Wall clock time and date at job start Tue Mar 31 2020 19:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46635 * 2 1 4 4 C 1.46494 * 119.99875 * 269.99509 * 3 2 1 5 5 C 1.50705 * 109.47223 * 270.00117 * 4 3 2 6 6 H 1.07994 * 119.99887 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00058 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99830 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00245 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47081 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47079 * 119.99760 * 9 7 5 12 12 H 1.48501 * 109.47376 * 239.99963 * 9 7 5 13 13 C 1.34780 * 119.99692 * 90.00056 * 3 2 1 14 14 O 1.21287 * 119.99605 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00402 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47342 * 180.02562 * 15 13 3 17 17 C 1.46890 * 111.00256 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.46960 * 34.99700 * 17 16 15 19 19 C 1.52999 * 109.47477 * 274.99682 * 17 16 15 20 20 C 1.53002 * 109.47376 * 154.99488 * 17 16 15 21 21 H 1.09002 * 110.83390 * 305.70250 * 20 17 16 22 22 C 1.54712 * 110.93872 * 69.42233 * 20 17 16 23 23 O 1.43762 * 102.79660 * 92.83493 * 22 20 17 24 24 C 1.36133 * 109.28770 * 27.54159 * 23 22 20 25 25 C 1.39290 * 129.87501 * 161.45730 * 24 23 22 26 26 C 1.37936 * 120.24055 * 179.54878 * 25 24 23 27 27 C 1.38279 * 120.35034 * 0.06604 * 26 25 24 28 28 C 1.38348 * 119.76910 * 0.15446 * 27 26 25 29 29 C 1.37682 * 119.99844 * 359.93352 * 28 27 26 30 30 H 1.09005 * 109.47513 * 300.00048 * 1 2 3 31 31 H 1.09003 * 109.47113 * 59.99917 * 1 2 3 32 32 H 1.09002 * 109.47274 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47362 * 239.99849 * 2 1 3 34 34 H 1.09001 * 109.47218 * 119.99314 * 2 1 3 35 35 H 1.08992 * 109.47531 * 30.00446 * 4 3 2 36 36 H 1.09005 * 109.47319 * 150.00732 * 4 3 2 37 37 H 0.97005 * 119.99706 * 180.02562 * 8 7 5 38 38 H 1.08999 * 109.47269 * 59.99570 * 15 13 3 39 39 H 1.09000 * 109.46333 * 299.99673 * 15 13 3 40 40 H 1.00901 * 111.00356 * 56.04080 * 16 15 13 41 41 H 1.09000 * 109.47103 * 300.00463 * 19 17 16 42 42 H 1.09006 * 109.46764 * 59.99645 * 19 17 16 43 43 H 1.08995 * 109.47809 * 180.02562 * 19 17 16 44 44 H 1.09004 * 110.74551 * 211.15254 * 22 20 17 45 45 H 1.08998 * 110.75154 * 334.31917 * 22 20 17 46 46 H 1.08003 * 119.88142 * 359.57535 * 25 24 23 47 47 H 1.08002 * 119.81607 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.11654 * 180.16874 * 27 26 25 49 49 H 1.08002 * 120.01187 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0960 7 6 4.1494 2.3906 -2.8773 8 7 3.3497 3.1274 -3.6170 9 14 5.9135 2.0966 -3.4169 10 1 6.6005 1.2396 -2.4174 11 1 5.9205 1.4184 -4.7379 12 1 6.6216 3.3975 -3.5245 13 6 2.2428 2.0166 1.1673 14 8 2.6474 3.1600 1.1672 15 6 1.9912 1.3064 2.4724 16 7 2.3088 2.2066 3.5889 17 6 2.0744 1.5467 4.8802 18 1 2.3254 0.4892 4.7987 19 6 0.6015 1.6928 5.2676 20 6 2.9507 2.1978 5.9522 21 1 3.9981 2.1955 5.6506 22 6 2.4679 3.6343 6.2636 23 8 1.5724 3.4363 7.3706 24 6 1.9482 2.3240 8.0596 25 6 1.6295 1.9264 9.3560 26 6 2.1194 0.7390 9.8587 27 6 2.9318 -0.0664 9.0818 28 6 3.2568 0.3235 7.7948 29 6 2.7706 1.5091 7.2912 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 1.5817 1.6878 -2.0283 36 1 2.0955 3.1411 -1.1384 37 1 3.6758 3.5179 -4.4429 38 1 2.6210 0.4187 2.5303 39 1 0.9431 1.0127 2.5298 40 1 1.7838 3.0656 3.5215 41 1 0.3504 2.7504 5.3491 42 1 -0.0228 1.2290 4.5039 43 1 0.4275 1.2037 6.2260 44 1 3.3055 4.2688 6.5533 45 1 1.9416 4.0587 5.4086 46 1 0.9961 2.5498 9.9696 47 1 1.8676 0.4371 10.8646 48 1 3.3111 -0.9967 9.4782 49 1 3.8907 -0.3027 7.1844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185642503.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:42 Heat of formation + Delta-G solvation = -35.635216 kcal Electronic energy + Delta-G solvation = -28650.850159 eV Core-core repulsion = 24771.421650 eV Total energy + Delta-G solvation = -3879.428509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63212 -39.16806 -37.73315 -36.74092 -35.23200 -33.05684 -32.63934 -30.58014 -30.12034 -29.95784 -28.68168 -27.57887 -25.63128 -24.33252 -23.04631 -22.90034 -22.37553 -21.90436 -20.12100 -18.46614 -17.41483 -16.88957 -16.76538 -16.50244 -16.24761 -15.85550 -15.76035 -15.00039 -14.66778 -14.46628 -14.28386 -14.13550 -13.72388 -13.52080 -13.34017 -13.17919 -12.94118 -12.72358 -12.63620 -12.55156 -12.22144 -12.02320 -11.89546 -11.81214 -11.66748 -11.58038 -11.20109 -11.06154 -10.98591 -10.88435 -10.75535 -10.72829 -10.53196 -10.11714 -9.60219 -9.18927 -8.90899 -8.45998 -8.42741 -8.25970 -7.64693 -6.03342 -4.07657 1.03388 1.13899 3.08798 3.30526 3.37440 3.39969 3.43962 3.46328 3.71500 4.15759 4.32353 4.41085 4.47628 4.66649 4.70651 4.78693 4.92651 5.06271 5.09213 5.12093 5.16126 5.24182 5.27694 5.31507 5.31697 5.37904 5.45226 5.57963 5.62438 5.67505 5.70902 5.76804 5.80437 5.84611 6.00823 6.02099 6.07454 6.20023 6.21483 6.24196 6.37314 6.45309 6.83164 6.98406 7.12115 7.35582 7.45481 7.56880 7.93643 8.25015 8.44062 8.92362 9.12438 9.57549 11.04769 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.002389 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.473972 B =11716.792372 C =12072.014318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.043 3.957 16 N -0.667 5.667 17 C 0.098 3.902 18 H 0.084 0.916 19 C -0.185 4.185 20 C -0.065 4.065 21 H 0.107 0.893 22 C 0.057 3.943 23 O -0.304 6.304 24 C 0.112 3.888 25 C -0.145 4.145 26 C -0.087 4.087 27 C -0.153 4.153 28 C -0.067 4.067 29 C -0.163 4.163 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.350 0.650 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.109 0.891 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.126 0.874 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -7.916 24.214 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.090 4.090 16 N -0.299 5.299 17 C -0.012 4.012 18 H 0.102 0.898 19 C -0.244 4.244 20 C -0.084 4.084 21 H 0.125 0.875 22 C -0.018 4.018 23 O -0.218 6.218 24 C 0.067 3.933 25 C -0.164 4.164 26 C -0.105 4.105 27 C -0.171 4.171 28 C -0.085 4.085 29 C -0.165 4.165 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.170 0.830 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.127 0.873 46 H 0.143 0.857 47 H 0.146 0.854 48 H 0.144 0.856 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.064 -7.161 24.009 25.561 hybrid contribution 0.090 -0.315 -0.543 0.634 sum -4.974 -7.475 23.466 25.125 Atomic orbital electron populations 1.22224 0.96903 1.01362 1.02224 1.21399 0.93388 0.84352 1.02628 1.48255 1.63971 1.13213 1.07727 1.19254 0.96260 0.93602 0.78103 1.21472 0.96916 1.31672 1.06151 0.92433 1.24941 0.97850 0.94963 0.96445 1.69946 1.35598 1.33567 1.14370 0.86447 0.84684 0.78059 0.78252 1.19797 1.21026 1.20882 1.20176 0.78858 0.87122 0.84863 1.90673 1.44924 1.17991 1.86947 1.21920 1.00027 0.96634 0.90388 1.60169 1.62928 1.07067 0.99741 1.21416 0.92960 0.98465 0.88343 0.89819 1.22568 0.96984 1.02835 1.01969 1.21386 1.02347 0.93265 0.91400 0.87513 1.23879 0.93083 0.96798 0.88048 1.86828 1.51201 1.42587 1.41143 1.19619 0.94294 0.87182 0.92235 1.20257 1.05009 0.98817 0.92309 1.20853 0.96602 0.93323 0.99707 1.21020 1.00892 1.00677 0.94521 1.20346 0.98326 0.94509 0.95360 1.20761 1.02854 0.97130 0.95711 0.93270 0.92007 0.92203 0.89928 0.91885 0.95096 0.93954 0.92816 0.88718 0.92893 0.82978 0.91732 0.92615 0.91948 0.90307 0.87267 0.85679 0.85393 0.85629 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.42 2.46 -175.06 -0.43 -12.85 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 5 C -0.52 -14.85 9.39 -34.44 -0.32 -15.18 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.50 10.23 7.71 -10.98 -0.08 10.15 16 14 O -0.53 -13.11 15.78 5.55 0.09 -13.03 16 15 C 0.04 0.61 4.52 -4.98 -0.02 0.59 16 16 N -0.67 -9.02 5.74 -108.00 -0.62 -9.64 16 17 C 0.10 1.06 2.42 -67.72 -0.16 0.89 16 18 H 0.08 0.87 7.80 -51.93 -0.41 0.47 16 19 C -0.18 -1.90 7.96 37.16 0.30 -1.60 16 20 C -0.06 -0.68 3.25 -90.40 -0.29 -0.97 16 21 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 22 C 0.06 0.58 6.71 38.06 0.26 0.84 16 23 O -0.30 -3.49 10.06 -20.16 -0.20 -3.70 16 24 C 0.11 1.21 6.12 -38.93 -0.24 0.98 16 25 C -0.15 -1.35 10.06 -39.30 -0.40 -1.74 16 26 C -0.09 -0.67 10.02 -39.68 -0.40 -1.07 16 27 C -0.15 -1.20 10.07 -39.53 -0.40 -1.59 16 28 C -0.07 -0.60 10.03 -39.74 -0.40 -1.00 16 29 C -0.16 -1.67 4.91 -104.09 -0.51 -2.18 16 30 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.09 1.26 7.31 -51.93 -0.38 0.88 16 39 H 0.05 0.66 6.48 -51.93 -0.34 0.32 16 40 H 0.35 4.89 7.31 -39.29 -0.29 4.61 16 41 H 0.06 0.69 6.29 -51.93 -0.33 0.36 16 42 H 0.05 0.56 7.45 -51.93 -0.39 0.17 16 43 H 0.06 0.66 6.82 -51.93 -0.35 0.30 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.11 1.10 6.32 -51.93 -0.33 0.77 16 46 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 48 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 49 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -33.44 392.06 -9.65 -43.09 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.66 Total: 3.25 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.44 Total: -4.05 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.31 Total: -48.44 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.12 Total: -16.72 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.44 -9.65 -43.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185642503.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.458 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds