Wall clock time and date at job start Tue Mar 31 2020 16:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46528 * 2 1 4 4 C 1.50699 * 109.46927 * 239.99854 * 2 1 3 5 5 O 1.21277 * 119.99983 * 268.24882 * 4 2 1 6 6 N 1.34775 * 120.00061 * 88.52636 * 4 2 1 7 7 C 1.46499 * 120.00026 * 4.36983 * 6 4 2 8 8 C 1.46499 * 120.00124 * 184.37052 * 6 4 2 9 9 C 1.50704 * 109.46911 * 90.00206 * 8 6 4 10 10 H 1.07997 * 120.00216 * 359.97438 * 9 8 6 11 11 C 1.37877 * 119.99734 * 180.02562 * 9 8 6 12 12 N 1.31520 * 119.99866 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00039 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47178 * 89.99783 * 13 11 9 15 15 H 1.48501 * 109.47272 * 209.99815 * 13 11 9 16 16 H 1.48499 * 109.47158 * 329.99919 * 13 11 9 17 17 N 1.46895 * 109.47154 * 119.99725 * 2 1 3 18 18 C 1.47017 * 110.99916 * 175.94177 * 17 2 1 19 19 C 1.53094 * 109.25602 * 182.39244 * 18 17 2 20 20 O 1.43011 * 109.26263 * 303.14748 * 19 18 17 21 21 C 1.43022 * 113.73769 * 58.67253 * 20 19 18 22 22 H 1.09004 * 109.50421 * 61.26154 * 21 20 19 23 23 C 1.50697 * 109.51136 * 181.39770 * 21 20 19 24 24 C 1.38230 * 119.99791 * 39.50324 * 23 21 20 25 25 C 1.38237 * 119.99858 * 179.76567 * 24 23 21 26 26 C 1.38239 * 119.99858 * 0.51384 * 25 24 23 27 27 C 1.38240 * 119.99818 * 359.74485 * 26 25 24 28 28 C 1.38234 * 120.00098 * 359.97438 * 27 26 25 29 29 C 1.47013 * 111.00309 * 299.57833 * 17 2 1 30 30 H 1.08999 * 109.46805 * 186.90279 * 1 2 3 31 31 H 1.09006 * 109.47318 * 306.89305 * 1 2 3 32 32 H 1.09000 * 109.47461 * 66.90099 * 1 2 3 33 33 H 1.09006 * 109.47371 * 84.75742 * 7 6 4 34 34 H 1.09004 * 109.47775 * 204.75733 * 7 6 4 35 35 H 1.09000 * 109.47391 * 324.75532 * 7 6 4 36 36 H 1.09001 * 109.47161 * 209.99530 * 8 6 4 37 37 H 1.08997 * 109.47194 * 330.00037 * 8 6 4 38 38 H 0.97008 * 119.99296 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.50407 * 302.32607 * 18 17 2 40 40 H 1.09003 * 109.50183 * 62.45598 * 18 17 2 41 41 H 1.09000 * 109.50524 * 183.21770 * 19 18 17 42 42 H 1.09002 * 109.54507 * 63.11123 * 19 18 17 43 43 H 1.08004 * 120.00533 * 0.02562 * 24 23 21 44 44 H 1.07997 * 120.00024 * 180.23411 * 25 24 23 45 45 H 1.07998 * 119.99823 * 179.71759 * 26 25 24 46 46 H 1.07997 * 119.99329 * 179.97438 * 27 26 25 47 47 H 1.07993 * 120.00096 * 179.97438 * 28 27 26 48 48 H 1.09013 * 109.50535 * 297.54407 * 29 17 2 49 49 H 1.08998 * 109.51102 * 57.62646 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2647 -1.9001 -1.1914 6 7 2.2286 -0.0227 -2.3728 7 6 2.0460 1.4307 -2.3933 8 6 2.6247 -0.7285 -3.5939 9 6 1.3926 -1.1472 -4.3541 10 1 0.4127 -0.9115 -3.9662 11 6 1.5166 -1.8320 -5.5443 12 7 2.7100 -2.1194 -6.0164 13 14 -0.0105 -2.3517 -6.4863 14 1 -0.3985 -1.2751 -7.4328 15 1 0.2745 -3.5971 -7.2431 16 1 -1.1217 -2.5958 -5.5319 17 7 2.0197 -0.6924 1.1994 18 6 3.4861 -0.7967 1.1858 19 6 3.9484 -1.5751 2.4204 20 8 3.4629 -0.9242 3.5976 21 6 2.0384 -0.8061 3.6442 22 1 1.5904 -1.7998 3.6375 23 6 1.6345 -0.0795 4.9011 24 6 2.3806 0.9948 5.3485 25 6 2.0073 1.6643 6.4988 26 6 0.8940 1.2530 7.2076 27 6 0.1509 0.1753 6.7630 28 6 0.5209 -0.4906 5.6095 29 6 1.5566 -0.0200 2.4220 30 1 -0.3633 -1.0202 0.1235 31 1 -0.3634 0.6170 0.8219 32 1 -0.3634 0.4032 -0.9453 33 1 2.9633 1.9170 -2.0613 34 1 1.8105 1.7531 -3.4076 35 1 1.2282 1.7037 -1.7264 36 1 3.2283 -0.0676 -4.2160 37 1 3.2068 -1.6116 -3.3306 38 1 2.7971 -2.6010 -6.8540 39 1 3.8054 -1.3204 0.2847 40 1 3.9221 0.2022 1.2009 41 1 5.0377 -1.6057 2.4445 42 1 3.5566 -2.5914 2.3785 43 1 3.2527 1.3136 4.7970 44 1 2.5880 2.5060 6.8463 45 1 0.6050 1.7733 8.1088 46 1 -0.7186 -0.1462 7.3170 47 1 -0.0593 -1.3327 5.2625 48 1 1.9619 0.9914 2.4569 49 1 0.4676 0.0242 2.4229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298273428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:57 Heat of formation + Delta-G solvation = -58.182647 kcal Electronic energy + Delta-G solvation = -29118.509233 eV Core-core repulsion = 25238.102994 eV Total energy + Delta-G solvation = -3880.406239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.58147 -40.55039 -39.37815 -37.07785 -36.50737 -34.74736 -33.81539 -32.52252 -31.75470 -30.43529 -29.66735 -27.68471 -27.34824 -25.97957 -24.98358 -23.65209 -23.26231 -22.37111 -21.30111 -19.90548 -18.69433 -18.25012 -18.08127 -17.50340 -17.21207 -16.94024 -16.45819 -16.34640 -16.04621 -15.78641 -15.57483 -15.19144 -15.12782 -14.97052 -14.57330 -14.20191 -14.18659 -13.97608 -13.75124 -13.52257 -13.44445 -13.35975 -13.15594 -12.96480 -12.82537 -12.70422 -12.61629 -12.50663 -12.37550 -12.20985 -11.96941 -11.89329 -11.71907 -11.50984 -10.83633 -10.65262 -10.46698 -9.78951 -9.66356 -9.47190 -9.37890 -8.23571 -6.38576 0.39054 0.53764 1.35756 1.38932 1.49082 1.76285 2.15142 2.39120 2.60479 2.77130 2.97624 3.06011 3.53864 3.78199 3.84371 3.91974 4.00630 4.01422 4.03204 4.16805 4.22519 4.27688 4.31903 4.35613 4.41085 4.51151 4.62496 4.62524 4.64969 4.69552 4.74820 4.76840 4.84735 4.88402 4.90677 4.98964 5.08583 5.19781 5.20647 5.21359 5.53860 5.58713 5.65117 5.66414 5.73165 5.82690 5.90563 6.04390 6.10747 6.15722 6.68731 6.75895 7.27042 7.46690 8.83506 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023894 B = 0.002480 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.553925 B =11285.996562 C =11579.408133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 H 0.082 0.918 4 C 0.504 3.496 5 O -0.578 6.578 6 N -0.611 5.611 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.541 4.541 10 H 0.054 0.946 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.272 1.272 17 N -0.530 5.530 18 C 0.017 3.983 19 C 0.075 3.925 20 O -0.385 6.385 21 C 0.137 3.863 22 H 0.069 0.931 23 C -0.095 4.095 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.116 4.116 29 C 0.037 3.963 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.023 0.977 37 H -0.003 1.003 38 H 0.267 0.733 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.118 0.882 42 H 0.053 0.947 43 H 0.119 0.881 44 H 0.139 0.861 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.133 0.867 48 H 0.049 0.951 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 11.392 25.473 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 H 0.100 0.900 4 C 0.292 3.708 5 O -0.457 6.457 6 N -0.343 5.343 7 C -0.066 4.066 8 C 0.139 3.861 9 C -0.580 4.580 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.568 5.568 13 Si 0.792 3.208 14 H -0.187 1.187 15 H -0.207 1.207 16 H -0.197 1.197 17 N -0.257 5.257 18 C -0.111 4.111 19 C -0.002 4.002 20 O -0.304 6.304 21 C 0.079 3.921 22 H 0.087 0.913 23 C -0.095 4.095 24 C -0.124 4.124 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.134 4.134 29 C -0.091 4.091 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.041 0.959 37 H 0.015 0.985 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.136 0.864 42 H 0.071 0.929 43 H 0.137 0.863 44 H 0.157 0.843 45 H 0.163 0.837 46 H 0.163 0.837 47 H 0.151 0.849 48 H 0.067 0.933 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.107 10.305 25.455 27.767 hybrid contribution 0.019 -0.039 -1.495 1.495 sum -4.088 10.266 23.960 26.386 Atomic orbital electron populations 1.21763 0.90486 1.03266 1.03696 1.21635 0.98421 0.95973 0.87411 0.90038 1.20970 0.77555 0.87254 0.84996 1.90625 1.52492 1.17542 1.85038 1.48195 1.67034 1.09138 1.09965 1.21955 1.02144 0.78486 1.03991 1.18752 0.94890 0.91397 0.81034 1.21687 0.93229 1.36942 1.06131 0.92733 1.25879 0.99504 0.95441 0.98418 1.70062 1.24188 1.41079 1.21502 0.85406 0.78874 0.78102 0.78384 1.18728 1.20730 1.19669 1.61916 1.10362 1.52190 1.01199 1.22793 0.87865 1.00138 1.00325 1.22614 1.00218 0.95009 0.82377 1.87964 1.21103 1.79952 1.41397 1.20903 0.81521 0.97950 0.91737 0.91272 1.19549 0.97047 0.97075 0.95859 1.21086 0.99146 0.95119 0.97053 1.21436 0.97757 1.00421 0.95113 1.21539 0.95009 0.96918 1.00341 1.21423 1.00647 0.96040 0.96154 1.21197 0.96357 1.00403 0.95400 1.22833 1.02313 0.95924 0.88000 0.92688 0.88310 0.91313 0.91442 0.90926 0.89309 0.95938 0.98458 0.92413 0.91544 0.93565 0.86424 0.92881 0.86315 0.84274 0.83710 0.83694 0.84895 0.93280 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.54 71.98 0.61 -2.84 16 2 C 0.08 2.31 1.64 44.17 0.07 2.38 16 3 H 0.08 2.04 6.62 -2.39 -0.02 2.02 16 4 C 0.50 21.36 5.77 87.66 0.51 21.87 16 5 O -0.58 -30.47 14.84 -3.02 -0.04 -30.51 16 6 N -0.61 -26.24 2.86 -851.12 -2.43 -28.67 16 7 C 0.08 2.30 9.79 127.77 1.25 3.55 16 8 C 0.26 14.22 5.17 85.63 0.44 14.66 16 9 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 10 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 11 C 0.01 0.38 5.46 84.65 0.46 0.84 16 12 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 13 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 14 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 N -0.53 -15.56 4.34 -874.35 -3.80 -19.35 16 18 C 0.02 0.50 5.25 86.31 0.45 0.96 16 19 C 0.07 1.92 7.01 72.01 0.50 2.42 16 20 O -0.39 -9.76 9.78 -148.98 -1.46 -11.22 16 21 C 0.14 3.10 3.01 29.88 0.09 3.19 16 22 H 0.07 1.65 8.01 -2.39 -0.02 1.63 16 23 C -0.09 -1.87 4.98 -19.87 -0.10 -1.97 16 24 C -0.11 -1.99 9.36 22.27 0.21 -1.78 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 26 C -0.12 -1.54 10.05 22.27 0.22 -1.32 16 27 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 28 C -0.12 -1.92 9.67 22.27 0.22 -1.70 16 29 C 0.04 0.82 4.61 86.31 0.40 1.22 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.10 1.78 6.74 -2.38 -0.02 1.77 16 32 H 0.07 1.78 7.55 -2.39 -0.02 1.76 16 33 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 35 H 0.09 2.08 5.92 -2.39 -0.01 2.07 16 36 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 37 H 0.00 -0.17 7.36 -2.39 -0.02 -0.19 16 38 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 39 H 0.07 2.47 6.03 -2.39 -0.01 2.46 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 43 H 0.12 2.30 7.77 -2.91 -0.02 2.28 16 44 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 46 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 47 H 0.13 1.87 8.04 -2.91 -0.02 1.85 16 48 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.10 2.02 6.35 -2.39 -0.02 2.01 16 Total: -1.00 -75.93 391.38 1.54 -74.39 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.93 Total: 17.31 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.03 Total: 7.29 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -5.94 Total: -104.27 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.50 Total: -41.73 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.93 1.54 -74.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298273428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.205 kcal (2) G-P(sol) polarization free energy of solvation -75.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds