Wall clock time and date at job start Tue Mar 31 2020 19:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47666 * 2 1 4 4 C 1.46507 * 119.99840 * 270.00182 * 3 2 1 5 5 C 1.50702 * 109.46914 * 269.99597 * 4 3 2 6 6 H 1.08003 * 120.00058 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99934 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99990 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47230 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47024 * 120.00181 * 9 7 5 12 12 H 1.48501 * 109.47497 * 240.00442 * 9 7 5 13 13 C 1.34777 * 120.00464 * 89.99291 * 3 2 1 14 14 O 1.21281 * 120.00234 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99800 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47212 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99784 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.46895 * 35.00422 * 17 16 15 19 19 C 1.52993 * 109.47258 * 274.99872 * 17 16 15 20 20 C 1.53005 * 109.46793 * 154.99972 * 17 16 15 21 21 H 1.08991 * 110.85559 * 175.55021 * 20 17 16 22 22 C 1.54714 * 110.93549 * 51.82593 * 20 17 16 23 23 O 1.43775 * 102.78181 * 216.58724 * 22 20 17 24 24 C 1.36140 * 109.21903 * 27.81857 * 23 22 20 25 25 C 1.39284 * 129.88618 * 161.40875 * 24 23 22 26 26 C 1.37929 * 120.23588 * 178.96180 * 25 24 23 27 27 C 1.38292 * 120.35275 * 0.03449 * 26 25 24 28 28 C 1.38346 * 119.76446 * 0.20086 * 27 26 25 29 29 C 1.37739 * 119.98342 * 359.93309 * 28 27 26 30 30 H 1.09006 * 109.47104 * 300.00756 * 1 2 3 31 31 H 1.09000 * 109.47193 * 60.00044 * 1 2 3 32 32 H 1.08993 * 109.47824 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47251 * 239.99579 * 2 1 3 34 34 H 1.09002 * 109.46680 * 119.99914 * 2 1 3 35 35 H 1.08992 * 109.47137 * 29.99342 * 4 3 2 36 36 H 1.08995 * 109.47039 * 149.99782 * 4 3 2 37 37 H 0.97000 * 119.99994 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.47538 * 59.99289 * 15 13 3 39 39 H 1.09006 * 109.47167 * 299.99746 * 15 13 3 40 40 H 1.00899 * 110.99651 * 56.04577 * 16 15 13 41 41 H 1.09002 * 109.47345 * 305.38304 * 19 17 16 42 42 H 1.09002 * 109.47057 * 65.38337 * 19 17 16 43 43 H 1.09003 * 109.47111 * 185.38298 * 19 17 16 44 44 H 1.08998 * 110.74733 * 334.91382 * 22 20 17 45 45 H 1.09004 * 110.74623 * 98.08404 * 22 20 17 46 46 H 1.07994 * 119.88164 * 359.23686 * 25 24 23 47 47 H 1.08004 * 119.82315 * 180.02562 * 26 25 24 48 48 H 1.07995 * 120.11528 * 180.18499 * 27 26 25 49 49 H 1.07996 * 120.00748 * 179.90825 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3894 -2.8780 8 7 3.3493 3.1254 -3.6182 9 14 5.9136 2.0963 -3.4169 10 1 6.6012 1.2411 -2.4163 11 1 5.9216 1.4167 -4.7372 12 1 6.6207 3.3977 -3.5257 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1598 1.1671 15 6 1.9922 1.3061 2.4722 16 7 2.3108 2.2060 3.5888 17 6 2.0771 1.5458 4.8802 18 1 2.3281 0.4883 4.7982 19 6 0.6046 1.6920 5.2686 20 6 2.9543 2.1966 5.9517 21 1 2.7419 1.7765 6.9347 22 6 2.7732 3.7331 5.9561 23 8 4.0987 4.2087 6.2460 24 6 5.0087 3.3006 5.7979 25 6 6.3678 3.4534 5.5347 26 6 7.1164 2.3791 5.1010 27 6 6.5250 1.1418 4.9228 28 6 5.1745 0.9830 5.1773 29 6 4.4244 2.0550 5.6079 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0284 36 1 2.0957 3.1409 -1.1385 37 1 3.6754 3.5158 -4.4441 38 1 2.6225 0.4187 2.5299 39 1 0.9442 1.0117 2.5301 40 1 1.7858 3.0651 3.5219 41 1 0.3288 2.7465 5.2574 42 1 -0.0149 1.1469 4.5565 43 1 0.4507 1.2869 6.2688 44 1 2.4413 4.0856 4.9796 45 1 2.0723 4.0370 6.7336 46 1 6.8383 4.4153 5.6751 47 1 8.1699 2.5050 4.8993 48 1 7.1153 0.3026 4.5859 49 1 4.7083 0.0188 5.0381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185642464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:33 Heat of formation + Delta-G solvation = -57.040401 kcal Electronic energy + Delta-G solvation = -29375.832897 eV Core-core repulsion = 25495.476189 eV Total energy + Delta-G solvation = -3880.356707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.14806 -40.69293 -38.33686 -37.89252 -36.85670 -34.93411 -33.62841 -31.69574 -31.38034 -30.78063 -29.48681 -29.05397 -26.99765 -25.11035 -24.62450 -23.87383 -23.59586 -22.66927 -20.86500 -19.92698 -18.63303 -18.35088 -17.98803 -17.57427 -17.32517 -16.87940 -16.64116 -16.42061 -16.03022 -15.69696 -15.53250 -14.83493 -14.77874 -14.58133 -14.36495 -14.30340 -14.18745 -13.83045 -13.58285 -13.49207 -13.41747 -13.24826 -13.11436 -13.08326 -12.87471 -12.72565 -12.62972 -12.48411 -12.33873 -12.16689 -11.86236 -11.70577 -11.67868 -11.62459 -11.49027 -10.65349 -10.52815 -9.71956 -9.43312 -9.25879 -8.99093 -8.22705 -6.37085 0.48503 0.51958 1.34342 1.37503 1.48974 1.89943 2.27800 2.40927 2.43801 2.89865 3.06706 3.19392 3.44693 3.74189 3.75947 3.92726 4.10369 4.12275 4.22551 4.25610 4.28137 4.36914 4.40112 4.46706 4.51971 4.57896 4.60444 4.64059 4.66048 4.76699 4.90138 4.95695 4.99979 5.00333 5.01744 5.06345 5.21245 5.22560 5.31883 5.39656 5.46133 5.56579 5.58857 5.64083 5.76859 5.86581 6.03663 6.07641 6.33635 6.36169 6.71677 6.86664 7.29579 7.56275 8.84345 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.003794 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.382357 B = 7379.190026 C = 8994.363363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.492 3.508 14 O -0.589 6.589 15 C 0.064 3.936 16 N -0.684 5.684 17 C 0.101 3.899 18 H 0.099 0.901 19 C -0.180 4.180 20 C -0.059 4.059 21 H 0.122 0.878 22 C 0.052 3.948 23 O -0.329 6.329 24 C 0.075 3.925 25 C -0.162 4.162 26 C -0.100 4.100 27 C -0.157 4.157 28 C -0.074 4.074 29 C -0.146 4.146 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.021 0.979 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.342 0.658 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.146 0.854 48 H 0.144 0.856 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -10.383 22.279 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.469 6.469 15 C -0.068 4.068 16 N -0.317 5.317 17 C -0.009 4.009 18 H 0.117 0.883 19 C -0.239 4.239 20 C -0.077 4.077 21 H 0.140 0.860 22 C -0.023 4.023 23 O -0.244 6.244 24 C 0.030 3.970 25 C -0.181 4.181 26 C -0.117 4.117 27 C -0.175 4.175 28 C -0.092 4.092 29 C -0.147 4.147 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.039 0.961 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.162 0.838 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.164 0.836 48 H 0.162 0.838 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.506 -9.637 22.195 24.450 hybrid contribution -0.048 0.633 -1.089 1.260 sum -3.554 -9.004 21.106 23.220 Atomic orbital electron populations 1.22142 0.94544 1.03465 1.01583 1.21730 0.95278 0.81378 1.03841 1.48273 1.64149 1.15102 1.06151 1.18644 0.95123 0.91371 0.80637 1.21732 0.97938 1.31763 1.06291 0.93109 1.25837 1.02276 0.94520 0.96495 1.70054 1.37662 1.34364 1.14847 0.85403 0.79193 0.77984 0.78456 1.19156 1.19205 1.20925 1.21374 0.77225 0.86682 0.86608 1.90648 1.47381 1.20947 1.87934 1.21772 1.02036 0.96018 0.86934 1.60161 1.63694 1.06858 1.01005 1.21491 0.93838 0.98733 0.86814 0.88288 1.22508 0.95171 1.02626 1.03608 1.21540 0.90369 0.95453 1.00353 0.86015 1.24068 0.82225 0.93348 1.02655 1.86744 1.16583 1.45466 1.75593 1.19865 0.91792 0.89022 0.96320 1.20494 0.91304 1.00822 1.05488 1.21114 1.00629 0.92195 0.97804 1.21355 0.95247 0.98222 1.02641 1.20505 0.93525 0.98342 0.96825 1.20809 0.96388 0.93488 1.03996 0.92052 0.94546 0.88590 0.91264 0.88107 0.96147 0.98900 0.92471 0.87026 0.89623 0.83810 0.92404 0.91730 0.89575 0.91511 0.85378 0.85708 0.83626 0.83785 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.10 2.93 5.93 86.38 0.51 3.44 16 3 N -0.60 -25.41 2.46 -826.18 -2.03 -27.44 16 4 C 0.26 14.49 5.16 85.63 0.44 14.93 16 5 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 9 Si 0.97 46.04 29.54 68.60 2.03 48.06 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 C 0.49 20.30 7.71 87.66 0.68 20.97 16 14 O -0.59 -31.22 15.78 -3.03 -0.05 -31.26 16 15 C 0.06 1.67 4.52 85.56 0.39 2.06 16 16 N -0.68 -17.53 4.98 -495.56 -2.47 -20.00 16 17 C 0.10 1.64 2.33 44.91 0.10 1.75 16 18 H 0.10 1.38 7.80 -2.39 -0.02 1.36 16 19 C -0.18 -2.03 8.96 71.98 0.65 -1.39 16 20 C -0.06 -1.07 3.00 -10.65 -0.03 -1.10 16 21 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 22 C 0.05 1.10 6.79 72.57 0.49 1.60 16 23 O -0.33 -9.58 11.11 -95.14 -1.06 -10.63 16 24 C 0.07 2.22 7.03 22.68 0.16 2.37 16 25 C -0.16 -4.61 10.06 22.45 0.23 -4.39 16 26 C -0.10 -2.47 10.02 22.21 0.22 -2.25 16 27 C -0.16 -3.65 10.07 22.31 0.22 -3.43 16 28 C -0.07 -1.71 9.93 22.18 0.22 -1.49 16 29 C -0.15 -3.64 5.36 -19.53 -0.10 -3.75 16 30 H 0.06 1.27 7.22 -2.38 -0.02 1.25 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 34 H 0.10 2.19 6.44 -2.39 -0.02 2.17 16 35 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 36 H -0.01 -0.46 7.42 -2.39 -0.02 -0.47 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.11 2.54 7.32 -2.39 -0.02 2.52 16 39 H 0.09 1.68 6.59 -2.38 -0.02 1.66 16 40 H 0.34 9.58 6.73 -89.69 -0.60 8.97 16 41 H 0.06 0.70 7.63 -2.39 -0.02 0.68 16 42 H 0.06 0.70 7.59 -2.39 -0.02 0.68 16 43 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 1.66 6.13 -2.39 -0.01 1.64 16 45 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 47 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 48 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 49 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -81.88 396.49 2.66 -79.22 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.34 Total: 23.35 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.61 Total: -4.24 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -4.21 Total: -104.49 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.10 Total: -41.90 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.88 2.66 -79.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185642464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.178 kcal (2) G-P(sol) polarization free energy of solvation -81.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds