Wall clock time and date at job start Tue Mar 31 2020 17:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46901 * 109.47021 * 2 1 4 4 C 1.46849 * 111.00081 * 289.69644 * 3 2 1 5 5 C 1.53037 * 109.52310 * 174.15736 * 4 3 2 6 6 C 1.53122 * 109.27549 * 59.18303 * 5 4 3 7 7 H 1.08999 * 109.57146 * 62.28358 * 6 5 4 8 8 N 1.46496 * 109.52240 * 182.43930 * 6 5 4 9 9 C 1.46497 * 120.00293 * 59.68149 * 8 6 5 10 10 S 1.65604 * 120.00167 * 239.68703 * 8 6 5 11 11 O 1.42099 * 104.27846 * 206.07105 * 10 8 6 12 12 O 1.42109 * 104.27309 * 333.92362 * 10 8 6 13 13 C 1.81392 * 104.45064 * 89.99664 * 10 8 6 14 14 C 1.53009 * 109.46991 * 180.02562 * 13 10 8 15 15 C 1.52995 * 109.47006 * 180.02562 * 14 13 10 16 16 C 1.50698 * 109.47058 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99980 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99860 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00173 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47311 * 89.99751 * 20 18 16 22 22 H 1.48501 * 109.47187 * 210.00057 * 20 18 16 23 23 H 1.48498 * 109.46992 * 329.99672 * 20 18 16 24 24 C 1.53119 * 109.16083 * 302.34521 * 6 5 4 25 25 C 1.46847 * 110.99989 * 165.48778 * 3 2 1 26 26 H 1.09002 * 109.46213 * 65.82565 * 25 3 2 27 27 C 1.53004 * 109.46599 * 305.85823 * 25 3 2 28 28 H 1.09005 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47781 * 299.99590 * 1 2 3 30 30 H 1.09005 * 109.47149 * 60.00386 * 1 2 3 31 31 H 1.08997 * 109.47305 * 119.99884 * 2 1 3 32 32 H 1.09000 * 109.47215 * 239.99911 * 2 1 3 33 33 H 1.08993 * 109.46717 * 294.17969 * 4 3 2 34 34 H 1.08999 * 109.45567 * 54.14641 * 4 3 2 35 35 H 1.08999 * 109.50681 * 299.24499 * 5 4 3 36 36 H 1.08999 * 109.53567 * 179.13959 * 5 4 3 37 37 H 1.09003 * 109.47028 * 89.99883 * 9 8 6 38 38 H 1.08997 * 109.47634 * 210.00201 * 9 8 6 39 39 H 1.09006 * 109.47280 * 330.00252 * 9 8 6 40 40 H 1.08998 * 109.47405 * 299.99898 * 13 10 8 41 41 H 1.08996 * 109.47310 * 60.00560 * 13 10 8 42 42 H 1.09005 * 109.46734 * 299.99624 * 14 13 10 43 43 H 1.08996 * 109.46932 * 59.99966 * 14 13 10 44 44 H 1.09003 * 109.47346 * 299.99844 * 15 14 13 45 45 H 1.09002 * 109.47681 * 59.99654 * 15 14 13 46 46 H 0.97003 * 119.99699 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.50352 * 297.71042 * 24 6 5 48 48 H 1.09005 * 109.50040 * 177.59496 * 24 6 5 49 49 H 1.08997 * 109.46936 * 67.28769 * 27 25 3 50 50 H 1.08990 * 109.47152 * 187.29527 * 27 25 3 51 51 H 1.08999 * 109.46290 * 307.29503 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7593 2.0352 -1.2907 5 6 2.1483 3.5129 -1.2066 6 6 3.6325 3.6253 -0.8474 7 1 4.2341 3.1696 -1.6339 8 7 3.9970 5.0374 -0.7083 9 6 3.3225 5.8733 0.2878 10 16 5.1715 5.6887 -1.6772 11 8 5.6891 6.7736 -0.9194 12 8 5.9915 4.5818 -2.0263 13 6 4.2729 6.2985 -3.1302 14 6 5.2610 6.9304 -4.1128 15 6 4.5030 7.4453 -5.3380 16 6 5.4761 8.0682 -6.3055 17 1 6.5298 8.0946 -6.0699 18 6 5.0213 8.6044 -7.4915 19 7 5.8705 9.1485 -8.3356 20 14 3.1988 8.5595 -7.8988 21 1 2.5453 9.7880 -7.3804 22 1 3.0223 8.4887 -9.3716 23 1 2.5800 7.3659 -7.2682 24 6 3.8857 2.8987 0.4764 25 6 3.4463 1.4388 0.3435 26 1 4.0273 0.9546 -0.4414 27 6 3.6789 0.7136 1.6706 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.3482 1.5483 -2.0680 34 1 0.6997 1.9517 -1.5322 35 1 1.5500 4.0036 -0.4389 36 1 1.9695 3.9922 -2.1691 37 1 3.8687 5.8280 1.2300 38 1 3.2907 6.9043 -0.0645 39 1 2.3061 5.5096 0.4392 40 1 3.7598 5.4681 -3.6150 41 1 3.5423 7.0450 -2.8186 42 1 5.7745 7.7609 -3.6281 43 1 5.9914 6.1837 -4.4242 44 1 3.9892 6.6152 -5.8227 45 1 3.7729 8.1922 -5.0262 46 1 5.5505 9.5254 -9.1702 47 1 3.3147 3.3797 1.2705 48 1 4.9483 2.9385 0.7160 49 1 3.4900 -0.3519 1.5403 50 1 4.7099 0.8634 1.9906 51 1 3.0022 1.1128 2.4261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354594605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:48 Heat of formation + Delta-G solvation = -80.818283 kcal Electronic energy + Delta-G solvation = -27973.463114 eV Core-core repulsion = 24227.519271 eV Total energy + Delta-G solvation = -3745.943842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.99533 -37.02229 -36.79471 -35.78171 -34.81825 -33.30838 -32.57781 -32.21930 -29.61876 -28.39261 -27.43788 -26.60098 -24.27336 -23.55972 -22.25870 -21.28422 -20.40544 -19.89797 -18.79404 -17.59049 -16.93576 -16.69189 -16.19824 -15.99261 -15.73134 -15.05710 -14.83123 -14.66825 -14.28536 -14.22133 -14.02485 -13.97980 -13.50990 -12.93105 -12.79708 -12.64723 -12.46837 -12.37329 -12.31285 -12.20186 -12.15810 -12.10644 -11.91905 -11.87219 -11.75051 -11.58699 -11.45274 -11.30590 -11.09717 -10.99579 -10.95861 -10.72900 -10.55642 -10.10573 -9.88531 -9.71241 -9.29144 -9.01454 -8.64285 -8.59766 -6.09420 -4.08708 0.35753 2.65752 3.25546 3.33090 3.35058 3.49163 3.94158 4.19898 4.31860 4.39271 4.45083 4.53976 4.68405 4.71343 4.85680 4.93610 5.00690 5.04288 5.06554 5.14117 5.15168 5.18940 5.22089 5.24324 5.34371 5.37369 5.41532 5.48664 5.52760 5.57926 5.62988 5.65922 5.72354 5.75922 5.78136 5.86057 5.90119 5.96666 6.11789 6.17259 6.25555 6.45084 6.65706 6.77947 6.80282 7.11279 7.25322 7.69988 8.46698 8.95037 9.51642 11.03877 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015688 B = 0.002853 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.328731 B = 9813.590177 C =10903.964193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 N -0.534 5.534 4 C 0.055 3.945 5 C -0.130 4.130 6 C 0.146 3.854 7 H 0.099 0.901 8 N -1.002 6.002 9 C 0.094 3.906 10 S 2.597 3.403 11 O -0.956 6.956 12 O -0.958 6.958 13 C -0.616 4.616 14 C -0.097 4.097 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C -0.115 4.115 25 C 0.081 3.919 26 H 0.044 0.956 27 C -0.147 4.147 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.020 0.980 45 H 0.015 0.985 46 H 0.264 0.736 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.917 -17.855 21.095 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 N -0.260 5.260 4 C -0.074 4.074 5 C -0.169 4.169 6 C 0.039 3.961 7 H 0.116 0.884 8 N -0.838 5.838 9 C -0.051 4.051 10 S 2.694 3.306 11 O -0.946 6.946 12 O -0.948 6.948 13 C -0.747 4.747 14 C -0.137 4.137 15 C -0.042 4.042 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.155 4.155 25 C -0.028 4.028 26 H 0.062 0.938 27 C -0.204 4.204 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.224 -17.466 21.524 29.905 hybrid contribution -1.183 -0.240 -1.383 1.836 sum -12.407 -17.706 20.140 29.548 Atomic orbital electron populations 1.21781 0.94910 1.01344 1.02464 1.22176 0.96105 0.89014 1.01130 1.62029 1.16495 1.16613 1.30847 1.22100 1.01454 0.94152 0.89682 1.22024 0.96050 0.96142 1.02714 1.20964 0.96000 0.80182 0.98907 0.88352 1.57667 1.58545 1.17258 1.50297 1.21414 0.97860 0.93935 0.91938 1.05488 0.74740 0.74323 0.76040 1.93574 1.76765 1.56025 1.68281 1.93562 1.64561 1.51931 1.84783 1.30658 1.13703 1.12015 1.18359 1.21313 0.96206 0.99998 0.96164 1.19525 0.96210 0.96092 0.92423 1.21136 0.95452 1.37830 1.02090 0.90731 1.25030 0.97697 0.94630 0.96070 1.69915 1.34455 1.39201 1.10298 0.86772 0.85984 0.78966 0.77518 1.20204 1.21259 1.19072 1.21942 1.01777 0.93974 0.97759 1.21596 0.87859 0.95967 0.97358 0.93772 1.21915 1.02062 0.99733 0.96739 0.92500 0.91917 0.92732 0.90170 0.94933 0.94518 0.90050 0.90151 0.90791 0.92500 0.91040 0.90872 0.85559 0.85457 0.91041 0.91038 0.96212 0.96623 0.92618 0.90378 0.90853 0.92517 0.91903 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.93 37.15 0.37 -0.51 16 2 C 0.04 0.29 5.47 -3.83 -0.02 0.27 16 3 N -0.53 -4.19 4.46 -226.70 -1.01 -5.20 16 4 C 0.05 0.43 5.30 -3.83 -0.02 0.41 16 5 C -0.13 -1.07 5.40 -26.65 -0.14 -1.22 16 6 C 0.15 1.45 2.52 -67.81 -0.17 1.28 16 7 H 0.10 1.10 6.88 -51.93 -0.36 0.74 16 8 N -1.00 -10.96 3.01 -114.48 -0.34 -11.31 16 9 C 0.09 0.83 9.22 59.85 0.55 1.38 16 10 S 2.60 37.93 5.37 -107.50 -0.58 37.36 16 11 O -0.96 -16.62 17.09 -57.54 -0.98 -17.60 16 12 O -0.96 -16.51 16.57 -57.54 -0.95 -17.46 16 13 C -0.62 -8.98 6.18 37.16 0.23 -8.75 16 14 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 15 C 0.00 -0.09 4.04 -27.89 -0.11 -0.20 16 16 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 17 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 20 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 24 C -0.12 -1.04 4.69 -26.65 -0.12 -1.16 16 25 C 0.08 0.66 2.44 -67.72 -0.17 0.50 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 27 C -0.15 -0.98 8.56 37.16 0.32 -0.66 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.33 6.59 -51.93 -0.34 -0.01 16 31 H 0.08 0.49 5.61 -51.93 -0.29 0.20 16 32 H 0.03 0.23 8.07 -51.93 -0.42 -0.19 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.58 6.42 -51.93 -0.33 0.25 16 35 H 0.08 0.63 6.57 -51.93 -0.34 0.29 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 39 H 0.07 0.50 6.37 -51.93 -0.33 0.17 16 40 H 0.13 1.60 8.14 -51.92 -0.42 1.18 16 41 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 45 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.08 0.67 7.60 -51.93 -0.39 0.28 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.34 6.46 -51.93 -0.34 0.00 16 50 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 51 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -34.51 397.99 -11.02 -45.54 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -9.40 Total: -2.87 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 0.14 Total: -24.24 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.58 Total: -43.48 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.94 Total: -35.06 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 37.93 SS G_CDS: -0.58 Total: 37.36 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.51 -11.02 -45.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354594605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.283 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds