Wall clock time and date at job start Tue Mar 31 2020 18:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47115 * 2 1 4 4 C 1.46499 * 120.00071 * 270.00143 * 3 2 1 5 5 C 1.50705 * 109.46823 * 269.99891 * 4 3 2 6 6 H 1.07999 * 119.99901 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99759 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00458 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00011 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47236 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47574 * 119.99663 * 9 7 5 12 12 H 1.48503 * 109.47553 * 239.99948 * 9 7 5 13 13 C 1.34778 * 120.00152 * 89.99465 * 3 2 1 14 14 O 1.21280 * 120.00165 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99786 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47094 * 179.97438 * 15 13 3 17 17 C 1.46700 * 111.00114 * 69.34199 * 16 15 13 18 18 C 1.51710 * 108.78505 * 209.66074 * 17 16 15 19 19 C 1.37912 * 120.24646 * 112.30104 * 18 17 16 20 20 C 1.38413 * 119.64227 * 179.01308 * 19 18 17 21 21 C 1.38278 * 120.06281 * 359.92478 * 20 19 18 22 22 C 1.38170 * 120.26383 * 0.42900 * 21 20 19 23 23 C 1.38203 * 119.18668 * 292.09881 * 18 17 16 24 24 O 1.36017 * 120.14431 * 2.26627 * 23 18 17 25 25 C 1.43334 * 115.31734 * 69.07121 * 24 23 18 26 26 C 1.46014 * 110.99948 * 195.40441 * 16 15 13 27 27 H 1.08998 * 108.65331 * 286.95657 * 26 16 15 28 28 C 1.52998 * 108.65038 * 44.81455 * 26 16 15 29 29 H 1.09008 * 109.47336 * 60.00083 * 1 2 3 30 30 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47267 * 300.00531 * 1 2 3 32 32 H 1.08998 * 109.47162 * 240.00235 * 2 1 3 33 33 H 1.08996 * 109.46964 * 120.00089 * 2 1 3 34 34 H 1.08993 * 109.47159 * 29.99875 * 4 3 2 35 35 H 1.09004 * 109.47535 * 150.00195 * 4 3 2 36 36 H 0.97003 * 120.00617 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47058 * 299.99127 * 15 13 3 38 38 H 1.08991 * 109.47333 * 59.99188 * 15 13 3 39 39 H 1.08994 * 109.58489 * 329.45258 * 17 16 15 40 40 H 1.09002 * 109.58316 * 89.73010 * 17 16 15 41 41 H 1.08000 * 120.17780 * 359.01587 * 19 18 17 42 42 H 1.08000 * 119.96290 * 179.90339 * 20 19 18 43 43 H 1.08002 * 119.87304 * 180.45432 * 21 20 19 44 44 H 1.07997 * 120.15360 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.23297 * 34.96941 * 25 24 23 46 46 H 1.09001 * 109.22791 * 154.38969 * 25 24 23 47 47 H 1.09003 * 109.47326 * 51.16322 * 28 26 16 48 48 H 1.09006 * 109.46807 * 171.16591 * 28 26 16 49 49 H 1.09007 * 109.47342 * 291.16021 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8773 8 7 3.3494 3.1266 -3.6175 9 14 5.9138 2.0976 -3.4162 10 1 6.6015 1.2424 -2.4157 11 1 5.9219 1.4190 -4.7371 12 1 6.6211 3.3989 -3.5240 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 7 2.3107 2.2059 3.5889 17 6 1.3388 3.3014 3.6750 18 6 2.0273 4.5204 4.2594 19 6 2.2364 5.6398 3.4815 20 6 2.8473 6.7526 4.0333 21 6 3.2434 6.7398 5.3580 22 6 3.0402 5.6154 6.1348 23 6 2.4368 4.4952 5.5792 24 8 2.2641 3.3720 6.3266 25 6 3.0830 2.2561 5.9543 26 6 2.4329 1.4639 4.8405 27 1 1.4374 1.1597 5.1640 28 6 3.2653 0.2060 4.5843 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 3.6755 3.5171 -4.4434 37 1 0.9442 1.0116 2.5302 38 1 2.6225 0.4188 2.5299 39 1 0.9636 3.5361 2.6789 40 1 0.5096 3.0045 4.3172 41 1 1.9251 5.6482 2.4474 42 1 3.0151 7.6314 3.4284 43 1 3.7132 7.6124 5.7875 44 1 3.3499 5.6075 7.1694 45 1 4.0536 2.6197 5.6172 46 1 3.2229 1.6089 6.8201 47 1 4.1918 0.4800 4.0795 48 1 3.4978 -0.2755 5.5342 49 1 2.6995 -0.4826 3.9567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272944274.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:47 Heat of formation + Delta-G solvation = -46.844884 kcal Electronic energy + Delta-G solvation = -29959.440014 eV Core-core repulsion = 26079.525418 eV Total energy + Delta-G solvation = -3879.914597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.73006 -40.60042 -38.77854 -37.80297 -36.77993 -34.90279 -33.82117 -32.23884 -31.57794 -30.77173 -29.72041 -28.53748 -26.74656 -25.89827 -24.70603 -24.01571 -23.37264 -22.18605 -21.28808 -19.82297 -18.92386 -18.63401 -18.16296 -17.38396 -17.21459 -16.90362 -16.42890 -16.35890 -16.30919 -15.85807 -15.37249 -15.19881 -14.91855 -14.68005 -14.54979 -14.30299 -14.21867 -13.80738 -13.61892 -13.57164 -13.29771 -13.13944 -13.03134 -12.85027 -12.73990 -12.67854 -12.51352 -12.49669 -12.32896 -12.16826 -11.98634 -11.85161 -11.75161 -11.66344 -10.96979 -10.64539 -10.47062 -9.79320 -9.46976 -9.39772 -9.25312 -8.21603 -6.36010 0.26559 0.40928 1.34863 1.37663 1.49104 1.91976 2.20601 2.38763 2.47892 2.81228 3.07788 3.17967 3.65585 3.79032 3.82607 3.89362 4.00838 4.09771 4.11787 4.20589 4.23645 4.31863 4.37510 4.45169 4.47718 4.51468 4.58790 4.63357 4.66337 4.69414 4.82196 4.87420 4.93588 4.98893 5.00493 5.06144 5.06672 5.23533 5.27022 5.37604 5.40147 5.54173 5.60055 5.64458 5.81478 5.84695 5.92587 6.08660 6.12039 6.50049 6.72891 6.87475 7.30751 7.59277 8.85293 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.003817 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.428391 B = 7334.084108 C = 8470.402559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.267 3.733 5 C -0.537 4.537 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.493 3.507 14 O -0.571 6.571 15 C 0.050 3.950 16 N -0.542 5.542 17 C 0.113 3.887 18 C -0.110 4.110 19 C -0.101 4.101 20 C -0.137 4.137 21 C -0.104 4.104 22 C -0.139 4.139 23 C 0.086 3.914 24 O -0.336 6.336 25 C 0.071 3.929 26 C 0.055 3.945 27 H 0.057 0.943 28 C -0.152 4.152 29 H 0.036 0.964 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.019 0.981 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.138 0.862 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.052 0.948 46 H 0.139 0.861 47 H 0.053 0.947 48 H 0.094 0.906 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 -5.615 21.366 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.145 3.855 5 C -0.576 4.576 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.450 6.450 15 C -0.080 4.080 16 N -0.267 5.267 17 C -0.014 4.014 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.155 4.155 21 C -0.122 4.122 22 C -0.157 4.157 23 C 0.043 3.957 24 O -0.253 6.253 25 C -0.004 4.004 26 C -0.053 4.053 27 H 0.074 0.926 28 C -0.209 4.209 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.036 0.964 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.149 0.851 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.155 0.845 43 H 0.175 0.825 44 H 0.168 0.832 45 H 0.071 0.929 46 H 0.157 0.843 47 H 0.072 0.928 48 H 0.113 0.887 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.310 -4.796 21.265 22.049 hybrid contribution 0.062 0.061 -1.346 1.348 sum -3.247 -4.735 19.919 20.730 Atomic orbital electron populations 1.22151 0.94822 1.03436 1.01422 1.21714 0.95092 0.81565 1.03833 1.48274 1.64465 1.15059 1.06125 1.18617 0.95067 0.91349 0.80444 1.21736 0.97900 1.31664 1.06307 0.92995 1.25825 1.02200 0.94540 0.96504 1.70058 1.37642 1.34409 1.14835 0.85405 0.79264 0.77943 0.78411 1.19142 1.19365 1.20949 1.21181 0.77636 0.86885 0.86164 1.90644 1.46517 1.20190 1.87657 1.22127 1.02534 0.96090 0.87273 1.60429 1.50683 1.11513 1.04096 1.20966 0.91839 0.89113 0.99481 1.20234 1.00963 0.96091 0.93856 1.20997 0.98750 0.93460 0.98749 1.21456 0.99223 0.98412 0.96440 1.21331 0.99037 0.98640 0.93210 1.21460 0.99296 0.93259 1.01727 1.18653 0.98770 0.88631 0.89689 1.86256 1.63381 1.20235 1.55412 1.22944 0.92647 0.86573 0.98228 1.21821 1.00315 0.94431 0.88720 0.92560 1.22034 0.99866 0.95053 1.03961 0.94431 0.88560 0.92508 0.91017 0.88267 0.96351 0.98821 0.92518 0.89979 0.85137 0.92157 0.92651 0.87823 0.84460 0.82477 0.83215 0.92936 0.84303 0.92793 0.88744 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.10 2.99 5.93 86.38 0.51 3.50 16 3 N -0.61 -25.62 2.46 -826.16 -2.03 -27.65 16 4 C 0.27 14.56 5.16 85.63 0.44 15.00 16 5 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 9 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 C 0.49 20.57 7.11 87.66 0.62 21.19 16 14 O -0.57 -29.68 14.59 -3.03 -0.04 -29.72 16 15 C 0.05 1.42 3.57 85.56 0.31 1.72 16 16 N -0.54 -16.06 3.92 -884.05 -3.47 -19.52 16 17 C 0.11 3.64 4.59 85.92 0.39 4.03 16 18 C -0.11 -3.63 5.47 -19.63 -0.11 -3.74 16 19 C -0.10 -3.45 9.70 22.23 0.22 -3.23 16 20 C -0.14 -3.82 10.05 22.32 0.22 -3.60 16 21 C -0.10 -2.40 10.03 22.26 0.22 -2.18 16 22 C -0.14 -3.37 10.01 22.40 0.22 -3.15 16 23 C 0.09 2.49 5.63 22.41 0.13 2.61 16 24 O -0.34 -8.63 10.04 -93.74 -0.94 -9.58 16 25 C 0.07 1.45 5.86 71.44 0.42 1.87 16 26 C 0.05 1.16 2.38 44.54 0.11 1.27 16 27 H 0.06 1.09 7.89 -2.39 -0.02 1.07 16 28 C -0.15 -2.39 8.01 71.98 0.58 -1.82 16 29 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.29 7.22 -2.39 -0.02 1.28 16 32 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 33 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 34 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 35 H -0.01 -0.40 7.42 -2.38 -0.02 -0.42 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.08 1.93 7.13 -2.39 -0.02 1.92 16 38 H 0.13 3.08 4.60 -2.39 -0.01 3.07 16 39 H 0.06 2.25 6.15 -2.39 -0.01 2.23 16 40 H 0.06 1.60 7.76 -2.39 -0.02 1.58 16 41 H 0.10 4.01 7.99 -2.91 -0.02 3.99 16 42 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 43 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 44 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 45 H 0.05 1.24 7.91 -2.39 -0.02 1.22 16 46 H 0.14 1.78 7.99 -2.39 -0.02 1.76 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.09 0.95 7.95 -2.38 -0.02 0.93 16 49 H 0.08 1.02 6.53 -2.38 -0.02 1.01 16 Total: -1.00 -78.51 387.56 2.49 -76.02 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.93 Total: 19.38 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.72 Total: 0.14 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -5.21 Total: -103.88 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.99 Total: -39.30 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -78.51 2.49 -76.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272944274.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.174 kcal (2) G-P(sol) polarization free energy of solvation -78.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds