Wall clock time and date at job start Tue Mar 31 2020 19:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47159 * 2 1 4 4 C 1.46504 * 120.00147 * 269.99891 * 3 2 1 5 5 C 1.50696 * 109.47333 * 270.00330 * 4 3 2 6 6 H 1.08005 * 120.00399 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99996 * 179.97438 * 5 4 3 8 8 N 1.31506 * 119.99905 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99893 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47250 * 60.00059 * 9 7 5 11 11 H 1.48495 * 109.47134 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47375 * 300.00280 * 9 7 5 13 13 C 1.34771 * 120.00296 * 89.99889 * 3 2 1 14 14 O 1.21279 * 120.00286 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00018 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47624 * 180.02562 * 15 13 3 17 17 C 1.46899 * 111.00355 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47043 * 324.99919 * 17 16 15 19 19 C 1.53002 * 109.47394 * 84.99974 * 17 16 15 20 20 C 1.52997 * 109.47254 * 204.99848 * 17 16 15 21 21 H 1.08998 * 110.83077 * 59.29375 * 20 17 16 22 22 C 1.54707 * 110.94039 * 295.58973 * 20 17 16 23 23 O 1.43867 * 102.74100 * 267.11576 * 22 20 17 24 24 C 1.36143 * 109.24487 * 332.25116 * 23 22 20 25 25 C 1.39286 * 129.88460 * 198.39934 * 24 23 22 26 26 C 1.37929 * 120.23778 * 181.01328 * 25 24 23 27 27 C 1.38288 * 120.35268 * 359.95919 * 26 25 24 28 28 C 1.38346 * 119.76489 * 359.88343 * 27 26 25 29 29 C 1.37747 * 119.98348 * 359.96278 * 28 27 26 30 30 H 1.09005 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47175 * 300.00091 * 1 2 3 32 32 H 1.09001 * 109.47170 * 60.00399 * 1 2 3 33 33 H 1.09005 * 109.47117 * 240.00101 * 2 1 3 34 34 H 1.09002 * 109.47579 * 120.00256 * 2 1 3 35 35 H 1.09000 * 109.46810 * 29.99848 * 4 3 2 36 36 H 1.08994 * 109.47137 * 149.99555 * 4 3 2 37 37 H 0.96996 * 119.99897 * 180.02562 * 8 7 5 38 38 H 1.09006 * 109.47702 * 59.99603 * 15 13 3 39 39 H 1.09006 * 109.47126 * 300.00254 * 15 13 3 40 40 H 1.00901 * 110.99813 * 303.95300 * 16 15 13 41 41 H 1.09002 * 109.47075 * 59.99404 * 19 17 16 42 42 H 1.08996 * 109.47407 * 180.02562 * 19 17 16 43 43 H 1.09000 * 109.46986 * 300.00133 * 19 17 16 44 44 H 1.09004 * 110.74961 * 25.45167 * 22 20 17 45 45 H 1.09002 * 110.75064 * 148.80136 * 22 20 17 46 46 H 1.07995 * 119.87730 * 0.99462 * 25 24 23 47 47 H 1.07998 * 119.82401 * 179.97438 * 26 25 24 48 48 H 1.07992 * 120.11902 * 179.88667 * 27 26 25 49 49 H 1.08004 * 120.01267 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1490 2.3897 -2.8781 8 7 3.3488 3.1249 -3.6186 9 14 5.9134 2.0967 -3.4170 10 1 6.1416 0.6400 -3.5938 11 1 6.1605 2.7956 -4.7037 12 1 6.8407 2.6209 -2.3823 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1598 1.1671 15 6 1.9923 1.3061 2.4722 16 7 2.3098 2.2063 3.5888 17 6 2.0762 1.5461 4.8801 18 1 1.2164 0.8812 4.7981 19 6 3.3134 0.7342 5.2690 20 6 1.8028 2.6036 5.9515 21 1 0.9315 3.2040 5.6900 22 6 3.0446 3.4990 6.1742 23 8 3.7230 2.8373 7.2566 24 6 2.8119 2.1664 8.0139 25 6 2.9166 1.6803 9.3149 26 6 1.8623 1.0020 9.8899 27 6 0.6922 0.7990 9.1813 28 6 0.5791 1.2815 7.8897 29 6 1.6296 1.9620 7.3145 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1384 37 1 3.6746 3.5148 -4.4448 38 1 2.6228 0.4187 2.5299 39 1 0.9444 1.0115 2.5302 40 1 3.2578 2.5451 3.5218 41 1 4.1733 1.3991 5.3510 42 1 3.1400 0.2440 6.2270 43 1 3.5082 -0.0192 4.5058 44 1 3.6699 3.5210 5.2816 45 1 2.7470 4.5070 6.4633 46 1 3.8267 1.8349 9.8754 47 1 1.9508 0.6275 10.8990 48 1 -0.1302 0.2658 9.6345 49 1 -0.3328 1.1249 7.3324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185642446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:29 Heat of formation + Delta-G solvation = -56.757488 kcal Electronic energy + Delta-G solvation = -28673.750731 eV Core-core repulsion = 24793.406292 eV Total energy + Delta-G solvation = -3880.344439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.38438 -40.71707 -38.44165 -37.73366 -36.85121 -34.93281 -33.78342 -31.67256 -31.27688 -30.70791 -29.59093 -29.21479 -27.05455 -25.22368 -24.63770 -23.91954 -23.49341 -22.71379 -20.96325 -19.95608 -18.63620 -18.28108 -17.71286 -17.66393 -17.58021 -17.04054 -16.70386 -16.42674 -16.30898 -15.56193 -15.24410 -15.03536 -14.80117 -14.65246 -14.47165 -14.25720 -14.09392 -13.87387 -13.75076 -13.50677 -13.41099 -13.27404 -13.18733 -13.00442 -12.83574 -12.69614 -12.64086 -12.47779 -12.44363 -12.13754 -11.89769 -11.83903 -11.73064 -11.67200 -11.52079 -10.64493 -10.57437 -9.83127 -9.45938 -9.39870 -9.02310 -8.22216 -6.37155 0.38134 0.47578 1.35531 1.39707 1.46997 1.87772 2.23733 2.37030 2.41269 2.79527 3.06846 3.12290 3.53600 3.61882 3.73107 3.87806 4.00215 4.08780 4.12728 4.23477 4.29985 4.34827 4.38421 4.42784 4.45980 4.49070 4.59376 4.61888 4.67163 4.74223 4.82108 4.89800 4.95701 5.00491 5.00652 5.06713 5.15168 5.20220 5.23333 5.40632 5.44928 5.54506 5.58248 5.61138 5.74249 5.83833 5.94526 6.07214 6.23285 6.29409 6.70921 6.84529 7.28974 7.53379 8.84536 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.002434 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.064558 B =11500.985523 C =12274.907180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.494 3.506 14 O -0.586 6.586 15 C 0.059 3.941 16 N -0.679 5.679 17 C 0.107 3.893 18 H 0.099 0.901 19 C -0.177 4.177 20 C -0.059 4.059 21 H 0.104 0.896 22 C 0.054 3.946 23 O -0.322 6.322 24 C 0.085 3.915 25 C -0.158 4.158 26 C -0.085 4.085 27 C -0.150 4.150 28 C -0.074 4.074 29 C -0.171 4.171 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.020 0.980 36 H -0.005 1.005 37 H 0.267 0.733 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.343 0.657 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.131 0.869 47 H 0.155 0.845 48 H 0.153 0.847 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 -10.245 26.226 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.283 3.717 14 O -0.466 6.466 15 C -0.072 4.072 16 N -0.311 5.311 17 C -0.003 4.003 18 H 0.117 0.883 19 C -0.235 4.235 20 C -0.078 4.078 21 H 0.122 0.878 22 C -0.021 4.021 23 O -0.236 6.236 24 C 0.040 3.960 25 C -0.176 4.176 26 C -0.103 4.103 27 C -0.168 4.168 28 C -0.092 4.092 29 C -0.173 4.173 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.038 0.962 36 H 0.013 0.987 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.141 0.859 40 H 0.163 0.837 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.149 0.851 47 H 0.173 0.827 48 H 0.170 0.830 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.473 -9.228 26.021 28.603 hybrid contribution 1.705 -0.014 -1.059 2.007 sum -5.768 -9.242 24.963 27.237 Atomic orbital electron populations 1.22152 0.94552 1.03474 1.01710 1.21741 0.95342 0.81359 1.03825 1.48281 1.64131 1.15075 1.06207 1.18660 0.95170 0.91462 0.80513 1.21674 0.97890 1.31971 1.06461 0.92912 1.25866 1.02360 0.94526 0.96492 1.70043 1.37804 1.34219 1.14763 0.85485 0.79075 0.79007 0.77347 1.18454 1.20387 1.20354 1.21255 0.77364 0.86653 0.86466 1.90639 1.47618 1.20461 1.87907 1.21836 1.04246 0.94141 0.87015 1.60202 1.32338 1.37893 1.00676 1.21411 0.98552 0.93414 0.86910 0.88287 1.22467 0.98487 1.00589 1.01999 1.21287 0.99091 0.96132 0.91323 0.87786 1.23916 0.93457 0.96012 0.88714 1.86829 1.32779 1.63906 1.40118 1.19902 0.88894 0.94609 0.92582 1.20550 1.01725 1.03753 0.91616 1.21219 0.91994 0.96273 1.00829 1.21395 0.99029 1.01989 0.94402 1.20646 0.97575 0.95489 0.95518 1.20784 0.96150 1.04887 0.95446 0.88618 0.91985 0.94441 0.91147 0.88209 0.96180 0.98723 0.92428 0.90525 0.85943 0.83741 0.92966 0.91937 0.92208 0.87913 0.89897 0.85123 0.82717 0.82980 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 10.24 71.98 0.74 -3.09 16 2 C 0.10 2.94 5.93 86.38 0.51 3.45 16 3 N -0.61 -25.35 2.46 -826.18 -2.03 -27.38 16 4 C 0.26 14.35 5.16 85.63 0.44 14.79 16 5 C -0.54 -31.40 9.39 25.60 0.24 -31.16 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 9 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.49 20.20 7.71 87.66 0.68 20.87 16 14 O -0.59 -30.33 15.78 -3.03 -0.05 -30.37 16 15 C 0.06 1.59 4.52 85.56 0.39 1.97 16 16 N -0.68 -17.77 5.65 -495.58 -2.80 -20.57 16 17 C 0.11 2.11 2.49 44.92 0.11 2.22 16 18 H 0.10 1.68 7.80 -2.39 -0.02 1.66 16 19 C -0.18 -3.55 8.00 71.98 0.58 -2.98 16 20 C -0.06 -1.17 3.28 -10.66 -0.03 -1.21 16 21 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 22 C 0.05 1.16 6.73 72.56 0.49 1.65 16 23 O -0.32 -7.77 10.01 -95.17 -0.95 -8.72 16 24 C 0.09 1.81 6.15 22.68 0.14 1.95 16 25 C -0.16 -2.77 10.06 22.45 0.23 -2.54 16 26 C -0.09 -1.10 10.02 22.21 0.22 -0.87 16 27 C -0.15 -1.82 10.07 22.31 0.22 -1.60 16 28 C -0.07 -1.10 10.03 22.18 0.22 -0.88 16 29 C -0.17 -3.23 4.70 -19.53 -0.09 -3.32 16 30 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 34 H 0.10 2.21 6.44 -2.39 -0.02 2.19 16 35 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 36 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.08 1.74 6.70 -2.38 -0.02 1.72 16 39 H 0.12 2.62 7.10 -2.38 -0.02 2.61 16 40 H 0.34 10.09 7.09 -89.69 -0.64 9.45 16 41 H 0.05 1.19 6.44 -2.39 -0.02 1.17 16 42 H 0.06 1.26 6.80 -2.39 -0.02 1.25 16 43 H 0.06 1.14 7.46 -2.39 -0.02 1.12 16 44 H 0.10 2.33 6.34 -2.38 -0.02 2.32 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 47 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 48 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 49 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -76.24 391.82 2.34 -73.90 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.31 Total: 22.28 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.54 Total: 0.11 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -4.54 Total: -104.46 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.00 Total: -39.10 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.24 2.34 -73.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185642446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.145 kcal (2) G-P(sol) polarization free energy of solvation -76.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds