Wall clock time and date at job start Tue Mar 31 2020 19:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46785 * 2 1 4 4 C 1.46502 * 119.99750 * 269.99907 * 3 2 1 5 5 C 1.50703 * 109.46995 * 269.99824 * 4 3 2 6 6 H 1.07999 * 119.99841 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00030 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99835 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99756 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47212 * 90.00053 * 9 7 5 11 11 H 1.48507 * 109.47079 * 210.00023 * 9 7 5 12 12 H 1.48499 * 109.47391 * 329.99689 * 9 7 5 13 13 C 1.34778 * 120.00230 * 89.99627 * 3 2 1 14 14 O 1.21280 * 119.99958 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99953 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47005 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99994 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47076 * 324.99796 * 17 16 15 19 19 C 1.52998 * 109.46816 * 84.99934 * 17 16 15 20 20 C 1.52996 * 109.47011 * 205.00011 * 17 16 15 21 21 H 1.08998 * 110.86422 * 303.73586 * 20 17 16 22 22 C 1.54707 * 110.94260 * 67.46569 * 20 17 16 23 23 O 1.43776 * 102.78759 * 92.84654 * 22 20 17 24 24 C 1.36133 * 109.24920 * 27.69182 * 23 22 20 25 25 C 1.39291 * 129.88066 * 161.39944 * 24 23 22 26 26 C 1.37924 * 120.24072 * 179.09269 * 25 24 23 27 27 C 1.38292 * 120.35086 * 0.55205 * 26 25 24 28 28 C 1.38353 * 119.76570 * 359.65977 * 27 26 25 29 29 C 1.37739 * 119.97408 * 0.17216 * 28 27 26 30 30 H 1.08994 * 109.47541 * 60.00874 * 1 2 3 31 31 H 1.09000 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47777 * 299.99777 * 1 2 3 33 33 H 1.08991 * 109.47454 * 239.99961 * 2 1 3 34 34 H 1.08997 * 109.47043 * 119.99067 * 2 1 3 35 35 H 1.09002 * 109.47516 * 29.99730 * 4 3 2 36 36 H 1.08995 * 109.47388 * 150.00339 * 4 3 2 37 37 H 0.97001 * 119.99757 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47018 * 59.99558 * 15 13 3 39 39 H 1.09001 * 109.47071 * 299.99714 * 15 13 3 40 40 H 1.00898 * 111.00272 * 303.95118 * 16 15 13 41 41 H 1.09001 * 109.47045 * 60.00752 * 19 17 16 42 42 H 1.09009 * 109.46620 * 179.97438 * 19 17 16 43 43 H 1.08992 * 109.47411 * 300.00124 * 19 17 16 44 44 H 1.08995 * 110.75291 * 211.17188 * 22 20 17 45 45 H 1.09001 * 110.75024 * 334.34391 * 22 20 17 46 46 H 1.07998 * 119.87776 * 359.31627 * 25 24 23 47 47 H 1.08004 * 119.82976 * 180.31804 * 26 25 24 48 48 H 1.08002 * 120.12102 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.01311 * 180.14249 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 5.3912 2.1835 -3.2573 9 14 3.0126 3.4350 -3.9293 10 1 3.1160 4.8553 -3.5083 11 1 3.4056 3.3117 -5.3561 12 1 1.6130 2.9689 -3.7594 13 6 2.2428 2.0167 1.1672 14 8 2.6465 3.1603 1.1671 15 6 1.9921 1.3061 2.4723 16 7 2.3107 2.2061 3.5888 17 6 2.0772 1.5459 4.8802 18 1 1.2169 0.8817 4.7984 19 6 3.3140 0.7332 5.2684 20 6 1.8049 2.6035 5.9517 21 1 2.6242 3.3202 6.0068 22 6 0.4593 3.3211 5.6910 23 8 -0.4692 2.5495 6.4718 24 6 0.1879 1.9847 7.5217 25 6 -0.3128 1.4597 8.7108 26 6 0.5433 0.9120 9.6432 27 6 1.9065 0.8892 9.4118 28 6 2.4123 1.4126 8.2353 29 6 1.5588 1.9569 7.3012 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.5816 1.6876 -2.0285 36 1 2.0954 3.1410 -1.1385 37 1 5.7171 2.5733 -4.0836 38 1 2.6227 0.4189 2.5298 39 1 0.9443 1.0116 2.5302 40 1 3.2590 2.5442 3.5215 41 1 4.1743 1.3975 5.3503 42 1 3.1409 0.2437 6.2269 43 1 3.5080 -0.0202 4.5050 44 1 0.4968 4.3519 6.0432 45 1 0.2013 3.2853 4.6326 46 1 -1.3756 1.4783 8.9016 47 1 0.1473 0.5021 10.5607 48 1 2.5735 0.4598 10.1447 49 1 3.4761 1.3948 8.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185642484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:38 Heat of formation + Delta-G solvation = -33.690991 kcal Electronic energy + Delta-G solvation = -28677.982248 eV Core-core repulsion = 24798.638047 eV Total energy + Delta-G solvation = -3879.344201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49038 -39.27801 -37.64535 -36.92479 -35.34676 -33.09158 -32.61308 -30.53545 -30.30533 -29.86330 -29.17862 -28.01095 -25.69950 -23.88708 -22.98677 -22.59693 -22.27773 -21.80019 -20.78528 -18.44915 -17.42607 -16.97512 -16.93472 -16.55184 -16.10246 -15.92662 -15.71247 -15.32180 -14.72091 -14.49946 -14.34603 -13.88174 -13.70469 -13.52244 -13.45541 -13.18196 -12.99267 -12.86771 -12.74065 -12.48713 -12.31999 -12.17089 -12.04909 -11.79861 -11.69470 -11.63280 -11.36556 -11.15652 -10.98136 -10.90294 -10.86599 -10.72914 -10.49827 -10.15771 -9.55117 -9.21411 -9.01019 -8.59517 -8.46211 -8.29449 -7.71822 -6.09603 -4.08173 1.02622 1.13568 3.13703 3.28897 3.34715 3.35070 3.37040 3.42224 3.63354 4.09477 4.33246 4.39193 4.43751 4.67428 4.70919 4.79582 4.91592 5.00255 5.10696 5.12915 5.15836 5.21224 5.25023 5.27492 5.36768 5.37258 5.45614 5.51443 5.55740 5.58456 5.70465 5.73787 5.80887 5.84086 5.95983 5.98464 6.07064 6.14101 6.19225 6.23069 6.38135 6.39174 6.66757 6.86191 6.97896 7.00774 7.34239 7.36426 7.60948 8.26287 8.46361 8.92053 9.00014 9.51048 11.03783 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.002390 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.046273 B =11712.479693 C =11917.244475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.528 6.528 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.098 3.902 18 H 0.081 0.919 19 C -0.187 4.187 20 C -0.063 4.063 21 H 0.098 0.902 22 C 0.060 3.940 23 O -0.306 6.306 24 C 0.111 3.889 25 C -0.144 4.144 26 C -0.086 4.086 27 C -0.154 4.154 28 C -0.067 4.067 29 C -0.165 4.165 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.355 0.645 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.125 0.875 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 -5.472 23.791 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.096 3.904 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.404 6.404 15 C -0.090 4.090 16 N -0.301 5.301 17 C -0.012 4.012 18 H 0.099 0.901 19 C -0.245 4.245 20 C -0.083 4.083 21 H 0.117 0.883 22 C -0.014 4.014 23 O -0.220 6.220 24 C 0.065 3.935 25 C -0.163 4.163 26 C -0.104 4.104 27 C -0.173 4.173 28 C -0.085 4.085 29 C -0.166 4.166 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.175 0.825 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.143 0.857 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.921 -4.495 23.504 26.304 hybrid contribution 0.533 -0.166 -0.719 0.911 sum -10.388 -4.661 22.785 25.471 Atomic orbital electron populations 1.22235 0.96726 1.01571 1.02311 1.21434 0.93438 0.83914 1.02997 1.47932 1.64396 1.13331 1.07007 1.19631 0.97220 0.93411 0.80089 1.21320 0.95352 1.32842 1.07083 0.90895 1.24861 0.95007 0.95819 0.97380 1.69896 1.15138 1.45066 1.23560 0.86840 0.81460 0.81615 0.79711 1.19899 1.21107 1.19077 1.20190 0.78597 0.87048 0.84855 1.90674 1.45005 1.17786 1.86944 1.21904 1.02297 0.94578 0.90187 1.60157 1.33039 1.37230 0.99695 1.21418 0.98095 0.93372 0.88365 0.90076 1.22569 0.98568 1.00907 1.02485 1.21326 0.99323 0.97238 0.90363 0.88349 1.23911 0.86047 0.94044 0.97429 1.86848 1.36173 1.63070 1.35892 1.19660 0.90651 0.94492 0.88674 1.20268 1.00651 1.03994 0.91394 1.20857 0.93238 0.97861 0.98454 1.21029 0.95423 1.02924 0.97892 1.20378 0.99318 0.96311 0.92484 1.20748 0.93909 1.05131 0.96832 0.92178 0.92013 0.92918 0.89748 0.91599 0.95319 0.94585 0.92581 0.92615 0.88714 0.82458 0.92059 0.91497 0.92302 0.90684 0.86052 0.85630 0.85378 0.85654 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -11.92 2.46 -175.06 -0.43 -12.35 16 4 C 0.22 5.27 4.23 -5.19 -0.02 5.25 16 5 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 9 Si 0.88 21.60 27.47 -169.99 -4.67 16.94 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.51 9.99 7.71 -10.99 -0.08 9.90 16 14 O -0.53 -12.66 15.78 5.56 0.09 -12.58 16 15 C 0.04 0.60 4.52 -4.98 -0.02 0.58 16 16 N -0.67 -8.75 5.41 -107.99 -0.58 -9.33 16 17 C 0.10 1.03 2.14 -67.71 -0.14 0.89 16 18 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 19 C -0.19 -1.76 8.80 37.16 0.33 -1.44 16 20 C -0.06 -0.64 2.89 -90.41 -0.26 -0.90 16 21 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 22 C 0.06 0.65 7.48 38.06 0.28 0.93 16 23 O -0.31 -3.72 11.10 -20.16 -0.22 -3.95 16 24 C 0.11 1.23 7.04 -38.95 -0.27 0.96 16 25 C -0.14 -1.35 10.06 -39.30 -0.40 -1.75 16 26 C -0.09 -0.66 10.02 -39.68 -0.40 -1.06 16 27 C -0.15 -1.19 10.07 -39.52 -0.40 -1.59 16 28 C -0.07 -0.58 8.50 -39.72 -0.34 -0.92 16 29 C -0.16 -1.67 5.09 -104.10 -0.53 -2.20 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 35 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 39 H 0.09 1.18 7.10 -51.93 -0.37 0.81 16 40 H 0.36 5.01 8.17 -39.29 -0.32 4.69 16 41 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 42 H 0.07 0.59 5.93 -51.92 -0.31 0.28 16 43 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.12 1.38 7.58 -51.93 -0.39 0.99 16 46 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 48 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.12 0.89 7.75 -52.49 -0.41 0.49 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -33.91 392.49 -9.23 -43.14 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.76 Total: 3.96 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.34 Total: -4.91 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.24 Total: -48.53 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.14 Total: -16.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.91 -9.23 -43.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185642484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.453 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds