Wall clock time and date at job start Tue Mar 31 2020 18:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46907 * 109.46707 * 2 1 4 4 C 1.46895 * 111.00229 * 63.53337 * 3 2 1 5 5 C 1.52994 * 109.47048 * 75.73826 * 4 3 2 6 6 H 1.08999 * 109.47680 * 303.25298 * 5 4 3 7 7 C 1.53009 * 109.47071 * 183.25585 * 5 4 3 8 8 C 1.47200 * 109.47390 * 63.26154 * 5 4 3 9 9 N 4.55564 * 139.17433 * 40.31270 * 2 1 3 10 10 C 1.46905 * 110.99844 * 299.57388 * 3 2 1 11 11 C 1.52991 * 109.47431 * 288.59990 * 10 3 2 12 12 H 1.09007 * 109.47284 * 57.13371 * 11 10 3 13 13 O 1.42896 * 109.47421 * 297.12991 * 11 10 3 14 14 C 1.52997 * 109.47291 * 177.12816 * 11 10 3 15 15 O 1.42902 * 109.47690 * 184.99712 * 14 11 10 16 16 C 1.35675 * 117.00572 * 179.97438 * 15 14 11 17 17 C 1.39310 * 119.81229 * 359.73102 * 16 15 14 18 18 C 1.36443 * 120.18135 * 179.75900 * 17 16 15 19 19 C 1.40832 * 119.80976 * 0.51064 * 18 17 16 20 20 C 1.41216 * 120.17782 * 179.71928 * 19 18 17 21 21 H 1.08001 * 119.99678 * 26.52197 * 20 19 18 22 22 C 1.39892 * 120.00054 * 206.52566 * 20 19 18 23 23 N 1.30877 * 120.00065 * 15.17145 * 22 20 19 24 24 Si 1.86795 * 120.00011 * 195.17384 * 22 20 19 25 25 H 1.48509 * 109.47254 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47389 * 119.99824 * 24 22 20 27 27 H 1.48502 * 109.47072 * 239.99987 * 24 22 20 28 28 C 1.40830 * 119.64197 * 359.74699 * 19 18 17 29 29 C 1.36434 * 119.81375 * 359.97438 * 28 19 18 30 30 H 1.08998 * 109.46857 * 180.94367 * 1 2 3 31 31 H 1.09003 * 109.47134 * 300.94019 * 1 2 3 32 32 H 1.09002 * 109.47275 * 60.94483 * 1 2 3 33 33 H 1.08999 * 109.47144 * 240.00053 * 2 1 3 34 34 H 1.08997 * 109.47337 * 119.99630 * 2 1 3 35 35 H 1.09001 * 109.47392 * 315.73776 * 4 3 2 36 36 H 1.08995 * 109.47037 * 195.74026 * 4 3 2 37 37 H 1.08998 * 109.46916 * 175.58024 * 7 5 4 38 38 H 1.08999 * 109.46962 * 55.57566 * 7 5 4 39 39 H 1.08997 * 109.46853 * 295.57814 * 7 5 4 40 40 H 1.09005 * 109.46617 * 48.60280 * 10 3 2 41 41 H 1.08995 * 109.46735 * 168.59782 * 10 3 2 42 42 H 0.96694 * 114.00329 * 300.00149 * 13 11 10 43 43 H 1.08999 * 109.47421 * 305.00440 * 14 11 10 44 44 H 1.09009 * 109.46821 * 65.00173 * 14 11 10 45 45 H 1.08002 * 119.91405 * 0.02562 * 17 16 15 46 46 H 1.07997 * 120.09180 * 180.25647 * 18 17 16 47 47 H 0.96989 * 120.00277 * 179.97438 * 23 22 20 48 48 H 1.07998 * 120.09169 * 179.97438 * 28 19 18 49 49 H 1.07997 * 119.90928 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6188 2.0852 1.2276 5 6 2.4956 1.6173 2.3909 6 1 2.4178 0.5348 2.4921 7 6 2.0255 2.2854 3.6847 8 6 3.8963 1.9863 2.1291 9 7 4.9773 2.2710 1.9268 10 6 1.5569 2.1070 -1.1928 11 6 2.2973 1.5836 -2.4250 12 1 2.1382 0.5090 -2.5153 13 8 3.6949 1.8485 -2.2892 14 6 1.7646 2.2847 -3.6762 15 8 2.3722 1.7144 -4.8371 16 6 2.0055 2.2263 -6.0389 17 6 1.0709 3.2578 -6.0962 18 6 0.7004 3.7816 -7.3004 19 6 1.2576 3.2692 -8.4880 20 6 0.8753 3.8015 -9.7389 21 1 0.5235 4.8204 -9.8074 22 6 0.9521 3.0092 -10.8892 23 7 1.0867 1.7117 -10.7823 24 14 0.8626 3.8029 -12.5777 25 1 0.7108 5.2725 -12.4265 26 1 2.1087 3.5084 -13.3299 27 1 -0.3034 3.2591 -13.3192 28 6 2.1978 2.2228 -8.4214 29 6 2.5618 1.7141 -7.2089 30 1 -0.3633 -1.0275 0.0169 31 1 -0.3633 0.5284 0.8815 32 1 -0.3634 0.4991 -0.8983 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5745 1.8637 1.4478 36 1 1.7411 3.1594 1.0897 37 1 2.5984 1.8932 4.5250 38 1 0.9667 2.0765 3.8375 39 1 2.1767 3.3624 3.6130 40 1 0.4855 1.9508 -1.3191 41 1 1.7572 3.1717 -1.0735 42 1 3.9109 2.7871 -2.2039 43 1 0.6836 2.1569 -3.7319 44 1 2.0028 3.3473 -3.6264 45 1 0.6415 3.6469 -5.1848 46 1 -0.0212 4.5840 -7.3429 47 1 1.1395 1.1623 -11.5798 48 1 2.6294 1.8242 -9.3276 49 1 3.2823 0.9113 -7.1560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157680252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:43 Heat of formation + Delta-G solvation = -63.003767 kcal Electronic energy + Delta-G solvation = -27707.117305 eV Core-core repulsion = 23826.502006 eV Total energy + Delta-G solvation = -3880.615298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.75729 -39.99297 -38.55648 -37.71321 -36.93708 -35.17239 -34.43316 -32.18249 -31.51589 -30.96154 -30.40437 -27.66375 -26.56654 -25.70554 -24.70162 -23.42824 -22.55838 -22.21630 -21.10304 -19.26194 -18.70628 -18.35953 -17.60513 -17.54974 -17.03622 -16.69831 -16.45835 -15.92322 -15.72674 -15.50322 -15.35859 -15.06597 -14.75498 -14.62672 -14.12933 -14.07919 -13.95476 -13.83783 -13.70769 -13.54073 -13.37824 -13.06525 -12.87256 -12.80670 -12.66334 -12.63490 -12.54598 -12.45590 -12.37735 -12.21188 -11.88225 -11.77388 -11.63934 -11.58393 -11.40563 -11.19525 -10.92281 -10.89525 -9.57665 -9.13059 -8.90908 -8.58355 -6.24551 0.93378 1.01268 1.39518 1.50280 1.54541 1.98086 2.02814 2.22718 2.36043 2.73216 3.01626 3.18924 3.53481 3.68722 3.84846 3.97530 3.99386 4.05723 4.21769 4.24813 4.27340 4.34271 4.38188 4.40995 4.44395 4.50157 4.60348 4.60648 4.71276 4.78471 4.85542 5.01099 5.03122 5.06136 5.14023 5.14982 5.20501 5.22293 5.28290 5.41902 5.46416 5.57605 5.63563 5.86836 6.05299 6.06998 6.18157 6.25362 6.56159 6.79401 6.82230 6.85484 6.94986 7.09261 8.38722 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.029286 B = 0.001874 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.869704 B =14936.936412 C =15129.769804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.042 3.958 3 N -0.547 5.547 4 C 0.054 3.946 5 C 0.013 3.987 6 H 0.129 0.871 7 C -0.141 4.141 8 C 0.244 3.756 9 N -0.509 5.509 10 C 0.033 3.967 11 C 0.124 3.876 12 H 0.091 0.909 13 O -0.562 6.562 14 C 0.030 3.970 15 O -0.333 6.333 16 C 0.004 3.996 17 C -0.166 4.166 18 C -0.204 4.204 19 C 0.053 3.947 20 C -0.498 4.498 21 H 0.077 0.923 22 C 0.030 3.970 23 N -0.836 5.836 24 Si 0.984 3.016 25 H -0.257 1.257 26 H -0.267 1.267 27 H -0.267 1.267 28 C -0.149 4.149 29 C -0.138 4.138 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.378 0.622 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.131 0.869 46 H 0.108 0.892 47 H 0.286 0.714 48 H 0.109 0.891 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 -0.945 26.445 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.085 4.085 3 N -0.270 5.270 4 C -0.075 4.075 5 C -0.009 4.009 6 H 0.147 0.853 7 C -0.200 4.200 8 C -0.073 4.073 9 N -0.186 5.186 10 C -0.095 4.095 11 C 0.064 3.936 12 H 0.109 0.891 13 O -0.368 6.368 14 C -0.047 4.047 15 O -0.249 6.249 16 C -0.040 4.040 17 C -0.184 4.184 18 C -0.223 4.223 19 C 0.051 3.949 20 C -0.528 4.528 21 H 0.095 0.905 22 C -0.183 4.183 23 N -0.464 5.464 24 Si 0.804 3.196 25 H -0.181 1.181 26 H -0.192 1.192 27 H -0.192 1.192 28 C -0.169 4.169 29 C -0.157 4.157 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.226 0.774 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.149 0.851 46 H 0.126 0.874 47 H 0.097 0.903 48 H 0.127 0.873 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.589 -1.538 25.997 26.289 hybrid contribution -1.181 0.656 -1.164 1.783 sum -4.769 -0.882 24.833 25.302 Atomic orbital electron populations 1.22410 0.96819 1.03213 1.02521 1.22268 0.93838 0.89389 1.03025 1.61979 1.60541 1.02811 1.01666 1.22364 0.98469 0.99050 0.87584 1.19220 0.80549 1.03837 0.97264 0.85310 1.21810 1.03839 1.00823 0.93498 1.29720 0.95155 0.91592 0.90838 1.81229 1.15176 1.11256 1.10912 1.22640 0.98547 0.98946 0.89366 1.21838 0.81485 1.00096 0.90204 0.89136 1.86620 1.23465 1.30879 1.95798 1.23529 0.98091 0.98153 0.84883 1.85891 1.66137 1.60433 1.12447 1.18709 1.01778 0.99008 0.84536 1.20704 1.00505 0.98851 0.98349 1.20842 1.04183 1.04891 0.92415 1.17972 0.90815 0.92487 0.93667 1.19729 1.40982 0.99766 0.92328 0.90524 1.26749 0.91645 0.94772 1.05117 1.69883 1.37320 1.06213 1.32946 0.85138 0.78790 0.79529 0.76095 1.18095 1.19150 1.19151 1.20903 0.99598 1.00754 0.95602 1.20014 1.02699 1.01918 0.91035 0.91476 0.90269 0.93118 0.92452 0.89022 0.89039 0.89991 0.91275 0.87916 0.92111 0.91109 0.89228 0.77379 0.91203 0.91748 0.85119 0.87379 0.90323 0.87325 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 9.30 71.98 0.67 -0.96 16 2 C 0.04 0.50 5.80 86.30 0.50 1.00 16 3 N -0.55 -7.30 4.17 -896.24 -3.74 -11.04 16 4 C 0.05 0.38 4.26 86.30 0.37 0.74 16 5 C 0.01 0.09 2.82 -12.60 -0.04 0.05 16 6 H 0.13 0.49 6.78 -2.39 -0.02 0.47 16 7 C -0.14 -0.30 9.15 71.99 0.66 0.35 16 8 C 0.24 4.37 14.31 89.44 1.28 5.65 16 9 N -0.51 -13.57 18.54 20.01 0.37 -13.20 16 10 C 0.03 0.49 4.45 86.30 0.38 0.88 16 11 C 0.12 2.91 3.26 30.59 0.10 3.01 16 12 H 0.09 2.37 6.63 -2.38 -0.02 2.35 16 13 O -0.56 -15.99 13.22 -144.34 -1.91 -17.90 16 14 C 0.03 0.84 4.36 71.98 0.31 1.15 16 15 O -0.33 -13.50 10.09 -85.28 -0.86 -14.36 16 16 C 0.00 0.17 6.71 22.79 0.15 0.32 16 17 C -0.17 -7.22 8.96 22.11 0.20 -7.02 16 18 C -0.20 -9.96 9.74 22.49 0.22 -9.75 16 19 C 0.05 2.90 5.56 -21.28 -0.12 2.78 16 20 C -0.50 -27.20 9.04 23.40 0.21 -26.99 16 21 H 0.08 4.01 7.89 -2.91 -0.02 3.99 16 22 C 0.03 1.55 5.18 85.24 0.44 2.00 16 23 N -0.84 -44.88 10.93 21.82 0.24 -44.65 16 24 Si 0.98 38.92 29.59 68.60 2.03 40.95 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 27 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 28 C -0.15 -8.18 8.62 22.48 0.19 -7.99 16 29 C -0.14 -6.97 9.92 22.11 0.22 -6.75 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.35 6.16 -2.39 -0.01 0.34 16 32 H 0.05 0.55 6.23 -2.39 -0.01 0.54 16 33 H 0.06 0.97 6.61 -2.39 -0.02 0.96 16 34 H 0.09 0.80 6.73 -2.39 -0.02 0.79 16 35 H 0.09 0.19 5.79 -2.39 -0.01 0.18 16 36 H 0.08 0.60 7.66 -2.39 -0.02 0.59 16 37 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.07 0.87 5.81 -2.38 -0.01 0.85 16 41 H 0.09 1.16 7.70 -2.39 -0.02 1.14 16 42 H 0.38 8.66 9.04 -74.06 -0.67 7.99 16 43 H 0.07 1.80 7.63 -2.39 -0.02 1.78 16 44 H 0.06 1.68 7.66 -2.38 -0.02 1.66 16 45 H 0.13 4.59 6.27 -2.91 -0.02 4.58 16 46 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 47 H 0.29 13.89 8.30 -92.72 -0.77 13.12 16 48 H 0.11 6.21 6.20 -2.91 -0.02 6.19 16 49 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -74.08 397.08 2.19 -71.88 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.30 Total: 29.81 kcal Atomic # 6 Polarization: -47.26 SS G_CDS: 5.76 Total: -41.50 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -3.13 Total: -68.89 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -2.77 Total: -32.26 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -74.08 2.19 -71.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157680252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.880 kcal (2) G-P(sol) polarization free energy of solvation -74.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds