Wall clock time and date at job start Tue Mar 31 2020 19:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46825 * 2 1 4 4 C 1.46498 * 119.99636 * 269.99696 * 3 2 1 5 5 C 1.50704 * 109.47212 * 270.00120 * 4 3 2 6 6 H 1.07997 * 120.00051 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99812 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00382 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99812 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46971 * 90.00178 * 9 7 5 11 11 H 1.48496 * 109.47039 * 210.00428 * 9 7 5 12 12 H 1.48505 * 109.47081 * 330.00583 * 9 7 5 13 13 C 1.34771 * 120.00063 * 89.99944 * 3 2 1 14 14 O 1.21285 * 119.99889 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00366 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47307 * 179.97438 * 15 13 3 17 17 C 1.46897 * 111.00218 * 186.20267 * 16 15 13 18 18 C 1.50704 * 115.56474 * 319.80465 * 17 16 15 19 19 C 1.38267 * 119.94527 * 119.75539 * 18 17 16 20 20 C 1.38143 * 120.05442 * 179.72997 * 19 18 17 21 21 C 1.38725 * 119.94139 * 0.52292 * 20 19 18 22 22 O 1.35908 * 120.05508 * 179.72638 * 21 20 19 23 23 C 1.42899 * 116.99942 * 0.02692 * 22 21 20 24 24 C 1.38735 * 119.89230 * 359.75030 * 21 20 19 25 25 C 1.38144 * 119.94088 * 0.02562 * 24 21 20 26 26 C 1.53006 * 117.49882 * 105.48777 * 17 16 15 27 27 C 1.53002 * 59.99990 * 107.49178 * 26 17 16 28 28 H 1.08999 * 109.46853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47288 * 300.00361 * 1 2 3 30 30 H 1.08997 * 109.47216 * 59.99921 * 1 2 3 31 31 H 1.08990 * 109.47064 * 239.99915 * 2 1 3 32 32 H 1.09002 * 109.47162 * 119.99591 * 2 1 3 33 33 H 1.09004 * 109.47227 * 30.00317 * 4 3 2 34 34 H 1.09001 * 109.47191 * 150.00272 * 4 3 2 35 35 H 0.96996 * 120.00185 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46899 * 59.99808 * 15 13 3 37 37 H 1.09002 * 109.47014 * 299.99994 * 15 13 3 38 38 H 1.00896 * 111.00358 * 310.16218 * 16 15 13 39 39 H 1.08000 * 119.96943 * 359.97438 * 19 18 17 40 40 H 1.07998 * 120.02562 * 180.29754 * 20 19 18 41 41 H 1.09003 * 109.47271 * 59.99009 * 23 22 21 42 42 H 1.08996 * 109.47554 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.46843 * 299.99475 * 23 22 21 44 44 H 1.08000 * 120.02965 * 179.97438 * 24 21 20 45 45 H 1.08006 * 119.96925 * 180.02562 * 25 24 21 46 46 H 1.08996 * 117.50319 * 214.98271 * 26 17 16 47 47 H 1.09001 * 117.49398 * 0.02562 * 26 17 16 48 48 H 1.08993 * 117.50650 * 252.51427 * 27 26 17 49 49 H 1.09002 * 117.49520 * 107.48438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3896 -2.8781 8 7 3.3491 3.1256 -3.6183 9 14 5.9131 2.0955 -3.4176 10 1 5.9759 0.8743 -4.2602 11 1 6.3922 3.2626 -4.2009 12 1 6.7735 1.9158 -2.2206 13 6 2.2429 2.0166 1.1671 14 8 2.6475 3.1600 1.1671 15 6 1.9912 1.3065 2.4723 16 7 2.3101 2.2063 3.5888 17 6 2.2179 1.5026 4.8749 18 6 1.0644 0.5422 5.0095 19 6 1.3065 -0.7984 5.2462 20 6 0.2506 -1.6798 5.3755 21 6 -1.0531 -1.2207 5.2569 22 8 -2.0934 -2.0869 5.3782 23 6 -1.7715 -3.4565 5.6282 24 6 -1.2932 0.1239 5.0138 25 6 -0.2340 1.0020 4.8899 26 6 3.5280 1.1356 5.5749 27 6 2.6543 2.2627 6.1290 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6876 -2.0284 34 1 2.0955 3.1410 -1.1385 35 1 3.6751 3.5160 -4.4441 36 1 2.6211 0.4188 2.5302 37 1 0.9431 1.0127 2.5298 38 1 3.2213 2.6226 3.4689 39 1 2.3218 -1.1560 5.3340 40 1 0.4402 -2.7260 5.5652 41 1 -1.2150 -3.5343 6.5623 42 1 -2.6903 -4.0379 5.7036 43 1 -1.1633 -3.8420 4.8098 44 1 -2.3072 0.4836 4.9206 45 1 -0.4204 2.0490 4.7010 46 1 3.5556 0.1995 6.1327 47 1 4.4582 1.4167 5.0812 48 1 3.0096 3.2850 5.9998 49 1 2.1069 2.0681 7.0514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341688154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:16 Heat of formation + Delta-G solvation = -34.993766 kcal Electronic energy + Delta-G solvation = -28933.897724 eV Core-core repulsion = 25054.497030 eV Total energy + Delta-G solvation = -3879.400694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.37882 -40.71583 -39.62789 -37.45611 -36.93388 -34.99292 -34.11518 -32.01036 -31.62101 -30.86637 -29.54422 -28.10387 -27.17891 -24.72140 -24.25102 -23.83396 -23.65799 -22.75003 -20.71070 -19.98614 -19.07094 -18.63245 -18.06854 -17.51717 -17.12602 -16.92058 -16.61747 -16.52145 -16.27748 -15.76602 -15.56382 -14.91467 -14.82223 -14.69137 -14.58519 -14.36447 -14.19694 -14.09055 -13.68145 -13.56232 -13.53434 -13.24925 -13.04875 -12.86160 -12.70002 -12.59229 -12.48467 -12.35485 -12.22090 -12.15585 -11.94451 -11.80477 -11.72289 -11.56386 -11.28815 -10.64549 -10.56305 -9.92860 -9.45251 -9.22383 -9.03749 -8.22402 -6.37585 0.40851 0.41915 1.35779 1.39051 1.49232 1.81518 2.19249 2.40266 2.42132 2.71650 2.80964 3.06883 3.22732 3.60700 3.70921 3.86850 3.95194 4.01764 4.06335 4.12049 4.33676 4.34448 4.38258 4.44857 4.45271 4.48883 4.56052 4.59448 4.63117 4.76053 4.78267 4.80342 4.90924 4.95901 5.01287 5.03556 5.10719 5.20574 5.24578 5.28006 5.35656 5.39125 5.57168 5.66809 5.81418 5.83868 5.97305 6.06278 6.25602 6.48800 6.69799 6.79461 7.27815 7.47772 8.84834 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014129 B = 0.003016 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.240421 B = 9280.497643 C =10329.372213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.602 5.602 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.494 3.506 14 O -0.586 6.586 15 C 0.069 3.931 16 N -0.644 5.644 17 C 0.084 3.916 18 C -0.090 4.090 19 C -0.071 4.071 20 C -0.204 4.204 21 C 0.120 3.880 22 O -0.336 6.336 23 C 0.018 3.982 24 C -0.163 4.163 25 C -0.064 4.064 26 C -0.202 4.202 27 C -0.153 4.153 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.021 0.979 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.349 0.651 39 H 0.142 0.858 40 H 0.152 0.848 41 H 0.066 0.934 42 H 0.116 0.884 43 H 0.064 0.936 44 H 0.134 0.866 45 H 0.125 0.875 46 H 0.115 0.885 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 -16.184 22.571 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.021 4.021 3 N -0.334 5.334 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.283 3.717 14 O -0.466 6.466 15 C -0.063 4.063 16 N -0.275 5.275 17 C -0.008 4.008 18 C -0.091 4.091 19 C -0.089 4.089 20 C -0.222 4.222 21 C 0.074 3.926 22 O -0.250 6.250 23 C -0.076 4.076 24 C -0.182 4.182 25 C -0.083 4.083 26 C -0.241 4.241 27 C -0.190 4.190 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.039 0.961 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.083 0.917 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.133 0.867 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.303 -15.205 22.379 28.301 hybrid contribution 1.696 -0.086 -0.879 1.912 sum -6.608 -15.290 21.500 27.197 Atomic orbital electron populations 1.22134 0.94758 1.03375 1.01521 1.21711 0.95174 0.81454 1.03740 1.48251 1.63914 1.14993 1.06211 1.18691 0.95355 0.91438 0.80305 1.21693 0.97789 1.32013 1.06541 0.92832 1.25882 1.02484 0.94435 0.96418 1.70058 1.37850 1.34193 1.14783 0.85394 0.78869 0.78186 0.78219 1.18761 1.20685 1.19683 1.21197 0.77394 0.86638 0.86492 1.90635 1.47798 1.20293 1.87894 1.21675 1.03585 0.94148 0.86874 1.59996 1.36773 1.31469 0.99285 1.20094 0.94023 0.98226 0.88443 1.18741 0.92298 0.93146 1.04889 1.21015 0.99785 0.91536 0.96592 1.21400 0.91082 1.01654 1.08097 1.19198 0.87160 0.90174 0.96023 1.86058 1.32140 1.20278 1.86560 1.23338 1.04405 0.78350 1.01542 1.20550 1.00302 0.90826 1.06494 1.20840 0.91381 0.99714 0.96338 1.23750 0.94575 1.00905 1.04907 1.23182 1.02411 0.97275 0.96169 0.88727 0.92713 0.94039 0.90657 0.88718 0.96102 0.98691 0.92406 0.90940 0.87269 0.83063 0.84031 0.83083 0.91538 0.86622 0.91688 0.84854 0.85691 0.86661 0.88877 0.88686 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 10.24 71.98 0.74 -3.55 16 2 C 0.10 3.23 5.93 86.38 0.51 3.75 16 3 N -0.60 -26.32 2.46 -826.15 -2.03 -28.35 16 4 C 0.26 14.61 5.16 85.63 0.44 15.05 16 5 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 9 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.49 21.36 7.70 87.66 0.67 22.04 16 14 O -0.59 -31.27 15.64 -3.04 -0.05 -31.32 16 15 C 0.07 2.11 4.08 85.56 0.35 2.46 16 16 N -0.64 -18.99 6.48 -477.86 -3.10 -22.08 16 17 C 0.08 1.84 2.39 2.79 0.01 1.85 16 18 C -0.09 -1.83 3.90 -19.85 -0.08 -1.90 16 19 C -0.07 -1.18 9.25 22.25 0.21 -0.97 16 20 C -0.20 -3.15 9.04 22.36 0.20 -2.95 16 21 C 0.12 2.24 6.69 22.51 0.15 2.39 16 22 O -0.34 -5.91 10.50 -92.51 -0.97 -6.88 16 23 C 0.02 0.16 9.81 113.37 1.11 1.27 16 24 C -0.16 -3.32 9.99 22.37 0.22 -3.10 16 25 C -0.06 -1.39 8.98 22.25 0.20 -1.19 16 26 C -0.20 -3.60 9.46 30.60 0.29 -3.31 16 27 C -0.15 -2.90 10.16 30.60 0.31 -2.59 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.44 7.22 -2.39 -0.02 1.42 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 32 H 0.09 2.40 6.44 -2.39 -0.02 2.39 16 33 H 0.02 1.18 8.07 -2.38 -0.02 1.16 16 34 H -0.01 -0.32 7.42 -2.39 -0.02 -0.34 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 36 H 0.07 1.96 7.38 -2.38 -0.02 1.94 16 37 H 0.11 3.10 5.86 -2.39 -0.01 3.09 16 38 H 0.35 11.22 8.03 -89.70 -0.72 10.50 16 39 H 0.14 1.84 6.71 -2.91 -0.02 1.82 16 40 H 0.15 1.53 6.30 -2.91 -0.02 1.51 16 41 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 42 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 0.48 7.66 -2.38 -0.02 0.46 16 44 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 46 H 0.12 1.60 6.85 -2.39 -0.02 1.58 16 47 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 48 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -76.16 401.57 2.44 -73.72 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.23 Total: 25.79 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 6.04 Total: -1.37 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -4.84 Total: -107.25 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.02 Total: -38.20 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -76.16 2.44 -73.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341688154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.727 kcal (2) G-P(sol) polarization free energy of solvation -76.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds