Wall clock time and date at job start Tue Mar 31 2020 16:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47658 * 2 1 4 4 C 1.50700 * 109.47407 * 239.99630 * 2 1 3 5 5 O 1.21286 * 120.00202 * 270.03544 * 4 2 1 6 6 N 1.34778 * 119.99904 * 90.03336 * 4 2 1 7 7 C 1.46503 * 119.99868 * 355.41377 * 6 4 2 8 8 C 1.50697 * 109.46882 * 90.00378 * 7 6 4 9 9 H 1.08002 * 120.00416 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99509 * 179.72646 * 8 7 6 11 11 N 1.31516 * 119.99720 * 179.97438 * 10 8 7 12 12 Si 1.86791 * 120.00368 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47453 * 90.00118 * 12 10 8 14 14 H 1.48499 * 109.47301 * 210.00454 * 12 10 8 15 15 H 1.48507 * 109.47259 * 330.00256 * 12 10 8 16 16 C 1.39925 * 119.99863 * 175.41203 * 6 4 2 17 17 C 1.38878 * 120.07340 * 6.57735 * 16 6 4 18 18 C 1.38103 * 119.93043 * 179.76371 * 17 16 6 19 19 C 1.38288 * 120.07228 * 0.48305 * 18 17 16 20 20 C 1.38292 * 120.13945 * 359.77121 * 19 18 17 21 21 C 1.38109 * 120.06882 * 359.97438 * 20 19 18 22 22 N 1.46902 * 109.47318 * 119.99845 * 2 1 3 23 23 C 1.46843 * 111.00309 * 173.70853 * 22 2 1 24 24 C 1.53038 * 109.52375 * 185.83929 * 23 22 2 25 25 C 1.53116 * 109.27747 * 300.81574 * 24 23 22 26 26 C 1.53120 * 109.15808 * 57.65540 * 25 24 23 27 27 H 1.09001 * 109.53804 * 62.30965 * 26 25 24 28 28 O 1.42904 * 109.50041 * 182.40449 * 26 25 24 29 29 C 1.46854 * 110.99756 * 297.91618 * 22 2 1 30 30 H 1.09000 * 109.47472 * 185.35082 * 1 2 3 31 31 H 1.08999 * 109.47159 * 305.34978 * 1 2 3 32 32 H 1.08999 * 109.47128 * 65.35671 * 1 2 3 33 33 H 1.08996 * 109.47364 * 329.99889 * 7 6 4 34 34 H 1.09004 * 109.46760 * 209.99552 * 7 6 4 35 35 H 0.97001 * 120.00300 * 179.97438 * 11 10 8 36 36 H 1.07999 * 120.02795 * 359.97438 * 17 16 6 37 37 H 1.07994 * 119.96873 * 180.20333 * 18 17 16 38 38 H 1.07999 * 119.93575 * 179.74398 * 19 18 17 39 39 H 1.07997 * 119.96243 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.03702 * 179.97438 * 21 20 19 41 41 H 1.09007 * 109.45992 * 305.85016 * 23 22 2 42 42 H 1.09000 * 109.46786 * 65.81905 * 23 22 2 43 43 H 1.09006 * 109.50406 * 180.87680 * 24 23 22 44 44 H 1.09000 * 109.53413 * 60.77791 * 24 23 22 45 45 H 1.08999 * 109.52675 * 297.74971 * 25 24 23 46 46 H 1.09004 * 109.57464 * 177.59148 * 25 24 23 47 47 H 0.96703 * 113.99848 * 299.79826 * 28 26 25 48 48 H 1.09003 * 109.45832 * 294.17546 * 29 22 2 49 49 H 1.09000 * 109.46197 * 54.15105 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2339 -1.9061 -1.2005 6 7 2.2576 -0.0172 -2.3641 7 6 1.9196 1.4067 -2.4313 8 6 3.1063 2.2258 -1.9933 9 1 4.0206 1.7349 -1.6942 10 6 3.0263 3.6022 -1.9792 11 7 4.0617 4.3171 -1.5964 12 14 1.4475 4.4515 -2.5037 13 1 0.5683 4.6364 -1.3212 14 1 1.7700 5.7761 -3.0926 15 1 0.7488 3.6174 -3.5144 16 6 2.8144 -0.6576 -3.4767 17 6 3.0089 -2.0326 -3.4632 18 6 3.5541 -2.6622 -4.5649 19 6 3.9155 -1.9237 -5.6768 20 6 3.7280 -0.5536 -5.6913 21 6 3.1784 0.0813 -4.5948 22 7 2.0197 -0.6925 1.1995 23 6 3.4798 -0.8435 1.1607 24 6 3.9378 -1.6930 2.3484 25 6 3.5110 -1.0118 3.6516 26 6 1.9915 -0.8225 3.6454 27 1 1.5031 -1.7961 3.6052 28 8 1.5914 -0.1368 4.8336 29 6 1.5899 0.0017 2.4201 30 1 -0.3634 -1.0232 0.0958 31 1 -0.3633 0.5946 0.8382 32 1 -0.3633 0.4285 -0.9341 33 1 1.0745 1.6110 -1.7741 34 1 1.6552 1.6693 -3.4557 35 1 4.0056 5.2855 -1.5868 36 1 2.7309 -2.6093 -2.5934 37 1 3.7026 -3.7318 -4.5563 38 1 4.3455 -2.4177 -6.5355 39 1 4.0117 0.0204 -6.5610 40 1 3.0326 1.1514 -4.6066 41 1 3.7697 -1.3331 0.2309 42 1 3.9482 0.1392 1.2149 43 1 5.0232 -1.7920 2.3281 44 1 3.4811 -2.6808 2.2876 45 1 3.9987 -0.0403 3.7315 46 1 3.7972 -1.6339 4.4996 47 1 1.8148 -0.6030 5.6509 48 1 2.0672 0.9805 2.4684 49 1 0.5071 0.1260 2.4052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246052104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:04 Heat of formation + Delta-G solvation = -32.075104 kcal Electronic energy + Delta-G solvation = -30298.450396 eV Core-core repulsion = 26419.176265 eV Total energy + Delta-G solvation = -3879.274131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.63857 -39.12516 -37.82151 -36.14259 -35.43106 -33.62691 -32.70524 -30.47198 -30.26440 -29.64018 -29.15069 -27.86845 -24.94409 -23.52413 -23.03786 -22.42038 -21.83447 -20.90613 -19.75959 -18.87442 -17.33674 -17.21351 -16.97200 -16.58609 -16.11917 -15.43579 -15.07663 -14.51963 -14.43387 -14.38537 -14.07589 -13.90391 -13.71256 -13.39907 -13.34450 -12.95676 -12.89258 -12.76657 -12.56271 -12.33942 -12.02488 -11.97710 -11.66598 -11.62417 -11.42249 -11.23107 -11.14312 -10.90857 -10.81080 -10.68671 -10.50577 -10.43867 -10.32089 -9.85127 -9.79425 -9.31841 -8.87436 -8.66334 -8.39360 -8.06276 -7.26040 -6.34872 -4.39002 1.80395 1.96066 3.02251 3.07518 3.15326 3.17531 3.38173 3.87115 4.13944 4.42737 4.48277 4.76596 4.81693 4.90308 4.95373 5.10283 5.30432 5.36350 5.41903 5.47338 5.54717 5.56980 5.62684 5.65272 5.69457 5.83983 5.90183 5.94633 5.97821 6.00332 6.03211 6.05293 6.07547 6.14427 6.26837 6.30365 6.35492 6.42397 6.48121 6.62133 6.85433 6.95117 7.06281 7.15068 7.18306 7.22882 7.24828 7.59262 7.73692 7.88001 8.22237 8.63710 8.71461 9.21795 10.77101 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.005138 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.494060 B = 5448.593402 C = 7421.022133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.063 3.937 3 H 0.093 0.907 4 C 0.529 3.471 5 O -0.521 6.521 6 N -0.530 5.530 7 C 0.197 3.803 8 C -0.546 4.546 9 H 0.080 0.920 10 C 0.082 3.918 11 N -0.883 5.883 12 Si 0.865 3.135 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.262 1.262 16 C 0.169 3.831 17 C -0.180 4.180 18 C -0.108 4.108 19 C -0.160 4.160 20 C -0.104 4.104 21 C -0.145 4.145 22 N -0.512 5.512 23 C 0.045 3.955 24 C -0.108 4.108 25 C -0.153 4.153 26 C 0.111 3.889 27 H 0.064 0.936 28 O -0.569 6.569 29 C 0.060 3.940 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.269 0.731 36 H 0.180 0.820 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.377 0.623 48 H 0.045 0.955 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 -9.810 4.400 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 H 0.111 0.889 4 C 0.319 3.681 5 O -0.399 6.399 6 N -0.249 5.249 7 C 0.076 3.924 8 C -0.584 4.584 9 H 0.098 0.902 10 C -0.123 4.123 11 N -0.519 5.519 12 Si 0.691 3.309 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.187 1.187 16 C 0.074 3.926 17 C -0.199 4.199 18 C -0.127 4.127 19 C -0.179 4.179 20 C -0.123 4.123 21 C -0.166 4.166 22 N -0.239 5.239 23 C -0.083 4.083 24 C -0.146 4.146 25 C -0.191 4.191 26 C 0.052 3.948 27 H 0.082 0.918 28 O -0.374 6.374 29 C -0.068 4.068 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.196 0.804 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.224 0.776 48 H 0.063 0.937 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.515 -10.188 4.099 11.873 hybrid contribution 0.079 1.326 -0.025 1.329 sum -4.436 -8.862 4.074 10.715 Atomic orbital electron populations 1.21807 0.92343 1.03152 1.02564 1.21652 0.96941 0.98198 0.87965 0.88924 1.20420 0.76945 0.86768 0.84006 1.90248 1.51683 1.14884 1.83084 1.45679 1.56791 1.12123 1.10300 1.20115 0.97688 0.75721 0.98834 1.21216 0.99166 0.91105 1.46870 0.90234 1.24834 0.96232 0.97071 0.94171 1.69874 1.29732 1.06527 1.45778 0.87009 0.83985 0.80024 0.79870 1.19564 1.20545 1.18684 1.18056 0.95582 0.91745 0.87257 1.22769 1.01779 0.93731 1.01621 1.21033 0.98998 0.99223 0.93429 1.20996 1.03870 0.94338 0.98735 1.20858 0.99213 0.94467 0.97763 1.21075 1.01873 1.00700 0.92909 1.61631 1.12160 1.49979 1.00096 1.22253 0.86807 0.99282 0.99950 1.21457 1.00476 0.99549 0.93142 1.22336 0.96782 1.01566 0.98432 1.21702 0.93318 0.95062 0.84758 0.91819 1.86465 1.83782 1.51320 1.15847 1.21908 1.01481 0.95439 0.87950 0.91138 0.91352 0.91606 0.94359 0.93805 0.92118 0.80388 0.86725 0.87106 0.86462 0.84712 0.89439 0.94228 0.91314 0.90968 0.91290 0.91873 0.77610 0.93675 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.61 37.15 0.32 -1.77 16 2 C 0.06 1.12 1.63 -68.87 -0.11 1.01 16 3 H 0.09 1.85 6.24 -51.93 -0.32 1.53 16 4 C 0.53 10.40 5.60 -10.99 -0.06 10.34 16 5 O -0.52 -10.61 11.67 5.55 0.06 -10.55 16 6 N -0.53 -10.92 2.68 -114.73 -0.31 -11.23 16 7 C 0.20 4.22 3.16 -5.19 -0.02 4.21 16 8 C -0.55 -13.79 9.10 -34.44 -0.31 -14.10 16 9 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 10 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 11 N -0.88 -24.82 13.96 55.43 0.77 -24.05 16 12 Si 0.87 19.01 27.47 -169.99 -4.67 14.34 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 15 H -0.26 -5.44 6.53 56.52 0.37 -5.07 16 16 C 0.17 3.42 6.49 -83.69 -0.54 2.88 16 17 C -0.18 -3.39 9.05 -39.39 -0.36 -3.75 16 18 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 19 C -0.16 -2.47 10.04 -39.54 -0.40 -2.87 16 20 C -0.10 -1.72 10.04 -39.61 -0.40 -2.12 16 21 C -0.15 -2.79 9.15 -39.39 -0.36 -3.16 16 22 N -0.51 -8.35 4.29 -228.08 -0.98 -9.33 16 23 C 0.04 0.75 5.08 -3.84 -0.02 0.73 16 24 C -0.11 -1.43 6.09 -26.65 -0.16 -1.60 16 25 C -0.15 -1.81 5.63 -26.61 -0.15 -1.96 16 26 C 0.11 1.38 3.63 -26.65 -0.10 1.28 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 O -0.57 -6.74 13.32 -35.23 -0.47 -7.20 16 29 C 0.06 0.89 4.90 -3.83 -0.02 0.87 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.90 6.61 -51.93 -0.34 0.55 16 32 H 0.07 0.96 7.10 -51.93 -0.37 0.59 16 33 H 0.04 0.78 4.97 -51.93 -0.26 0.52 16 34 H 0.04 0.94 5.55 -51.93 -0.29 0.65 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.18 3.52 4.53 -56.24 -0.25 3.26 16 37 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.14 2.70 6.27 -52.48 -0.33 2.38 16 41 H 0.09 1.65 5.82 -51.92 -0.30 1.35 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.38 2.69 9.08 45.56 0.41 3.11 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.18 6.19 -51.93 -0.32 0.86 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -29.22 375.93 -9.72 -38.94 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -6.62 Total: 13.56 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.18 Total: -10.14 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.51 Total: -44.60 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.40 Total: -17.75 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.67 Total: 14.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.22 -9.72 -38.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246052104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.862 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds