Wall clock time and date at job start Tue Mar 31 2020 18:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47115 * 2 1 4 4 C 1.46499 * 120.00071 * 270.00143 * 3 2 1 5 5 C 1.50705 * 109.46823 * 269.99891 * 4 3 2 6 6 H 1.07999 * 119.99901 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99759 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00458 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00011 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47236 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47574 * 119.99663 * 9 7 5 12 12 H 1.48503 * 109.47553 * 239.99948 * 9 7 5 13 13 C 1.34778 * 120.00152 * 89.99465 * 3 2 1 14 14 O 1.21280 * 120.00165 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99786 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47094 * 179.97438 * 15 13 3 17 17 C 1.46700 * 111.00114 * 69.34199 * 16 15 13 18 18 C 1.51710 * 108.78505 * 209.66074 * 17 16 15 19 19 C 1.37912 * 120.24646 * 112.30104 * 18 17 16 20 20 C 1.38413 * 119.64227 * 179.01308 * 19 18 17 21 21 C 1.38278 * 120.06281 * 359.92478 * 20 19 18 22 22 C 1.38170 * 120.26383 * 0.42900 * 21 20 19 23 23 C 1.38203 * 119.18668 * 292.09881 * 18 17 16 24 24 O 1.36017 * 120.14431 * 2.26627 * 23 18 17 25 25 C 1.43334 * 115.31734 * 69.07121 * 24 23 18 26 26 C 1.46014 * 110.99948 * 195.40441 * 16 15 13 27 27 H 1.08998 * 108.65331 * 286.95657 * 26 16 15 28 28 C 1.52998 * 108.65038 * 44.81455 * 26 16 15 29 29 H 1.09008 * 109.47336 * 60.00083 * 1 2 3 30 30 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47267 * 300.00531 * 1 2 3 32 32 H 1.08998 * 109.47162 * 240.00235 * 2 1 3 33 33 H 1.08996 * 109.46964 * 120.00089 * 2 1 3 34 34 H 1.08993 * 109.47159 * 29.99875 * 4 3 2 35 35 H 1.09004 * 109.47535 * 150.00195 * 4 3 2 36 36 H 0.97003 * 120.00617 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47058 * 299.99127 * 15 13 3 38 38 H 1.08991 * 109.47333 * 59.99188 * 15 13 3 39 39 H 1.08994 * 109.58489 * 329.45258 * 17 16 15 40 40 H 1.09002 * 109.58316 * 89.73010 * 17 16 15 41 41 H 1.08000 * 120.17780 * 359.01587 * 19 18 17 42 42 H 1.08000 * 119.96290 * 179.90339 * 20 19 18 43 43 H 1.08002 * 119.87304 * 180.45432 * 21 20 19 44 44 H 1.07997 * 120.15360 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.23297 * 34.96941 * 25 24 23 46 46 H 1.09001 * 109.22791 * 154.38969 * 25 24 23 47 47 H 1.09003 * 109.47326 * 51.16322 * 28 26 16 48 48 H 1.09006 * 109.46807 * 171.16591 * 28 26 16 49 49 H 1.09007 * 109.47342 * 291.16021 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8773 8 7 3.3494 3.1266 -3.6175 9 14 5.9138 2.0976 -3.4162 10 1 6.6015 1.2424 -2.4157 11 1 5.9219 1.4190 -4.7371 12 1 6.6211 3.3989 -3.5240 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 7 2.3107 2.2059 3.5889 17 6 1.3388 3.3014 3.6750 18 6 2.0273 4.5204 4.2594 19 6 2.2364 5.6398 3.4815 20 6 2.8473 6.7526 4.0333 21 6 3.2434 6.7398 5.3580 22 6 3.0402 5.6154 6.1348 23 6 2.4368 4.4952 5.5792 24 8 2.2641 3.3720 6.3266 25 6 3.0830 2.2561 5.9543 26 6 2.4329 1.4639 4.8405 27 1 1.4374 1.1597 5.1640 28 6 3.2653 0.2060 4.5843 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 3.6755 3.5171 -4.4434 37 1 0.9442 1.0116 2.5302 38 1 2.6225 0.4188 2.5299 39 1 0.9636 3.5361 2.6789 40 1 0.5096 3.0045 4.3172 41 1 1.9251 5.6482 2.4474 42 1 3.0151 7.6314 3.4284 43 1 3.7132 7.6124 5.7875 44 1 3.3499 5.6075 7.1694 45 1 4.0536 2.6197 5.6172 46 1 3.2229 1.6089 6.8201 47 1 4.1918 0.4800 4.0795 48 1 3.4978 -0.2755 5.5342 49 1 2.6995 -0.4826 3.9567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272944274.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:48 Heat of formation + Delta-G solvation = -25.654228 kcal Electronic energy + Delta-G solvation = -29958.521118 eV Core-core repulsion = 26079.525418 eV Total energy + Delta-G solvation = -3878.995701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.63437 -39.13910 -37.68956 -36.65818 -35.17247 -32.84660 -32.77910 -31.07491 -30.09714 -29.66901 -28.40857 -27.00257 -25.52253 -24.75075 -23.02745 -22.69815 -22.10099 -21.12521 -20.24857 -18.30714 -17.88051 -16.99795 -16.36562 -16.18190 -15.88522 -15.50834 -15.36427 -15.30008 -14.57322 -14.44330 -14.09609 -13.97211 -13.81489 -13.39795 -13.29614 -13.13412 -12.68858 -12.61345 -12.51639 -12.10348 -12.01667 -11.83010 -11.80341 -11.60661 -11.53984 -11.25032 -11.12609 -10.93747 -10.87740 -10.85626 -10.68428 -10.51273 -10.10892 -9.97626 -9.58677 -8.88221 -8.67891 -8.42435 -8.39373 -8.15308 -7.61517 -6.03032 -4.07210 1.33465 1.50329 3.30298 3.37637 3.39720 3.43673 3.49483 3.58237 4.02573 4.30585 4.47132 4.71080 4.79783 4.86171 4.97835 5.04387 5.09935 5.17914 5.25137 5.30940 5.33218 5.36533 5.40850 5.46046 5.49433 5.54059 5.61648 5.65656 5.70674 5.75632 5.76158 5.82461 5.91757 6.00906 6.05923 6.14508 6.21723 6.45040 6.45490 6.61786 6.74257 6.86729 6.94053 7.11261 7.17919 7.46303 7.53684 7.59048 7.94211 8.25791 8.46857 8.93500 9.17149 9.58189 11.04971 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.003817 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.428391 B = 7334.084108 C = 8470.402559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.519 6.519 15 C 0.033 3.967 16 N -0.521 5.521 17 C 0.106 3.894 18 C -0.089 4.089 19 C -0.073 4.073 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.140 4.140 23 C 0.096 3.904 24 O -0.331 6.331 25 C 0.074 3.926 26 C 0.058 3.942 27 H 0.045 0.955 28 C -0.156 4.156 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -3.431 18.614 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.130 3.870 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.395 6.395 15 C -0.097 4.097 16 N -0.246 5.246 17 C -0.021 4.021 18 C -0.090 4.090 19 C -0.091 4.091 20 C -0.148 4.148 21 C -0.130 4.130 22 C -0.158 4.158 23 C 0.052 3.948 24 O -0.247 6.247 25 C -0.002 4.002 26 C -0.051 4.051 27 H 0.063 0.937 28 C -0.213 4.213 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.150 0.850 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.086 0.914 46 H 0.119 0.881 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.204 -2.558 18.493 19.137 hybrid contribution 0.374 -0.646 -0.519 0.909 sum -3.830 -3.204 17.974 18.655 Atomic orbital electron populations 1.22226 0.96943 1.01335 1.02216 1.21379 0.93365 0.84478 1.02487 1.48260 1.64260 1.13159 1.07692 1.19224 0.96158 0.93549 0.78092 1.21476 0.96943 1.31641 1.06095 0.92483 1.24918 0.97737 0.94966 0.96442 1.69938 1.35560 1.33629 1.14354 0.86473 0.84817 0.78053 0.78250 1.19839 1.21031 1.20909 1.20133 0.79013 0.87246 0.84637 1.90665 1.44293 1.17720 1.86773 1.22234 1.00546 0.96491 0.90473 1.60490 1.50549 1.10990 1.02529 1.21124 0.91366 0.88516 1.01089 1.20108 0.99952 0.96099 0.92886 1.21049 0.96689 0.91754 0.99646 1.21221 0.99612 0.98716 0.95260 1.20955 1.00184 0.97665 0.94160 1.21103 1.00343 0.93893 1.00501 1.18496 0.98598 0.87543 0.90138 1.86273 1.62763 1.19991 1.55713 1.22692 0.93817 0.86836 0.96806 1.21671 0.99185 0.93932 0.90290 0.93728 1.22039 1.01105 0.95958 1.02227 0.92000 0.92236 0.93294 0.89971 0.92072 0.95208 0.93996 0.92843 0.92619 0.87575 0.89148 0.93608 0.84957 0.85882 0.85999 0.85830 0.91436 0.88060 0.90938 0.91728 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.29 2.46 -175.06 -0.43 -12.72 16 4 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 5 C -0.52 -14.72 9.39 -34.44 -0.32 -15.04 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.50 10.16 7.11 -10.98 -0.08 10.09 16 14 O -0.52 -12.56 14.59 5.56 0.08 -12.48 16 15 C 0.03 0.49 3.57 -4.97 -0.02 0.47 16 16 N -0.52 -7.85 3.92 -230.78 -0.90 -8.75 16 17 C 0.11 1.64 4.59 -4.59 -0.02 1.62 16 18 C -0.09 -1.41 5.47 -104.26 -0.57 -1.98 16 19 C -0.07 -1.15 9.70 -39.64 -0.38 -1.54 16 20 C -0.13 -1.77 10.05 -39.50 -0.40 -2.17 16 21 C -0.11 -1.37 10.03 -39.59 -0.40 -1.77 16 22 C -0.14 -1.82 10.01 -39.38 -0.39 -2.21 16 23 C 0.10 1.41 5.63 -39.37 -0.22 1.19 16 24 O -0.33 -4.56 10.04 -19.79 -0.20 -4.76 16 25 C 0.07 0.85 5.86 36.33 0.21 1.06 16 26 C 0.06 0.68 2.38 -69.02 -0.16 0.52 16 27 H 0.04 0.51 7.89 -51.93 -0.41 0.10 16 28 C -0.16 -1.51 8.01 37.16 0.30 -1.21 16 29 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 34 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.06 0.72 7.13 -51.93 -0.37 0.35 16 38 H 0.11 1.41 4.60 -51.93 -0.24 1.17 16 39 H 0.09 1.55 6.15 -51.93 -0.32 1.23 16 40 H 0.05 0.66 7.76 -51.93 -0.40 0.25 16 41 H 0.13 2.22 7.99 -52.49 -0.42 1.80 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.07 0.85 7.91 -51.93 -0.41 0.44 16 46 H 0.10 0.86 7.99 -51.93 -0.41 0.45 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.48 7.95 -51.93 -0.41 0.06 16 49 H 0.06 0.57 6.53 -51.92 -0.34 0.23 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -33.36 387.56 -9.87 -43.23 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.75 Total: 1.64 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.23 Total: -3.12 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.60 Total: -47.26 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.12 Total: -17.24 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.36 -9.87 -43.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272944274.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.577 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds