Wall clock time and date at job start Tue Mar 31 2020 19:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47159 * 2 1 4 4 C 1.46504 * 120.00147 * 269.99891 * 3 2 1 5 5 C 1.50696 * 109.47333 * 270.00330 * 4 3 2 6 6 H 1.08005 * 120.00399 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99996 * 179.97438 * 5 4 3 8 8 N 1.31506 * 119.99905 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99893 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47250 * 60.00059 * 9 7 5 11 11 H 1.48495 * 109.47134 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47375 * 300.00280 * 9 7 5 13 13 C 1.34771 * 120.00296 * 89.99889 * 3 2 1 14 14 O 1.21279 * 120.00286 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00018 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47624 * 180.02562 * 15 13 3 17 17 C 1.46899 * 111.00355 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47043 * 324.99919 * 17 16 15 19 19 C 1.53002 * 109.47394 * 84.99974 * 17 16 15 20 20 C 1.52997 * 109.47254 * 204.99848 * 17 16 15 21 21 H 1.08998 * 110.83077 * 59.29375 * 20 17 16 22 22 C 1.54707 * 110.94039 * 295.58973 * 20 17 16 23 23 O 1.43867 * 102.74100 * 267.11576 * 22 20 17 24 24 C 1.36143 * 109.24487 * 332.25116 * 23 22 20 25 25 C 1.39286 * 129.88460 * 198.39934 * 24 23 22 26 26 C 1.37929 * 120.23778 * 181.01328 * 25 24 23 27 27 C 1.38288 * 120.35268 * 359.95919 * 26 25 24 28 28 C 1.38346 * 119.76489 * 359.88343 * 27 26 25 29 29 C 1.37747 * 119.98348 * 359.96278 * 28 27 26 30 30 H 1.09005 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47175 * 300.00091 * 1 2 3 32 32 H 1.09001 * 109.47170 * 60.00399 * 1 2 3 33 33 H 1.09005 * 109.47117 * 240.00101 * 2 1 3 34 34 H 1.09002 * 109.47579 * 120.00256 * 2 1 3 35 35 H 1.09000 * 109.46810 * 29.99848 * 4 3 2 36 36 H 1.08994 * 109.47137 * 149.99555 * 4 3 2 37 37 H 0.96996 * 119.99897 * 180.02562 * 8 7 5 38 38 H 1.09006 * 109.47702 * 59.99603 * 15 13 3 39 39 H 1.09006 * 109.47126 * 300.00254 * 15 13 3 40 40 H 1.00901 * 110.99813 * 303.95300 * 16 15 13 41 41 H 1.09002 * 109.47075 * 59.99404 * 19 17 16 42 42 H 1.08996 * 109.47407 * 180.02562 * 19 17 16 43 43 H 1.09000 * 109.46986 * 300.00133 * 19 17 16 44 44 H 1.09004 * 110.74961 * 25.45167 * 22 20 17 45 45 H 1.09002 * 110.75064 * 148.80136 * 22 20 17 46 46 H 1.07995 * 119.87730 * 0.99462 * 25 24 23 47 47 H 1.07998 * 119.82401 * 179.97438 * 26 25 24 48 48 H 1.07992 * 120.11902 * 179.88667 * 27 26 25 49 49 H 1.08004 * 120.01267 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1490 2.3897 -2.8781 8 7 3.3488 3.1249 -3.6186 9 14 5.9134 2.0967 -3.4170 10 1 6.1416 0.6400 -3.5938 11 1 6.1605 2.7956 -4.7037 12 1 6.8407 2.6209 -2.3823 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1598 1.1671 15 6 1.9923 1.3061 2.4722 16 7 2.3098 2.2063 3.5888 17 6 2.0762 1.5461 4.8801 18 1 1.2164 0.8812 4.7981 19 6 3.3134 0.7342 5.2690 20 6 1.8028 2.6036 5.9515 21 1 0.9315 3.2040 5.6900 22 6 3.0446 3.4990 6.1742 23 8 3.7230 2.8373 7.2566 24 6 2.8119 2.1664 8.0139 25 6 2.9166 1.6803 9.3149 26 6 1.8623 1.0020 9.8899 27 6 0.6922 0.7990 9.1813 28 6 0.5791 1.2815 7.8897 29 6 1.6296 1.9620 7.3145 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1384 37 1 3.6746 3.5148 -4.4448 38 1 2.6228 0.4187 2.5299 39 1 0.9444 1.0115 2.5302 40 1 3.2578 2.5451 3.5218 41 1 4.1733 1.3991 5.3510 42 1 3.1400 0.2440 6.2270 43 1 3.5082 -0.0192 4.5058 44 1 3.6699 3.5210 5.2816 45 1 2.7470 4.5070 6.4633 46 1 3.8267 1.8349 9.8754 47 1 1.9508 0.6275 10.8990 48 1 -0.1302 0.2658 9.6345 49 1 -0.3328 1.1249 7.3324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185642446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:30 Heat of formation + Delta-G solvation = -35.641919 kcal Electronic energy + Delta-G solvation = -28672.835091 eV Core-core repulsion = 24793.406292 eV Total energy + Delta-G solvation = -3879.428800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.62659 -39.16381 -37.72093 -36.73161 -35.22826 -33.05613 -32.64560 -30.56941 -30.11263 -29.91768 -28.72617 -27.57461 -25.60210 -24.31417 -23.03278 -22.91962 -22.37705 -21.89977 -20.10762 -18.48094 -17.40154 -16.87813 -16.73273 -16.53035 -16.25421 -15.79655 -15.59846 -15.34688 -14.64263 -14.41006 -14.29902 -13.92843 -13.70237 -13.61706 -13.35101 -13.06151 -12.94123 -12.92469 -12.63646 -12.41745 -12.18435 -12.00822 -11.89520 -11.86255 -11.77105 -11.44090 -11.17427 -11.06601 -10.98706 -10.90933 -10.75735 -10.72612 -10.52066 -10.13018 -9.64950 -9.19370 -8.92525 -8.45042 -8.43175 -8.24978 -7.64908 -6.04067 -4.08878 1.03285 1.14019 3.10380 3.31211 3.35888 3.37377 3.43221 3.45900 3.70787 4.16085 4.33500 4.41224 4.46474 4.66467 4.71595 4.78537 4.92104 5.07486 5.10172 5.12912 5.17069 5.25231 5.28203 5.30707 5.33879 5.41960 5.48310 5.50993 5.64484 5.68007 5.71808 5.78757 5.81266 5.85327 6.02049 6.04897 6.07985 6.20069 6.22588 6.23731 6.37497 6.47546 6.83167 6.99012 7.12376 7.35108 7.46493 7.56303 7.92500 8.24114 8.44439 8.90606 9.12263 9.56168 11.03928 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.002434 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.064558 B =11500.985523 C =12274.907180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.042 3.958 16 N -0.668 5.668 17 C 0.099 3.901 18 H 0.083 0.917 19 C -0.186 4.186 20 C -0.064 4.064 21 H 0.105 0.895 22 C 0.057 3.943 23 O -0.304 6.304 24 C 0.113 3.887 25 C -0.145 4.145 26 C -0.087 4.087 27 C -0.153 4.153 28 C -0.068 4.068 29 C -0.163 4.163 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.352 0.648 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.126 0.874 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 -7.503 24.227 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.090 4.090 16 N -0.301 5.301 17 C -0.012 4.012 18 H 0.101 0.899 19 C -0.244 4.244 20 C -0.083 4.083 21 H 0.123 0.877 22 C -0.018 4.018 23 O -0.218 6.218 24 C 0.067 3.933 25 C -0.164 4.164 26 C -0.105 4.105 27 C -0.172 4.172 28 C -0.086 4.086 29 C -0.165 4.165 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.172 0.828 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.129 0.871 45 H 0.097 0.903 46 H 0.143 0.857 47 H 0.146 0.854 48 H 0.143 0.857 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.765 -6.428 23.997 25.747 hybrid contribution 1.552 -0.865 -0.519 1.851 sum -5.213 -7.292 23.478 25.131 Atomic orbital electron populations 1.22222 0.96794 1.01342 1.02386 1.21403 0.93522 0.84317 1.02540 1.48252 1.64007 1.13178 1.07729 1.19244 0.96145 0.93661 0.78101 1.21388 0.96947 1.31944 1.06229 0.92655 1.24933 0.97805 0.94945 0.96415 1.69917 1.35703 1.33403 1.14314 0.86571 0.84862 0.78207 0.77840 1.20305 1.21167 1.20202 1.20162 0.78907 0.87070 0.84864 1.90672 1.45183 1.17744 1.86950 1.21923 1.02202 0.94475 0.90410 1.60196 1.32757 1.37348 0.99756 1.21407 0.98111 0.93294 0.88355 0.89862 1.22567 0.98995 1.00921 1.01950 1.21366 0.99544 0.96327 0.91049 0.87712 1.23909 0.93274 0.95565 0.89041 1.86867 1.31886 1.63380 1.39637 1.19607 0.88473 0.93453 0.91728 1.20261 1.00714 1.03473 0.91928 1.20852 0.92610 0.97316 0.99701 1.21015 0.98410 1.02846 0.94881 1.20346 0.97447 0.95952 0.94849 1.20758 0.95808 1.04109 0.95797 0.92244 0.93050 0.91990 0.89989 0.91969 0.95087 0.93892 0.92665 0.92833 0.88770 0.82783 0.91659 0.91970 0.92582 0.87112 0.90293 0.85667 0.85401 0.85651 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.15 0.38 -1.83 16 2 C 0.11 1.67 5.93 -4.05 -0.02 1.64 16 3 N -0.60 -12.43 2.46 -175.07 -0.43 -12.86 16 4 C 0.25 6.44 5.16 -5.19 -0.03 6.42 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.50 10.24 7.71 -10.99 -0.08 10.16 16 14 O -0.53 -13.13 15.78 5.56 0.09 -13.04 16 15 C 0.04 0.61 4.52 -4.98 -0.02 0.59 16 16 N -0.67 -9.04 5.65 -107.99 -0.61 -9.65 16 17 C 0.10 1.06 2.49 -67.71 -0.17 0.89 16 18 H 0.08 0.85 7.80 -51.93 -0.40 0.44 16 19 C -0.19 -1.99 8.00 37.16 0.30 -1.70 16 20 C -0.06 -0.65 3.28 -90.41 -0.30 -0.95 16 21 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 22 C 0.06 0.60 6.73 38.06 0.26 0.85 16 23 O -0.30 -3.59 10.01 -20.19 -0.20 -3.80 16 24 C 0.11 1.23 6.15 -38.95 -0.24 1.00 16 25 C -0.15 -1.36 10.06 -39.30 -0.40 -1.76 16 26 C -0.09 -0.67 10.02 -39.68 -0.40 -1.07 16 27 C -0.15 -1.18 10.07 -39.52 -0.40 -1.58 16 28 C -0.07 -0.59 10.03 -39.72 -0.40 -0.99 16 29 C -0.16 -1.65 4.70 -104.10 -0.49 -2.14 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 39 H 0.09 1.19 7.10 -51.93 -0.37 0.82 16 40 H 0.35 5.11 7.09 -39.29 -0.28 4.83 16 41 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 42 H 0.06 0.67 6.80 -51.93 -0.35 0.32 16 43 H 0.06 0.60 7.46 -51.93 -0.39 0.21 16 44 H 0.11 1.18 6.34 -51.93 -0.33 0.85 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 49 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -33.20 391.82 -9.63 -42.82 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.66 Total: 3.64 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.43 Total: -4.01 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.30 Total: -48.38 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.11 Total: -16.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.20 -9.63 -42.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185642446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.183 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds