Wall clock time and date at job start Tue Mar 31 2020 16:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46528 * 2 1 4 4 C 1.50699 * 109.46927 * 239.99854 * 2 1 3 5 5 O 1.21277 * 119.99983 * 268.24882 * 4 2 1 6 6 N 1.34775 * 120.00061 * 88.52636 * 4 2 1 7 7 C 1.46499 * 120.00026 * 4.36983 * 6 4 2 8 8 C 1.46499 * 120.00124 * 184.37052 * 6 4 2 9 9 C 1.50704 * 109.46911 * 90.00206 * 8 6 4 10 10 H 1.07997 * 120.00216 * 359.97438 * 9 8 6 11 11 C 1.37877 * 119.99734 * 180.02562 * 9 8 6 12 12 N 1.31520 * 119.99866 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00039 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47178 * 89.99783 * 13 11 9 15 15 H 1.48501 * 109.47272 * 209.99815 * 13 11 9 16 16 H 1.48499 * 109.47158 * 329.99919 * 13 11 9 17 17 N 1.46895 * 109.47154 * 119.99725 * 2 1 3 18 18 C 1.47017 * 110.99916 * 175.94177 * 17 2 1 19 19 C 1.53094 * 109.25602 * 182.39244 * 18 17 2 20 20 O 1.43011 * 109.26263 * 303.14748 * 19 18 17 21 21 C 1.43022 * 113.73769 * 58.67253 * 20 19 18 22 22 H 1.09004 * 109.50421 * 61.26154 * 21 20 19 23 23 C 1.50697 * 109.51136 * 181.39770 * 21 20 19 24 24 C 1.38230 * 119.99791 * 39.50324 * 23 21 20 25 25 C 1.38237 * 119.99858 * 179.76567 * 24 23 21 26 26 C 1.38239 * 119.99858 * 0.51384 * 25 24 23 27 27 C 1.38240 * 119.99818 * 359.74485 * 26 25 24 28 28 C 1.38234 * 120.00098 * 359.97438 * 27 26 25 29 29 C 1.47013 * 111.00309 * 299.57833 * 17 2 1 30 30 H 1.08999 * 109.46805 * 186.90279 * 1 2 3 31 31 H 1.09006 * 109.47318 * 306.89305 * 1 2 3 32 32 H 1.09000 * 109.47461 * 66.90099 * 1 2 3 33 33 H 1.09006 * 109.47371 * 84.75742 * 7 6 4 34 34 H 1.09004 * 109.47775 * 204.75733 * 7 6 4 35 35 H 1.09000 * 109.47391 * 324.75532 * 7 6 4 36 36 H 1.09001 * 109.47161 * 209.99530 * 8 6 4 37 37 H 1.08997 * 109.47194 * 330.00037 * 8 6 4 38 38 H 0.97008 * 119.99296 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.50407 * 302.32607 * 18 17 2 40 40 H 1.09003 * 109.50183 * 62.45598 * 18 17 2 41 41 H 1.09000 * 109.50524 * 183.21770 * 19 18 17 42 42 H 1.09002 * 109.54507 * 63.11123 * 19 18 17 43 43 H 1.08004 * 120.00533 * 0.02562 * 24 23 21 44 44 H 1.07997 * 120.00024 * 180.23411 * 25 24 23 45 45 H 1.07998 * 119.99823 * 179.71759 * 26 25 24 46 46 H 1.07997 * 119.99329 * 179.97438 * 27 26 25 47 47 H 1.07993 * 120.00096 * 179.97438 * 28 27 26 48 48 H 1.09013 * 109.50535 * 297.54407 * 29 17 2 49 49 H 1.08998 * 109.51102 * 57.62646 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2647 -1.9001 -1.1914 6 7 2.2286 -0.0227 -2.3728 7 6 2.0460 1.4307 -2.3933 8 6 2.6247 -0.7285 -3.5939 9 6 1.3926 -1.1472 -4.3541 10 1 0.4127 -0.9115 -3.9662 11 6 1.5166 -1.8320 -5.5443 12 7 2.7100 -2.1194 -6.0164 13 14 -0.0105 -2.3517 -6.4863 14 1 -0.3985 -1.2751 -7.4328 15 1 0.2745 -3.5971 -7.2431 16 1 -1.1217 -2.5958 -5.5319 17 7 2.0197 -0.6924 1.1994 18 6 3.4861 -0.7967 1.1858 19 6 3.9484 -1.5751 2.4204 20 8 3.4629 -0.9242 3.5976 21 6 2.0384 -0.8061 3.6442 22 1 1.5904 -1.7998 3.6375 23 6 1.6345 -0.0795 4.9011 24 6 2.3806 0.9948 5.3485 25 6 2.0073 1.6643 6.4988 26 6 0.8940 1.2530 7.2076 27 6 0.1509 0.1753 6.7630 28 6 0.5209 -0.4906 5.6095 29 6 1.5566 -0.0200 2.4220 30 1 -0.3633 -1.0202 0.1235 31 1 -0.3634 0.6170 0.8219 32 1 -0.3634 0.4032 -0.9453 33 1 2.9633 1.9170 -2.0613 34 1 1.8105 1.7531 -3.4076 35 1 1.2282 1.7037 -1.7264 36 1 3.2283 -0.0676 -4.2160 37 1 3.2068 -1.6116 -3.3306 38 1 2.7971 -2.6010 -6.8540 39 1 3.8054 -1.3204 0.2847 40 1 3.9221 0.2022 1.2009 41 1 5.0377 -1.6057 2.4445 42 1 3.5566 -2.5914 2.3785 43 1 3.2527 1.3136 4.7970 44 1 2.5880 2.5060 6.8463 45 1 0.6050 1.7733 8.1088 46 1 -0.7186 -0.1462 7.3170 47 1 -0.0593 -1.3327 5.2625 48 1 1.9619 0.9914 2.4569 49 1 0.4676 0.0242 2.4229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298273428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:59 Heat of formation + Delta-G solvation = -36.682730 kcal Electronic energy + Delta-G solvation = -29117.576926 eV Core-core repulsion = 25238.102994 eV Total energy + Delta-G solvation = -3879.473933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.44404 -39.38817 -38.37544 -35.82076 -34.77601 -32.98333 -32.67130 -31.29144 -31.09827 -29.47000 -27.82765 -26.59082 -25.88358 -24.68663 -23.46533 -22.87214 -22.09329 -21.32934 -20.29764 -18.39736 -17.31389 -16.75723 -16.56539 -16.39502 -16.22719 -15.58704 -15.32302 -15.03269 -14.72897 -14.41962 -14.33342 -14.26666 -14.14775 -13.66644 -13.57898 -13.10414 -13.02620 -12.85864 -12.36127 -12.20602 -12.16287 -11.97551 -11.74897 -11.71089 -11.49978 -11.31956 -11.23247 -11.17852 -11.04880 -10.89041 -10.60523 -10.51964 -10.17327 -9.81395 -9.63899 -9.14324 -9.00819 -8.79567 -8.45412 -8.28184 -7.65315 -6.06131 -4.11114 1.06378 1.18547 3.28517 3.30611 3.35692 3.38834 3.43261 3.58096 3.75017 4.09307 4.42936 4.59046 4.68161 4.73838 4.86494 4.89028 4.92253 5.00513 5.08903 5.18199 5.23236 5.28950 5.29152 5.33319 5.37661 5.45992 5.50192 5.61874 5.65938 5.72502 5.77640 5.81725 5.83715 5.86541 5.93096 5.99135 6.14202 6.22301 6.28276 6.33290 6.37851 6.75128 6.84384 6.94031 7.08704 7.12344 7.42202 7.52301 7.90435 8.21132 8.38883 8.88256 9.08351 9.54197 11.01855 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023894 B = 0.002480 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.553925 B =11285.996562 C =11579.408133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.065 3.935 3 H 0.056 0.944 4 C 0.512 3.488 5 O -0.523 6.523 6 N -0.604 5.604 7 C 0.082 3.918 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.513 5.513 18 C 0.013 3.987 19 C 0.069 3.931 20 O -0.380 6.380 21 C 0.136 3.864 22 H 0.077 0.923 23 C -0.079 4.079 24 C -0.091 4.091 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.106 4.106 29 C 0.030 3.970 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.042 0.958 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 9.312 23.494 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 H 0.074 0.926 4 C 0.297 3.703 5 O -0.399 6.399 6 N -0.337 5.337 7 C -0.062 4.062 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.239 5.239 18 C -0.115 4.115 19 C -0.008 4.008 20 O -0.299 6.299 21 C 0.078 3.922 22 H 0.095 0.905 23 C -0.080 4.080 24 C -0.109 4.109 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.125 4.125 29 C -0.098 4.098 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.055 0.945 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.060 0.940 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.048 8.168 23.454 24.920 hybrid contribution -0.659 0.595 -0.960 1.308 sum -2.707 8.764 22.494 24.292 Atomic orbital electron populations 1.21748 0.92150 1.03597 1.02160 1.21708 0.97404 0.95757 0.89788 0.92624 1.19999 0.78862 0.87626 0.83838 1.90660 1.50347 1.14872 1.84009 1.48182 1.67244 1.06954 1.11280 1.21667 0.99539 0.81870 1.03144 1.19298 0.96015 0.92779 0.79254 1.21425 0.92898 1.36586 1.05631 0.92485 1.24942 0.96214 0.95599 0.97372 1.69938 1.21951 1.40480 1.20953 0.86496 0.83080 0.78103 0.79747 1.20648 1.21062 1.19872 1.61951 1.10316 1.51159 1.00425 1.22908 0.87585 0.99942 1.01086 1.22655 0.99180 0.95946 0.83000 1.87960 1.20161 1.80087 1.41726 1.20862 0.82281 0.98069 0.90961 0.90525 1.19589 0.96022 0.96482 0.95898 1.21029 0.99072 0.94675 0.96171 1.21177 0.97320 1.00091 0.95675 1.21182 0.95648 0.97153 0.99801 1.21099 1.00038 0.96320 0.96596 1.21005 0.96578 0.99913 0.94963 1.22796 1.01592 0.95936 0.89495 0.90761 0.92143 0.91245 0.93975 0.90459 0.92632 0.95044 0.93759 0.92703 0.87984 0.94476 0.88253 0.91789 0.85672 0.86070 0.86183 0.85933 0.85750 0.94004 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.54 37.16 0.32 -1.61 16 2 C 0.06 1.01 1.64 -68.86 -0.11 0.90 16 3 H 0.06 0.78 6.62 -51.93 -0.34 0.43 16 4 C 0.51 10.59 5.77 -10.99 -0.06 10.52 16 5 O -0.52 -13.04 14.84 5.56 0.08 -12.96 16 6 N -0.60 -12.73 2.86 -182.95 -0.52 -13.26 16 7 C 0.08 1.30 9.79 59.85 0.59 1.88 16 8 C 0.25 6.40 5.17 -5.19 -0.03 6.37 16 9 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 13 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 17 N -0.51 -7.65 4.34 -227.71 -0.99 -8.64 16 18 C 0.01 0.19 5.25 -3.71 -0.02 0.17 16 19 C 0.07 0.87 7.01 37.21 0.26 1.14 16 20 O -0.38 -4.91 9.78 -35.23 -0.34 -5.26 16 21 C 0.14 1.60 3.01 -27.83 -0.08 1.52 16 22 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 23 C -0.08 -0.84 4.98 -104.63 -0.52 -1.36 16 24 C -0.09 -0.93 9.36 -39.58 -0.37 -1.30 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 27 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 28 C -0.11 -0.99 9.67 -39.58 -0.38 -1.37 16 29 C 0.03 0.36 4.61 -3.71 -0.02 0.35 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.66 6.74 -51.93 -0.35 0.31 16 32 H 0.07 0.98 7.55 -51.93 -0.39 0.59 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 35 H 0.05 0.74 5.92 -51.93 -0.31 0.43 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.10 1.78 6.03 -51.93 -0.31 1.47 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.13 1.27 7.77 -52.48 -0.41 0.87 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.98 8.04 -52.49 -0.42 0.56 16 48 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 49 H 0.09 1.00 6.35 -51.93 -0.33 0.67 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -33.32 391.38 -10.06 -43.38 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.85 Total: 0.38 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.05 Total: -0.54 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.78 Total: -47.67 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.26 Total: -18.22 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.32 -10.06 -43.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298273428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.696 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds