Wall clock time and date at job start Tue Mar 31 2020 19:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46785 * 2 1 4 4 C 1.46502 * 119.99750 * 269.99907 * 3 2 1 5 5 C 1.50703 * 109.46995 * 269.99824 * 4 3 2 6 6 H 1.07999 * 119.99841 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00030 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99835 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99756 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47212 * 90.00053 * 9 7 5 11 11 H 1.48507 * 109.47079 * 210.00023 * 9 7 5 12 12 H 1.48499 * 109.47391 * 329.99689 * 9 7 5 13 13 C 1.34778 * 120.00230 * 89.99627 * 3 2 1 14 14 O 1.21280 * 119.99958 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99953 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47005 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99994 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47076 * 324.99796 * 17 16 15 19 19 C 1.52998 * 109.46816 * 84.99934 * 17 16 15 20 20 C 1.52996 * 109.47011 * 205.00011 * 17 16 15 21 21 H 1.08998 * 110.86422 * 303.73586 * 20 17 16 22 22 C 1.54707 * 110.94260 * 67.46569 * 20 17 16 23 23 O 1.43776 * 102.78759 * 92.84654 * 22 20 17 24 24 C 1.36133 * 109.24920 * 27.69182 * 23 22 20 25 25 C 1.39291 * 129.88066 * 161.39944 * 24 23 22 26 26 C 1.37924 * 120.24072 * 179.09269 * 25 24 23 27 27 C 1.38292 * 120.35086 * 0.55205 * 26 25 24 28 28 C 1.38353 * 119.76570 * 359.65977 * 27 26 25 29 29 C 1.37739 * 119.97408 * 0.17216 * 28 27 26 30 30 H 1.08994 * 109.47541 * 60.00874 * 1 2 3 31 31 H 1.09000 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47777 * 299.99777 * 1 2 3 33 33 H 1.08991 * 109.47454 * 239.99961 * 2 1 3 34 34 H 1.08997 * 109.47043 * 119.99067 * 2 1 3 35 35 H 1.09002 * 109.47516 * 29.99730 * 4 3 2 36 36 H 1.08995 * 109.47388 * 150.00339 * 4 3 2 37 37 H 0.97001 * 119.99757 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47018 * 59.99558 * 15 13 3 39 39 H 1.09001 * 109.47071 * 299.99714 * 15 13 3 40 40 H 1.00898 * 111.00272 * 303.95118 * 16 15 13 41 41 H 1.09001 * 109.47045 * 60.00752 * 19 17 16 42 42 H 1.09009 * 109.46620 * 179.97438 * 19 17 16 43 43 H 1.08992 * 109.47411 * 300.00124 * 19 17 16 44 44 H 1.08995 * 110.75291 * 211.17188 * 22 20 17 45 45 H 1.09001 * 110.75024 * 334.34391 * 22 20 17 46 46 H 1.07998 * 119.87776 * 359.31627 * 25 24 23 47 47 H 1.08004 * 119.82976 * 180.31804 * 26 25 24 48 48 H 1.08002 * 120.12102 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.01311 * 180.14249 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 5.3912 2.1835 -3.2573 9 14 3.0126 3.4350 -3.9293 10 1 3.1160 4.8553 -3.5083 11 1 3.4056 3.3117 -5.3561 12 1 1.6130 2.9689 -3.7594 13 6 2.2428 2.0167 1.1672 14 8 2.6465 3.1603 1.1671 15 6 1.9921 1.3061 2.4723 16 7 2.3107 2.2061 3.5888 17 6 2.0772 1.5459 4.8802 18 1 1.2169 0.8817 4.7984 19 6 3.3140 0.7332 5.2684 20 6 1.8049 2.6035 5.9517 21 1 2.6242 3.3202 6.0068 22 6 0.4593 3.3211 5.6910 23 8 -0.4692 2.5495 6.4718 24 6 0.1879 1.9847 7.5217 25 6 -0.3128 1.4597 8.7108 26 6 0.5433 0.9120 9.6432 27 6 1.9065 0.8892 9.4118 28 6 2.4123 1.4126 8.2353 29 6 1.5588 1.9569 7.3012 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.5816 1.6876 -2.0285 36 1 2.0954 3.1410 -1.1385 37 1 5.7171 2.5733 -4.0836 38 1 2.6227 0.4189 2.5298 39 1 0.9443 1.0116 2.5302 40 1 3.2590 2.5442 3.5215 41 1 4.1743 1.3975 5.3503 42 1 3.1409 0.2437 6.2269 43 1 3.5080 -0.0202 4.5050 44 1 0.4968 4.3519 6.0432 45 1 0.2013 3.2853 4.6326 46 1 -1.3756 1.4783 8.9016 47 1 0.1473 0.5021 10.5607 48 1 2.5735 0.4598 10.1447 49 1 3.4761 1.3948 8.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185642484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:37 Heat of formation + Delta-G solvation = -56.127607 kcal Electronic energy + Delta-G solvation = -28678.955173 eV Core-core repulsion = 24798.638047 eV Total energy + Delta-G solvation = -3880.317126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.24996 -40.78488 -38.35295 -37.91799 -36.91237 -34.88781 -33.86426 -31.93647 -31.17584 -30.69719 -29.95627 -29.61265 -27.04272 -24.73039 -24.38986 -23.81145 -23.11676 -22.86233 -21.61791 -19.91306 -19.10695 -18.28729 -17.96455 -17.59944 -17.29530 -16.92781 -16.67884 -16.49405 -16.29047 -15.58676 -15.35991 -15.03336 -14.79452 -14.70402 -14.55311 -14.36662 -14.20445 -13.87644 -13.83291 -13.60549 -13.43983 -13.41259 -13.24788 -13.03369 -12.86419 -12.55843 -12.50058 -12.42103 -12.36530 -12.04721 -11.97398 -11.88817 -11.74516 -11.66812 -11.58221 -10.83598 -10.64581 -9.84176 -9.44934 -9.38621 -9.05428 -8.34642 -6.39109 0.36946 0.46182 1.31922 1.35939 1.44153 1.82369 2.20517 2.30288 2.39595 2.78210 2.99791 3.09466 3.52146 3.65452 3.69143 3.87860 3.99672 4.07252 4.16249 4.23208 4.29714 4.35173 4.35884 4.41001 4.44980 4.49149 4.59262 4.63512 4.69484 4.74010 4.78663 4.80985 4.90547 4.92002 4.98577 5.00571 5.01256 5.14620 5.21353 5.38031 5.44011 5.46719 5.53087 5.60071 5.64991 5.74203 5.89689 6.24024 6.24781 6.30020 6.61781 6.74264 7.21806 7.45523 8.82173 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.002390 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.046273 B =11712.479693 C =11917.244475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.602 5.602 4 C 0.226 3.774 5 C -0.533 4.533 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.240 1.240 13 C 0.497 3.503 14 O -0.581 6.581 15 C 0.059 3.941 16 N -0.678 5.678 17 C 0.106 3.894 18 H 0.079 0.921 19 C -0.181 4.181 20 C -0.059 4.059 21 H 0.099 0.901 22 C 0.059 3.941 23 O -0.325 6.325 24 C 0.081 3.919 25 C -0.155 4.155 26 C -0.084 4.084 27 C -0.151 4.151 28 C -0.074 4.074 29 C -0.173 4.173 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.017 0.983 37 H 0.268 0.732 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.347 0.653 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.134 0.866 47 H 0.157 0.843 48 H 0.152 0.848 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 -6.799 25.542 29.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.334 5.334 4 C 0.104 3.896 5 C -0.571 4.571 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.200 1.200 12 H -0.163 1.163 13 C 0.286 3.714 14 O -0.461 6.461 15 C -0.073 4.073 16 N -0.310 5.310 17 C -0.004 4.004 18 H 0.097 0.903 19 C -0.240 4.240 20 C -0.078 4.078 21 H 0.117 0.883 22 C -0.016 4.016 23 O -0.239 6.239 24 C 0.036 3.964 25 C -0.173 4.173 26 C -0.102 4.102 27 C -0.169 4.169 28 C -0.092 4.092 29 C -0.174 4.174 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.137 0.863 40 H 0.167 0.833 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.129 0.871 46 H 0.151 0.849 47 H 0.174 0.826 48 H 0.169 0.831 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.655 -5.882 25.285 28.880 hybrid contribution 1.130 0.176 -1.130 1.608 sum -11.525 -5.706 24.155 27.365 Atomic orbital electron populations 1.22157 0.94091 1.03584 1.02054 1.21753 0.95527 0.81207 1.03857 1.48055 1.64391 1.15120 1.05817 1.19265 0.94748 0.92971 0.82641 1.21543 0.97012 1.31947 1.06616 0.95271 1.25834 0.96691 0.97211 0.98988 1.70044 1.17339 1.46636 1.24471 0.85731 0.80454 0.79038 0.77826 1.20253 1.19994 1.16303 1.21196 0.77129 0.86682 0.86390 1.90639 1.47295 1.20278 1.87847 1.21809 1.03991 0.94238 0.87268 1.60152 1.32588 1.37734 1.00485 1.21373 0.98483 0.93388 0.87118 0.90280 1.22512 0.97912 1.00661 1.02893 1.21253 0.98868 0.97106 0.90603 0.88271 1.23889 0.86394 0.94449 0.96822 1.86804 1.36893 1.63594 1.36636 1.19976 0.91265 0.95919 0.89254 1.20567 1.01580 1.03964 0.91220 1.21230 0.93204 0.96852 0.98913 1.21409 0.95907 1.01804 0.97820 1.20639 0.99920 0.96056 0.92570 1.20779 0.93841 1.05816 0.96952 0.93498 0.88813 0.92119 0.90972 0.88759 0.93606 0.96538 0.92302 0.90827 0.86323 0.83320 0.91940 0.90468 0.92483 0.90183 0.87076 0.84856 0.82577 0.83057 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.24 71.98 0.74 -2.82 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -24.06 2.46 -826.17 -2.03 -26.09 16 4 C 0.23 11.07 4.23 85.63 0.36 11.43 16 5 C -0.53 -31.36 9.94 25.60 0.25 -31.10 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.64 5.47 84.66 0.46 1.10 16 8 N -0.94 -59.83 13.96 21.45 0.30 -59.53 16 9 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 13 C 0.50 19.68 7.71 87.66 0.68 20.36 16 14 O -0.58 -28.74 15.78 -3.03 -0.05 -28.78 16 15 C 0.06 1.58 4.52 85.56 0.39 1.96 16 16 N -0.68 -17.42 5.41 -495.58 -2.68 -20.10 16 17 C 0.11 2.12 2.14 44.91 0.10 2.21 16 18 H 0.08 1.64 7.80 -2.39 -0.02 1.62 16 19 C -0.18 -3.13 8.80 71.98 0.63 -2.49 16 20 C -0.06 -1.17 2.89 -10.65 -0.03 -1.20 16 21 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 22 C 0.06 1.28 7.48 72.56 0.54 1.82 16 23 O -0.32 -7.90 11.10 -95.07 -1.06 -8.96 16 24 C 0.08 1.74 7.04 22.68 0.16 1.90 16 25 C -0.15 -2.67 10.06 22.45 0.23 -2.44 16 26 C -0.08 -1.07 10.02 22.21 0.22 -0.85 16 27 C -0.15 -1.87 10.07 22.31 0.22 -1.65 16 28 C -0.07 -1.12 8.50 22.18 0.19 -0.93 16 29 C -0.17 -3.29 5.09 -19.53 -0.10 -3.39 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 33 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 34 H 0.09 2.16 6.44 -2.39 -0.02 2.14 16 35 H 0.05 2.08 7.13 -2.39 -0.02 2.06 16 36 H 0.02 0.87 6.85 -2.39 -0.02 0.86 16 37 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.07 1.74 6.70 -2.39 -0.02 1.72 16 39 H 0.12 2.64 7.10 -2.39 -0.02 2.62 16 40 H 0.35 9.89 8.17 -89.70 -0.73 9.16 16 41 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 42 H 0.08 1.18 5.93 -2.38 -0.01 1.17 16 43 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 45 H 0.11 2.59 7.58 -2.39 -0.02 2.57 16 46 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 48 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 49 H 0.14 1.64 7.75 -2.91 -0.02 1.62 16 Total: -1.00 -77.40 392.49 2.09 -75.32 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.16 Total: 24.14 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.55 Total: -2.74 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -4.41 Total: -105.72 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.10 Total: -37.74 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -77.40 2.09 -75.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185642484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.190 kcal (2) G-P(sol) polarization free energy of solvation -77.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds