Wall clock time and date at job start Tue Mar 31 2020 19:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46825 * 2 1 4 4 C 1.46498 * 119.99636 * 269.99696 * 3 2 1 5 5 C 1.50704 * 109.47212 * 270.00120 * 4 3 2 6 6 H 1.07997 * 120.00051 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99812 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00382 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99812 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46971 * 90.00178 * 9 7 5 11 11 H 1.48496 * 109.47039 * 210.00428 * 9 7 5 12 12 H 1.48505 * 109.47081 * 330.00583 * 9 7 5 13 13 C 1.34771 * 120.00063 * 89.99944 * 3 2 1 14 14 O 1.21285 * 119.99889 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00366 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47307 * 179.97438 * 15 13 3 17 17 C 1.46897 * 111.00218 * 186.20267 * 16 15 13 18 18 C 1.50704 * 115.56474 * 319.80465 * 17 16 15 19 19 C 1.38267 * 119.94527 * 119.75539 * 18 17 16 20 20 C 1.38143 * 120.05442 * 179.72997 * 19 18 17 21 21 C 1.38725 * 119.94139 * 0.52292 * 20 19 18 22 22 O 1.35908 * 120.05508 * 179.72638 * 21 20 19 23 23 C 1.42899 * 116.99942 * 0.02692 * 22 21 20 24 24 C 1.38735 * 119.89230 * 359.75030 * 21 20 19 25 25 C 1.38144 * 119.94088 * 0.02562 * 24 21 20 26 26 C 1.53006 * 117.49882 * 105.48777 * 17 16 15 27 27 C 1.53002 * 59.99990 * 107.49178 * 26 17 16 28 28 H 1.08999 * 109.46853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47288 * 300.00361 * 1 2 3 30 30 H 1.08997 * 109.47216 * 59.99921 * 1 2 3 31 31 H 1.08990 * 109.47064 * 239.99915 * 2 1 3 32 32 H 1.09002 * 109.47162 * 119.99591 * 2 1 3 33 33 H 1.09004 * 109.47227 * 30.00317 * 4 3 2 34 34 H 1.09001 * 109.47191 * 150.00272 * 4 3 2 35 35 H 0.96996 * 120.00185 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46899 * 59.99808 * 15 13 3 37 37 H 1.09002 * 109.47014 * 299.99994 * 15 13 3 38 38 H 1.00896 * 111.00358 * 310.16218 * 16 15 13 39 39 H 1.08000 * 119.96943 * 359.97438 * 19 18 17 40 40 H 1.07998 * 120.02562 * 180.29754 * 20 19 18 41 41 H 1.09003 * 109.47271 * 59.99009 * 23 22 21 42 42 H 1.08996 * 109.47554 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.46843 * 299.99475 * 23 22 21 44 44 H 1.08000 * 120.02965 * 179.97438 * 24 21 20 45 45 H 1.08006 * 119.96925 * 180.02562 * 25 24 21 46 46 H 1.08996 * 117.50319 * 214.98271 * 26 17 16 47 47 H 1.09001 * 117.49398 * 0.02562 * 26 17 16 48 48 H 1.08993 * 117.50650 * 252.51427 * 27 26 17 49 49 H 1.09002 * 117.49520 * 107.48438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3896 -2.8781 8 7 3.3491 3.1256 -3.6183 9 14 5.9131 2.0955 -3.4176 10 1 5.9759 0.8743 -4.2602 11 1 6.3922 3.2626 -4.2009 12 1 6.7735 1.9158 -2.2206 13 6 2.2429 2.0166 1.1671 14 8 2.6475 3.1600 1.1671 15 6 1.9912 1.3065 2.4723 16 7 2.3101 2.2063 3.5888 17 6 2.2179 1.5026 4.8749 18 6 1.0644 0.5422 5.0095 19 6 1.3065 -0.7984 5.2462 20 6 0.2506 -1.6798 5.3755 21 6 -1.0531 -1.2207 5.2569 22 8 -2.0934 -2.0869 5.3782 23 6 -1.7715 -3.4565 5.6282 24 6 -1.2932 0.1239 5.0138 25 6 -0.2340 1.0020 4.8899 26 6 3.5280 1.1356 5.5749 27 6 2.6543 2.2627 6.1290 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1385 35 1 3.6751 3.5160 -4.4441 36 1 2.6211 0.4188 2.5302 37 1 0.9431 1.0127 2.5298 38 1 3.2213 2.6226 3.4689 39 1 2.3218 -1.1560 5.3340 40 1 0.4402 -2.7260 5.5652 41 1 -1.2150 -3.5343 6.5623 42 1 -2.6903 -4.0379 5.7036 43 1 -1.1633 -3.8420 4.8098 44 1 -2.3072 0.4836 4.9206 45 1 -0.4204 2.0490 4.7010 46 1 3.5556 0.1995 6.1327 47 1 4.4582 1.4167 5.0812 48 1 3.0096 3.2850 5.9998 49 1 2.1069 2.0681 7.0514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341688154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:17 Heat of formation + Delta-G solvation = -13.439931 kcal Electronic energy + Delta-G solvation = -28932.963080 eV Core-core repulsion = 25054.497030 eV Total energy + Delta-G solvation = -3878.466049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.56756 -39.36156 -38.57637 -36.63933 -35.24609 -33.20174 -32.58796 -31.27075 -30.14181 -30.04409 -27.75266 -27.58245 -25.55146 -23.46123 -22.98596 -22.89380 -22.24238 -21.98194 -19.84889 -18.42134 -18.33825 -16.83249 -16.43898 -16.30669 -16.20991 -15.99695 -15.37126 -15.29293 -14.95692 -14.56817 -14.36656 -13.93801 -13.75201 -13.52786 -13.31480 -13.25717 -13.09049 -12.91353 -12.56135 -12.27021 -12.06717 -11.99681 -11.81465 -11.58117 -11.50899 -11.41460 -11.17628 -11.09687 -10.88752 -10.81424 -10.66149 -10.50391 -10.45465 -10.11419 -9.61276 -9.17604 -8.84028 -8.42050 -8.30303 -8.15536 -7.62017 -6.02558 -4.07269 1.16590 1.18308 3.00981 3.30219 3.36792 3.39996 3.47151 3.50161 3.54906 3.88024 4.27184 4.43970 4.50040 4.55556 4.67589 4.74480 4.82100 4.84637 5.00024 5.13542 5.14258 5.21634 5.30576 5.31994 5.33751 5.39156 5.51693 5.53952 5.58464 5.63751 5.72303 5.78836 5.83934 5.87371 6.01642 6.04398 6.09019 6.13407 6.26797 6.45361 6.53159 6.55998 6.92508 7.13771 7.16073 7.41623 7.49146 7.59076 7.94232 8.25981 8.46909 8.92418 9.14114 9.57738 11.05477 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014129 B = 0.003016 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.240421 B = 9280.497643 C =10329.372213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.532 6.532 15 C 0.045 3.955 16 N -0.629 5.629 17 C 0.097 3.903 18 C -0.081 4.081 19 C -0.072 4.072 20 C -0.208 4.208 21 C 0.126 3.874 22 O -0.318 6.318 23 C 0.027 3.973 24 C -0.152 4.152 25 C -0.054 4.054 26 C -0.216 4.216 27 C -0.156 4.156 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.358 0.642 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.054 0.946 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 -13.014 20.980 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.409 6.409 15 C -0.087 4.087 16 N -0.261 5.261 17 C 0.005 3.995 18 C -0.082 4.082 19 C -0.090 4.090 20 C -0.227 4.227 21 C 0.081 3.919 22 O -0.232 6.232 23 C -0.068 4.068 24 C -0.170 4.170 25 C -0.072 4.072 26 C -0.256 4.256 27 C -0.194 4.194 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.179 0.821 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.969 -11.975 20.761 25.590 hybrid contribution 2.002 -1.046 -0.432 2.299 sum -6.967 -13.021 20.328 25.126 Atomic orbital electron populations 1.22211 0.96734 1.01345 1.02391 1.21400 0.93587 0.84269 1.02464 1.48226 1.63876 1.13179 1.07669 1.19254 0.96149 0.93683 0.78111 1.21431 0.96969 1.31811 1.06206 0.92595 1.24934 0.97798 0.94953 0.96426 1.69931 1.35665 1.33437 1.14308 0.86511 0.84756 0.77660 0.78559 1.20681 1.21080 1.19960 1.20204 0.78812 0.87042 0.84995 1.90671 1.45474 1.17766 1.86987 1.21891 1.02632 0.94451 0.89753 1.60006 1.37168 1.30675 0.98229 1.20046 0.92565 0.97215 0.89667 1.18739 0.92876 0.92620 1.03917 1.20825 0.98759 0.92197 0.97256 1.21148 0.91825 1.00508 1.09238 1.19067 0.86434 0.90174 0.96248 1.86075 1.31805 1.18692 1.86620 1.23049 1.02965 0.80109 1.00646 1.20459 1.00253 0.90259 1.06078 1.20880 0.90837 1.00029 0.95467 1.23722 0.95745 1.00255 1.05869 1.23130 1.02475 0.97364 0.96382 0.92300 0.92987 0.92003 0.90017 0.91999 0.95065 0.93868 0.92733 0.92852 0.88523 0.82065 0.85728 0.85506 0.92746 0.88307 0.92541 0.85072 0.84606 0.88666 0.88476 0.88069 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 37.16 0.38 -2.01 16 2 C 0.11 1.77 5.93 -4.04 -0.02 1.75 16 3 N -0.60 -12.79 2.46 -175.06 -0.43 -13.22 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.50 10.65 7.70 -10.99 -0.08 10.57 16 14 O -0.53 -13.54 15.64 5.55 0.09 -13.45 16 15 C 0.04 0.71 4.08 -4.98 -0.02 0.69 16 16 N -0.63 -9.34 6.48 -102.39 -0.66 -10.01 16 17 C 0.10 1.14 2.39 -132.75 -0.32 0.82 16 18 C -0.08 -0.90 3.90 -104.60 -0.41 -1.31 16 19 C -0.07 -0.71 9.25 -39.61 -0.37 -1.08 16 20 C -0.21 -1.96 9.04 -39.44 -0.36 -2.31 16 21 C 0.13 1.32 6.69 -39.22 -0.26 1.05 16 22 O -0.32 -3.14 10.50 -19.45 -0.20 -3.35 16 23 C 0.03 0.16 9.81 101.05 0.99 1.16 16 24 C -0.15 -1.62 9.99 -39.43 -0.39 -2.02 16 25 C -0.05 -0.60 8.98 -39.61 -0.36 -0.96 16 26 C -0.22 -2.18 9.46 -26.73 -0.25 -2.43 16 27 C -0.16 -1.59 10.16 -26.73 -0.27 -1.86 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.72 7.22 -51.93 -0.37 0.35 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.05 0.79 7.38 -51.93 -0.38 0.40 16 37 H 0.10 1.44 5.86 -51.93 -0.30 1.14 16 38 H 0.36 5.66 8.03 -39.29 -0.32 5.34 16 39 H 0.12 1.07 6.71 -52.49 -0.35 0.72 16 40 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 41 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 44 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 46 H 0.09 0.83 6.85 -51.93 -0.36 0.48 16 47 H 0.10 1.00 8.12 -51.93 -0.42 0.58 16 48 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -33.66 401.57 -9.33 -42.98 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.70 Total: 5.21 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.19 Total: -5.10 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.36 Total: -49.30 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.12 Total: -16.80 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.66 -9.33 -42.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341688154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.545 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds