Wall clock time and date at job start Tue Mar 31 2020 19:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47666 * 2 1 4 4 C 1.46507 * 119.99840 * 270.00182 * 3 2 1 5 5 C 1.50702 * 109.46914 * 269.99597 * 4 3 2 6 6 H 1.08003 * 120.00058 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99934 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99990 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47230 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47024 * 120.00181 * 9 7 5 12 12 H 1.48501 * 109.47497 * 240.00442 * 9 7 5 13 13 C 1.34777 * 120.00464 * 89.99291 * 3 2 1 14 14 O 1.21281 * 120.00234 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99800 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47212 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99784 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.46895 * 35.00422 * 17 16 15 19 19 C 1.52993 * 109.47258 * 274.99872 * 17 16 15 20 20 C 1.53005 * 109.46793 * 154.99972 * 17 16 15 21 21 H 1.08991 * 110.85559 * 175.55021 * 20 17 16 22 22 C 1.54714 * 110.93549 * 51.82593 * 20 17 16 23 23 O 1.43775 * 102.78181 * 216.58724 * 22 20 17 24 24 C 1.36140 * 109.21903 * 27.81857 * 23 22 20 25 25 C 1.39284 * 129.88618 * 161.40875 * 24 23 22 26 26 C 1.37929 * 120.23588 * 178.96180 * 25 24 23 27 27 C 1.38292 * 120.35275 * 0.03449 * 26 25 24 28 28 C 1.38346 * 119.76446 * 0.20086 * 27 26 25 29 29 C 1.37739 * 119.98342 * 359.93309 * 28 27 26 30 30 H 1.09006 * 109.47104 * 300.00756 * 1 2 3 31 31 H 1.09000 * 109.47193 * 60.00044 * 1 2 3 32 32 H 1.08993 * 109.47824 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47251 * 239.99579 * 2 1 3 34 34 H 1.09002 * 109.46680 * 119.99914 * 2 1 3 35 35 H 1.08992 * 109.47137 * 29.99342 * 4 3 2 36 36 H 1.08995 * 109.47039 * 149.99782 * 4 3 2 37 37 H 0.97000 * 119.99994 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.47538 * 59.99289 * 15 13 3 39 39 H 1.09006 * 109.47167 * 299.99746 * 15 13 3 40 40 H 1.00899 * 110.99651 * 56.04577 * 16 15 13 41 41 H 1.09002 * 109.47345 * 305.38304 * 19 17 16 42 42 H 1.09002 * 109.47057 * 65.38337 * 19 17 16 43 43 H 1.09003 * 109.47111 * 185.38298 * 19 17 16 44 44 H 1.08998 * 110.74733 * 334.91382 * 22 20 17 45 45 H 1.09004 * 110.74623 * 98.08404 * 22 20 17 46 46 H 1.07994 * 119.88164 * 359.23686 * 25 24 23 47 47 H 1.08004 * 119.82315 * 180.02562 * 26 25 24 48 48 H 1.07995 * 120.11528 * 180.18499 * 27 26 25 49 49 H 1.07996 * 120.00748 * 179.90825 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3894 -2.8780 8 7 3.3493 3.1254 -3.6182 9 14 5.9136 2.0963 -3.4169 10 1 6.6012 1.2411 -2.4163 11 1 5.9216 1.4167 -4.7372 12 1 6.6207 3.3977 -3.5257 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1598 1.1671 15 6 1.9922 1.3061 2.4722 16 7 2.3108 2.2060 3.5888 17 6 2.0771 1.5458 4.8802 18 1 2.3281 0.4883 4.7982 19 6 0.6046 1.6920 5.2686 20 6 2.9543 2.1966 5.9517 21 1 2.7419 1.7765 6.9347 22 6 2.7732 3.7331 5.9561 23 8 4.0987 4.2087 6.2460 24 6 5.0087 3.3006 5.7979 25 6 6.3678 3.4534 5.5347 26 6 7.1164 2.3791 5.1010 27 6 6.5250 1.1418 4.9228 28 6 5.1745 0.9830 5.1773 29 6 4.4244 2.0550 5.6079 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0284 36 1 2.0957 3.1409 -1.1385 37 1 3.6754 3.5158 -4.4441 38 1 2.6225 0.4187 2.5299 39 1 0.9442 1.0117 2.5301 40 1 1.7858 3.0651 3.5219 41 1 0.3288 2.7465 5.2574 42 1 -0.0149 1.1469 4.5565 43 1 0.4507 1.2869 6.2688 44 1 2.4413 4.0856 4.9796 45 1 2.0723 4.0370 6.7336 46 1 6.8383 4.4153 5.6751 47 1 8.1699 2.5050 4.8993 48 1 7.1153 0.3026 4.5859 49 1 4.7083 0.0188 5.0381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185642464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:34 Heat of formation + Delta-G solvation = -34.182100 kcal Electronic energy + Delta-G solvation = -29374.841686 eV Core-core repulsion = 25495.476189 eV Total energy + Delta-G solvation = -3879.365497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22577 -39.14166 -37.39281 -36.89793 -35.21913 -32.94050 -32.46833 -30.57100 -30.07493 -29.83756 -28.41448 -27.59831 -25.54686 -24.21547 -23.02136 -22.72629 -22.28644 -21.70586 -20.00047 -18.41598 -17.39976 -16.86618 -16.44720 -16.26943 -16.12743 -15.82501 -15.41995 -14.97838 -14.80543 -14.41943 -14.10365 -13.88870 -13.64954 -13.41190 -13.36227 -13.14877 -12.78541 -12.64561 -12.57308 -12.43510 -12.30202 -12.05726 -11.91926 -11.70306 -11.57780 -11.47760 -11.17997 -10.93308 -10.86519 -10.78149 -10.70226 -10.60591 -10.51833 -10.09823 -9.58221 -8.89362 -8.75493 -8.40932 -8.31994 -8.01744 -7.62504 -6.01575 -4.05665 1.43586 1.51033 3.32017 3.32729 3.39443 3.42365 3.48770 3.72602 3.84467 4.23512 4.29306 4.48561 4.61267 4.69936 4.89832 4.99778 5.03258 5.10356 5.12595 5.15800 5.26272 5.32974 5.34837 5.36399 5.46189 5.51076 5.55953 5.58158 5.61882 5.69845 5.72071 5.75667 5.78841 5.89441 6.00467 6.12477 6.21609 6.41567 6.44993 6.51920 6.59349 6.68471 6.86618 7.14086 7.29286 7.37297 7.47200 7.59029 7.95551 8.27033 8.46404 8.94602 9.15513 9.59585 11.06588 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.003794 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.382357 B = 7379.190026 C = 8994.363363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.044 3.956 16 N -0.662 5.662 17 C 0.095 3.905 18 H 0.085 0.915 19 C -0.186 4.186 20 C -0.066 4.066 21 H 0.095 0.905 22 C 0.058 3.942 23 O -0.307 6.307 24 C 0.108 3.892 25 C -0.139 4.139 26 C -0.089 4.089 27 C -0.148 4.148 28 C -0.064 4.064 29 C -0.139 4.139 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.349 0.651 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.123 0.877 47 H 0.127 0.873 48 H 0.123 0.877 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.915 -7.300 20.658 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.403 6.403 15 C -0.088 4.088 16 N -0.295 5.295 17 C -0.015 4.015 18 H 0.103 0.897 19 C -0.245 4.245 20 C -0.085 4.085 21 H 0.113 0.887 22 C -0.017 4.017 23 O -0.221 6.221 24 C 0.063 3.937 25 C -0.158 4.158 26 C -0.107 4.107 27 C -0.166 4.166 28 C -0.082 4.082 29 C -0.140 4.140 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.170 0.830 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.141 0.859 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.010 -6.493 20.551 21.761 hybrid contribution -0.182 -0.356 -0.593 0.715 sum -3.193 -6.849 19.958 21.340 Atomic orbital electron populations 1.22219 0.96948 1.01303 1.02188 1.21383 0.93336 0.84426 1.02579 1.48244 1.64072 1.13164 1.07723 1.19242 0.96240 0.93567 0.78108 1.21476 0.96923 1.31699 1.06060 0.92451 1.24926 0.97800 0.94950 0.96433 1.69940 1.35593 1.33630 1.14364 0.86459 0.84766 0.78086 0.78226 1.19783 1.21031 1.20870 1.20176 0.78869 0.87142 0.84861 1.90682 1.44710 1.18032 1.86906 1.21900 0.99729 0.96637 0.90532 1.60193 1.62902 1.06748 0.99629 1.21430 0.92395 0.98652 0.89032 0.89716 1.22575 0.97228 1.02457 1.02285 1.21457 0.92002 0.96147 0.98920 0.88686 1.23864 0.83006 0.92399 1.02456 1.86783 1.15373 1.44625 1.75358 1.19485 0.91242 0.87925 0.95035 1.20201 0.90853 1.00037 1.04666 1.20800 0.99588 0.92241 0.98035 1.20971 0.94722 0.97737 1.03205 1.20150 0.93338 0.97479 0.97219 1.20427 0.94859 0.94032 1.04643 0.93311 0.92027 0.92243 0.89979 0.91942 0.95149 0.94013 0.92839 0.88883 0.93063 0.83043 0.92127 0.92176 0.91743 0.89702 0.88368 0.85887 0.85551 0.85878 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.15 0.38 -1.79 16 2 C 0.11 1.67 5.93 -4.05 -0.02 1.65 16 3 N -0.60 -12.49 2.46 -175.07 -0.43 -12.92 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 5 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.50 10.35 7.71 -10.99 -0.08 10.26 16 14 O -0.53 -13.37 15.78 5.56 0.09 -13.28 16 15 C 0.04 0.64 4.52 -4.98 -0.02 0.61 16 16 N -0.66 -9.01 4.98 -107.99 -0.54 -9.55 16 17 C 0.10 0.94 2.33 -67.71 -0.16 0.78 16 18 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 19 C -0.19 -1.42 8.96 37.15 0.33 -1.08 16 20 C -0.07 -0.69 3.00 -90.40 -0.27 -0.96 16 21 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 22 C 0.06 0.64 6.79 38.06 0.26 0.90 16 23 O -0.31 -4.39 11.11 -20.19 -0.22 -4.62 16 24 C 0.11 1.58 7.03 -38.95 -0.27 1.31 16 25 C -0.14 -1.91 10.06 -39.31 -0.40 -2.31 16 26 C -0.09 -1.11 10.02 -39.67 -0.40 -1.51 16 27 C -0.15 -1.83 10.07 -39.52 -0.40 -2.23 16 28 C -0.06 -0.80 9.93 -39.72 -0.39 -1.19 16 29 C -0.14 -1.82 5.36 -104.10 -0.56 -2.38 16 30 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.09 1.25 7.32 -51.93 -0.38 0.87 16 39 H 0.05 0.61 6.59 -51.93 -0.34 0.27 16 40 H 0.35 4.94 6.73 -39.29 -0.26 4.67 16 41 H 0.06 0.45 7.63 -51.93 -0.40 0.06 16 42 H 0.06 0.46 7.59 -51.93 -0.39 0.07 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 1.04 6.13 -51.93 -0.32 0.72 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 48 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 49 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 396.49 15.07 5.97 5.97 Total: -1.00 -34.98 396.49 -9.65 -44.63 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.78 Total: 3.83 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.45 Total: -5.12 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.23 Total: -48.64 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.14 Total: -17.90 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.98 -9.65 -44.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185642464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.452 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds