Wall clock time and date at job start Tue Mar 31 2020 16:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47658 * 2 1 4 4 C 1.50700 * 109.47407 * 239.99630 * 2 1 3 5 5 O 1.21286 * 120.00202 * 270.03544 * 4 2 1 6 6 N 1.34778 * 119.99904 * 90.03336 * 4 2 1 7 7 C 1.46503 * 119.99868 * 355.41377 * 6 4 2 8 8 C 1.50697 * 109.46882 * 90.00378 * 7 6 4 9 9 H 1.08002 * 120.00416 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99509 * 179.72646 * 8 7 6 11 11 N 1.31516 * 119.99720 * 179.97438 * 10 8 7 12 12 Si 1.86791 * 120.00368 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47453 * 90.00118 * 12 10 8 14 14 H 1.48499 * 109.47301 * 210.00454 * 12 10 8 15 15 H 1.48507 * 109.47259 * 330.00256 * 12 10 8 16 16 C 1.39925 * 119.99863 * 175.41203 * 6 4 2 17 17 C 1.38878 * 120.07340 * 6.57735 * 16 6 4 18 18 C 1.38103 * 119.93043 * 179.76371 * 17 16 6 19 19 C 1.38288 * 120.07228 * 0.48305 * 18 17 16 20 20 C 1.38292 * 120.13945 * 359.77121 * 19 18 17 21 21 C 1.38109 * 120.06882 * 359.97438 * 20 19 18 22 22 N 1.46902 * 109.47318 * 119.99845 * 2 1 3 23 23 C 1.46843 * 111.00309 * 173.70853 * 22 2 1 24 24 C 1.53038 * 109.52375 * 185.83929 * 23 22 2 25 25 C 1.53116 * 109.27747 * 300.81574 * 24 23 22 26 26 C 1.53120 * 109.15808 * 57.65540 * 25 24 23 27 27 H 1.09001 * 109.53804 * 62.30965 * 26 25 24 28 28 O 1.42904 * 109.50041 * 182.40449 * 26 25 24 29 29 C 1.46854 * 110.99756 * 297.91618 * 22 2 1 30 30 H 1.09000 * 109.47472 * 185.35082 * 1 2 3 31 31 H 1.08999 * 109.47159 * 305.34978 * 1 2 3 32 32 H 1.08999 * 109.47128 * 65.35671 * 1 2 3 33 33 H 1.08996 * 109.47364 * 329.99889 * 7 6 4 34 34 H 1.09004 * 109.46760 * 209.99552 * 7 6 4 35 35 H 0.97001 * 120.00300 * 179.97438 * 11 10 8 36 36 H 1.07999 * 120.02795 * 359.97438 * 17 16 6 37 37 H 1.07994 * 119.96873 * 180.20333 * 18 17 16 38 38 H 1.07999 * 119.93575 * 179.74398 * 19 18 17 39 39 H 1.07997 * 119.96243 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.03702 * 179.97438 * 21 20 19 41 41 H 1.09007 * 109.45992 * 305.85016 * 23 22 2 42 42 H 1.09000 * 109.46786 * 65.81905 * 23 22 2 43 43 H 1.09006 * 109.50406 * 180.87680 * 24 23 22 44 44 H 1.09000 * 109.53413 * 60.77791 * 24 23 22 45 45 H 1.08999 * 109.52675 * 297.74971 * 25 24 23 46 46 H 1.09004 * 109.57464 * 177.59148 * 25 24 23 47 47 H 0.96703 * 113.99848 * 299.79826 * 28 26 25 48 48 H 1.09003 * 109.45832 * 294.17546 * 29 22 2 49 49 H 1.09000 * 109.46197 * 54.15105 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2339 -1.9061 -1.2005 6 7 2.2576 -0.0172 -2.3641 7 6 1.9196 1.4067 -2.4313 8 6 3.1063 2.2258 -1.9933 9 1 4.0206 1.7349 -1.6942 10 6 3.0263 3.6022 -1.9792 11 7 4.0617 4.3171 -1.5964 12 14 1.4475 4.4515 -2.5037 13 1 0.5683 4.6364 -1.3212 14 1 1.7700 5.7761 -3.0926 15 1 0.7488 3.6174 -3.5144 16 6 2.8144 -0.6576 -3.4767 17 6 3.0089 -2.0326 -3.4632 18 6 3.5541 -2.6622 -4.5649 19 6 3.9155 -1.9237 -5.6768 20 6 3.7280 -0.5536 -5.6913 21 6 3.1784 0.0813 -4.5948 22 7 2.0197 -0.6925 1.1995 23 6 3.4798 -0.8435 1.1607 24 6 3.9378 -1.6930 2.3484 25 6 3.5110 -1.0118 3.6516 26 6 1.9915 -0.8225 3.6454 27 1 1.5031 -1.7961 3.6052 28 8 1.5914 -0.1368 4.8336 29 6 1.5899 0.0017 2.4201 30 1 -0.3634 -1.0232 0.0958 31 1 -0.3633 0.5946 0.8382 32 1 -0.3633 0.4285 -0.9341 33 1 1.0745 1.6110 -1.7741 34 1 1.6552 1.6693 -3.4557 35 1 4.0056 5.2855 -1.5868 36 1 2.7309 -2.6093 -2.5934 37 1 3.7026 -3.7318 -4.5563 38 1 4.3455 -2.4177 -6.5355 39 1 4.0117 0.0204 -6.5610 40 1 3.0326 1.1514 -4.6066 41 1 3.7697 -1.3331 0.2309 42 1 3.9482 0.1392 1.2149 43 1 5.0232 -1.7920 2.3281 44 1 3.4811 -2.6808 2.2876 45 1 3.9987 -0.0403 3.7315 46 1 3.7972 -1.6339 4.4996 47 1 1.8148 -0.6030 5.6509 48 1 2.0672 0.9805 2.4684 49 1 0.5071 0.1260 2.4052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246052104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:02 Heat of formation + Delta-G solvation = -52.191145 kcal Electronic energy + Delta-G solvation = -30299.322693 eV Core-core repulsion = 26419.176265 eV Total energy + Delta-G solvation = -3880.146428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.13127 -40.36803 -39.14498 -37.26877 -37.05864 -34.81604 -34.66928 -31.87520 -31.60179 -30.80609 -30.61080 -29.56153 -26.21667 -25.02546 -24.61412 -23.66138 -23.22567 -22.30381 -20.92621 -20.35288 -19.21365 -18.63759 -18.16481 -18.11986 -17.39541 -16.83000 -16.60645 -16.14228 -15.81067 -15.53882 -15.42035 -15.18789 -15.06848 -14.85327 -14.65932 -14.45982 -14.27149 -14.12337 -13.99328 -13.72563 -13.54046 -13.32423 -13.18165 -12.87545 -12.73760 -12.66952 -12.54858 -12.37912 -12.25674 -12.01970 -11.91708 -11.81518 -11.75937 -11.38346 -10.95961 -10.88215 -10.77782 -10.15957 -9.78102 -9.47244 -8.76933 -8.38518 -6.47880 0.39476 0.57001 1.33353 1.35024 1.43961 1.52406 1.91009 2.26112 2.59985 2.94090 3.02416 3.28799 3.51002 3.69173 3.83823 3.96285 4.04048 4.11017 4.17795 4.19677 4.21341 4.33593 4.35784 4.43756 4.45901 4.52645 4.58469 4.64447 4.65465 4.67332 4.72603 4.81510 4.85109 4.87524 4.89678 4.98648 5.05694 5.13556 5.23851 5.28449 5.32505 5.40404 5.59343 5.68370 5.75160 5.80920 5.94520 6.03910 6.30146 6.44138 6.56777 6.90650 7.08089 7.18216 8.77469 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.005138 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.494060 B = 5448.593402 C = 7421.022133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.063 3.937 3 H 0.062 0.938 4 C 0.524 3.476 5 O -0.531 6.531 6 N -0.538 5.538 7 C 0.208 3.792 8 C -0.538 4.538 9 H 0.025 0.975 10 C 0.027 3.973 11 N -0.935 5.935 12 Si 0.932 3.068 13 H -0.257 1.257 14 H -0.281 1.281 15 H -0.238 1.238 16 C 0.138 3.862 17 C -0.196 4.196 18 C -0.105 4.105 19 C -0.149 4.149 20 C -0.103 4.103 21 C -0.168 4.168 22 N -0.505 5.505 23 C 0.047 3.953 24 C -0.101 4.101 25 C -0.147 4.147 26 C 0.119 3.881 27 H 0.078 0.922 28 O -0.581 6.581 29 C 0.056 3.944 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.270 0.730 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.060 0.940 42 H 0.008 0.992 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.098 0.902 47 H 0.399 0.601 48 H 0.020 0.980 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.922 -11.451 4.052 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 H 0.080 0.920 4 C 0.315 3.685 5 O -0.410 6.410 6 N -0.258 5.258 7 C 0.087 3.913 8 C -0.576 4.576 9 H 0.043 0.957 10 C -0.173 4.173 11 N -0.574 5.574 12 Si 0.754 3.246 13 H -0.181 1.181 14 H -0.206 1.206 15 H -0.161 1.161 16 C 0.043 3.957 17 C -0.215 4.215 18 C -0.123 4.123 19 C -0.168 4.168 20 C -0.121 4.121 21 C -0.189 4.189 22 N -0.231 5.231 23 C -0.081 4.081 24 C -0.139 4.139 25 C -0.185 4.185 26 C 0.060 3.940 27 H 0.096 0.904 28 O -0.389 6.389 29 C -0.071 4.071 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.184 0.816 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.116 0.884 47 H 0.250 0.750 48 H 0.039 0.961 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.219 -11.868 3.762 13.917 hybrid contribution 0.758 1.744 0.057 1.902 sum -5.461 -10.125 3.819 12.121 Atomic orbital electron populations 1.21818 0.89726 1.04113 1.03634 1.21664 0.98977 0.96223 0.87934 0.92020 1.20770 0.76658 0.86836 0.84258 1.90237 1.52203 1.15261 1.83310 1.45689 1.57334 1.11662 1.11084 1.19904 0.96265 0.75995 0.99139 1.21213 0.98570 0.91593 1.46232 0.95683 1.25720 0.99940 0.97665 0.94013 1.70036 1.32552 1.06902 1.47909 0.85938 0.79551 0.78707 0.80421 1.18149 1.20647 1.16118 1.18391 0.97092 0.92654 0.87583 1.22753 1.03061 0.93175 1.02534 1.21414 0.97414 1.00872 0.92592 1.21435 1.02143 0.93766 0.99468 1.21231 0.97827 0.95488 0.97557 1.21120 1.03659 1.00045 0.94050 1.61746 1.11500 1.49579 1.00288 1.22195 0.87292 0.98025 1.00585 1.21430 1.01121 0.99138 0.92238 1.22302 0.96348 1.01205 0.98636 1.21550 0.93590 0.94835 0.84071 0.90409 1.86418 1.83846 1.52044 1.16623 1.22019 1.01912 0.94727 0.88484 0.90332 0.89429 0.91217 0.92643 0.93092 0.92047 0.81564 0.83648 0.83074 0.83710 0.86435 0.92197 0.97377 0.90372 0.90068 0.92913 0.88380 0.75019 0.96147 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.61 71.98 0.62 -3.30 16 2 C 0.06 2.33 1.63 44.17 0.07 2.40 16 3 H 0.06 2.64 6.24 -2.39 -0.01 2.63 16 4 C 0.52 21.56 5.60 87.66 0.49 22.05 16 5 O -0.53 -22.48 11.67 -3.05 -0.04 -22.52 16 6 N -0.54 -23.22 2.68 -635.29 -1.70 -24.92 16 7 C 0.21 9.21 3.16 85.63 0.27 9.48 16 8 C -0.54 -28.87 9.10 25.60 0.23 -28.64 16 9 H 0.02 1.58 8.06 -2.91 -0.02 1.55 16 10 C 0.03 1.44 5.47 84.65 0.46 1.90 16 11 N -0.94 -55.32 13.96 21.45 0.30 -55.02 16 12 Si 0.93 39.40 27.47 68.60 1.88 41.29 16 13 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 14 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 15 H -0.24 -9.07 6.53 99.48 0.65 -8.42 16 16 C 0.14 5.74 6.49 38.16 0.25 5.99 16 17 C -0.20 -7.46 9.05 22.39 0.20 -7.26 16 18 C -0.10 -3.20 10.04 22.25 0.22 -2.97 16 19 C -0.15 -4.16 10.04 22.29 0.22 -3.94 16 20 C -0.10 -3.23 10.04 22.25 0.22 -3.00 16 21 C -0.17 -6.59 9.15 22.39 0.20 -6.38 16 22 N -0.50 -16.94 4.29 -875.50 -3.76 -20.70 16 23 C 0.05 1.68 5.08 86.33 0.44 2.12 16 24 C -0.10 -2.67 6.09 30.65 0.19 -2.48 16 25 C -0.15 -3.29 5.63 30.67 0.17 -3.12 16 26 C 0.12 2.77 3.63 30.65 0.11 2.88 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 O -0.58 -12.51 13.32 -148.98 -1.98 -14.50 16 29 C 0.06 1.67 4.90 86.32 0.42 2.09 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.09 2.18 6.61 -2.39 -0.02 2.16 16 32 H 0.07 1.95 7.10 -2.39 -0.02 1.94 16 33 H 0.06 2.26 4.97 -2.39 -0.01 2.25 16 34 H 0.05 2.19 5.55 -2.39 -0.01 2.18 16 35 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.17 6.75 4.53 -62.27 -0.28 6.46 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 39 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 40 H 0.12 4.90 6.27 -2.91 -0.02 4.89 16 41 H 0.06 2.44 5.82 -2.38 -0.01 2.43 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.40 4.52 9.08 -74.06 -0.67 3.85 16 48 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.10 2.59 6.19 -2.39 -0.01 2.58 16 Total: -1.00 -68.57 375.93 -0.52 -69.09 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.03 Total: 39.46 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.81 Total: -12.18 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -5.16 Total: -100.64 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -2.02 Total: -37.01 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.88 Total: 41.29 kcal Total: -68.57 -0.52 -69.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246052104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.896 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds