38 38 H 1.08999 * 109.46962 * 55.57566 * 7 5 4 39 39 H 1.08997 * 109.46853 * 295.57814 * 7 5 4 40 40 H 1.09005 * 109.46617 * 48.60280 * 10 3 2 41 41 H 1.08995 * 109.46735 * 168.59782 * 10 3 2 42 42 H 0.96694 * 114.00329 * 300.00149 * 13 11 10 43 43 H 1.08999 * 109.47421 * 305.00440 * 14 11 10 44 44 H 1.09009 * 109.46821 * 65.00173 * 14 11 10 45 45 H 1.08002 * 119.91405 * 0.02562 * 17 16 15 46 46 H 1.07997 * 120.09180 * 180.25647 * 18 17 16 47 47 H 0.96989 * 120.00277 * 179.97438 * 23 22 20 48 48 H 1.07998 * 120.09169 * 179.97438 * 28 19 18 49 49 H 1.07997 * 119.90928 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6188 2.0852 1.2276 5 6 2.4956 1.6173 2.3909 6 1 2.4178 0.5348 2.4921 7 6 2.0255 2.2854 3.6847 8 6 3.8963 1.9863 2.1291 9 7 4.9773 2.2710 1.9268 10 6 1.5569 2.1070 -1.1928 11 6 2.2973 1.5836 -2.4250 12 1 2.1382 0.5090 -2.5153 13 8 3.6949 1.8485 -2.2892 14 6 1.7646 2.2847 -3.6762 15 8 2.3722 1.7144 -4.8371 16 6 2.0055 2.2263 -6.0389 17 6 1.0709 3.2578 -6.0962 18 6 0.7004 3.7816 -7.3004 19 6 1.2576 3.2692 -8.4880 20 6 0.8753 3.8015 -9.7389 21 1 0.5235 4.8204 -9.8074 22 6 0.9521 3.0092 -10.8892 23 7 1.0867 1.7117 -10.7823 24 14 0.8626 3.8029 -12.5777 25 1 0.7108 5.2725 -12.4265 26 1 2.1087 3.5084 -13.3299 27 1 -0.3034 3.2591 -13.3192 28 6 2.1978 2.2228 -8.4214 29 6 2.5618 1.7141 -7.2089 30 1 -0.3633 -1.0275 0.0169 31 1 -0.3633 0.5284 0.8815 32 1 -0.3634 0.4991 -0.8983 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5745 1.8637 1.4478 36 1 1.7411 3.1594 1.0897 37 1 2.5984 1.8932 4.5250 38 1 0.9667 2.0765 3.8375 39 1 2.1767 3.3624 3.6130 40 1 0.4855 1.9508 -1.3191 41 1 1.7572 3.1717 -1.0735 42 1 3.9109 2.7871 -2.2039 43 1 0.6836 2.1569 -3.7319 44 1 2.0028 3.3473 -3.6264 45 1 0.6415 3.6469 -5.1848 46 1 -0.0212 4.5840 -7.3429 47 1 1.1395 1.1623 -11.5798 48 1 2.6294 1.8242 -9.3276 49 1 3.2823 0.9113 -7.1560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157680252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:45 Heat of formation + Delta-G solvation = -41.384859 kcal Electronic energy + Delta-G solvation = -27706.179838 eV Core-core repulsion = 23826.502006 eV Total energy + Delta-G solvation = -3879.677832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.67582 -38.78013 -37.36460 -36.48647 -35.79473 -33.89330 -33.29553 -31.13740 -30.16488 -29.51557 -28.95616 -26.82894 -25.31230 -24.63535 -24.05398 -22.32506 -20.83826 -20.57418 -20.35351 -17.89497 -17.35868 -17.12166 -16.73131 -16.39718 -16.00938 -15.58193 -15.22079 -14.87450 -14.66153 -14.42432 -14.03680 -13.92448 -13.67077 -13.52171 -13.22876 -13.08649 -12.90521 -12.78684 -12.44725 -12.29243 -12.17442 -12.10889 -12.05233 -11.94025 -11.74388 -11.68977 -11.37454 -11.35290 -11.16005 -10.97582 -10.88820 -10.72483 -10.61554 -9.98560 -9.88235 -9.80459 -9.32647 -9.04817 -8.59542 -7.64702 -7.00525 -6.69988 -4.26245 2.68840 2.72218 2.77220 2.94518 3.09348 3.14462 3.20022 3.27516 3.68715 3.96072 4.05300 4.33744 4.45655 4.61156 4.64080 4.65334 4.73587 4.79148 4.89256 4.95011 5.03740 5.06998 5.14422 5.17117 5.22128 5.25621 5.36766 5.43924 5.55763 5.59936 5.60777 5.66529 5.69886 5.90836 6.02750 6.05016 6.22406 6.62173 6.68192 6.73474 6.97432 7.11224 7.19170 7.46309 7.51387 7.55992 7.77922 7.79591 8.01187 8.20779 8.45458 8.65809 8.90782 8.98706 10.24866 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.029286 B = 0.001874 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.869704 B =14936.936412 C =15129.769804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.043 3.957 3 N -0.527 5.527 4 C 0.053 3.947 5 C 0.011 3.989 6 H 0.111 0.889 7 C -0.146 4.146 8 C 0.219 3.781 9 N -0.434 5.434 10 C 0.022 3.978 11 C 0.117 3.883 12 H 0.104 0.896 13 O -0.538 6.538 14 C 0.038 3.962 15 O -0.317 6.317 16 C -0.006 4.006 17 C -0.170 4.170 18 C -0.196 4.196 19 C 0.087 3.913 20 C -0.464 4.464 21 H 0.076 0.924 22 C 0.073 3.927 23 N -0.803 5.803 24 Si 0.908 3.092 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.276 1.276 28 C -0.129 4.129 29 C -0.121 4.121 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.369 0.631 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.279 0.721 48 H 0.126 0.874 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 -1.600 24.391 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.085 4.085 3 N -0.250 5.250 4 C -0.076 4.076 5 C -0.011 4.011 6 H 0.129 0.871 7 C -0.205 4.205 8 C -0.099 4.099 9 N -0.109 5.109 10 C -0.106 4.106 11 C 0.057 3.943 12 H 0.122 0.878 13 O -0.342 6.342 14 C -0.039 4.039 15 O -0.232 6.232 16 C -0.049 4.049 17 C -0.189 4.189 18 C -0.216 4.216 19 C 0.084 3.916 20 C -0.494 4.494 21 H 0.094 0.906 22 C -0.143 4.143 23 N -0.429 5.429 24 Si 0.733 3.267 25 H -0.185 1.185 26 H -0.198 1.198 27 H -0.201 1.201 28 C -0.149 4.149 29 C -0.140 4.140 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.215 0.785 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.144 0.856 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.562 -2.195 23.903 24.055 hybrid contribution -1.810 0.932 -0.737 2.165 sum -3.373 -1.263 23.167 23.445 Atomic orbital electron populations 1.22469 0.98073 1.02873 1.02184 1.22283 0.92851 0.89842 1.03522 1.62049 1.59609 1.02305 1.01024 1.22276 0.97136 0.99271 0.88961 1.18868 0.83478 1.02544 0.96240 0.87132 1.21797 1.02284 1.01378 0.94997 1.28761 0.94512 0.93657 0.92996 1.81211 1.12702 1.08637 1.08345 1.22813 0.98497 0.98594 0.90703 1.21829 0.81938 1.00867 0.89636 0.87842 1.86653 1.22021 1.29779 1.95708 1.23121 0.97342 0.97264 0.86202 1.85894 1.65441 1.59864 1.12024 1.18638 1.02786 0.99673 0.83784 1.20390 1.01287 0.99694 0.97525 1.20578 1.04112 1.04608 0.92306 1.17610 0.89960 0.91605 0.92376 1.19480 1.39242 0.99380 0.91288 0.90579 1.25870 0.92598 0.94453 1.01375 1.69820 1.36774 1.04876 1.31473 0.86270 0.78505 0.80559 0.81399 1.18539 1.19775 1.20105 1.21000 0.98631 0.99755 0.95498 1.19857 1.02088 1.01422 0.90585 0.91665 0.92270 0.92018 0.89924 0.90428 0.91811 0.90069 0.91398 0.90563 0.91657 0.92576 0.90273 0.78497 0.92639 0.93004 0.88985 0.88763 0.91020 0.85607 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 9.30 37.16 0.35 -0.80 16 2 C 0.04 0.30 5.80 -3.82 -0.02 0.28 16 3 N -0.53 -4.16 4.17 -234.63 -0.98 -5.13 16 4 C 0.05 0.28 4.26 -3.83 -0.02 0.26 16 5 C 0.01 0.05 2.82 -93.41 -0.26 -0.21 16 6 H 0.11 0.41 6.78 -51.93 -0.35 0.06 16 7 C -0.15 -0.41 9.15 37.16 0.34 -0.07 16 8 C 0.22 2.08 14.31 -20.76 -0.30 1.79 16 9 N -0.43 -5.73 18.54 42.15 0.78 -4.95 16 10 C 0.02 0.19 4.45 -3.83 -0.02 0.17 16 11 C 0.12 1.46 3.26 -26.74 -0.09 1.37 16 12 H 0.10 1.37 6.63 -51.92 -0.34 1.02 16 13 O -0.54 -7.78 13.22 -40.09 -0.53 -8.31 16 14 C 0.04 0.57 4.36 37.16 0.16 0.74 16 15 O -0.32 -6.54 10.09 -23.58 -0.24 -6.78 16 16 C -0.01 -0.13 6.71 -38.78 -0.26 -0.39 16 17 C -0.17 -3.83 8.96 -39.83 -0.36 -4.19 16 18 C -0.20 -4.82 9.74 -39.25 -0.38 -5.21 16 19 C 0.09 2.33 5.56 -106.81 -0.59 1.74 16 20 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 21 H 0.08 1.95 7.89 -52.49 -0.41 1.54 16 22 C 0.07 1.85 5.18 -17.34 -0.09 1.76 16 23 N -0.80 -20.97 10.93 55.54 0.61 -20.36 16 24 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 28 C -0.13 -3.42 8.62 -39.25 -0.34 -3.76 16 29 C -0.12 -2.98 9.92 -39.83 -0.40 -3.37 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.27 6.16 -51.93 -0.32 -0.05 16 32 H 0.06 0.42 6.23 -51.93 -0.32 0.10 16 33 H 0.08 0.72 6.61 -51.93 -0.34 0.38 16 34 H 0.08 0.45 6.73 -51.93 -0.35 0.10 16 35 H 0.06 0.23 5.79 -51.93 -0.30 -0.07 16 36 H 0.08 0.44 7.66 -51.93 -0.40 0.04 16 37 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.06 0.44 5.81 -51.93 -0.30 0.14 16 41 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 42 H 0.37 4.33 9.04 45.56 0.41 4.74 16 43 H 0.06 0.79 7.63 -51.93 -0.40 0.40 16 44 H 0.05 0.74 7.66 -51.92 -0.40 0.35 16 45 H 0.09 1.77 6.27 -52.49 -0.33 1.44 16 46 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 47 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 48 H 0.13 3.40 6.20 -52.49 -0.33 3.08 16 49 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -32.64 397.08 -8.57 -41.21 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.55 Total: 7.12 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -2.62 Total: -22.59 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.41 Total: -30.44 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.77 Total: -15.09 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.64 -8.57 -41.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157680252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.173 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds