Wall clock time and date at job start Tue Mar 31 2020 19:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46967 * 2 1 4 4 C 1.46504 * 119.99671 * 90.00195 * 3 2 1 5 5 C 1.50701 * 109.47133 * 90.00004 * 4 3 2 6 6 H 1.07999 * 119.99980 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99975 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99730 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47206 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47480 * 299.99656 * 9 7 5 12 12 H 1.48503 * 109.47184 * 60.00165 * 9 7 5 13 13 C 1.34775 * 120.00171 * 269.99936 * 3 2 1 14 14 O 1.21286 * 119.99711 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00073 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47094 * 173.80976 * 15 13 3 17 17 C 1.47904 * 110.99893 * 294.28466 * 16 15 13 18 18 C 1.53988 * 107.05986 * 214.15574 * 17 16 15 19 19 H 1.09006 * 110.30734 * 120.14348 * 18 17 16 20 20 O 1.42899 * 110.31227 * 242.31163 * 18 17 16 21 21 C 1.54595 * 105.13936 * 1.23053 * 18 17 16 22 22 C 1.48537 * 110.99631 * 176.89362 * 16 15 13 23 23 H 1.08994 * 110.66872 * 41.28787 * 22 16 15 24 24 C 1.50696 * 110.66693 * 278.14946 * 22 16 15 25 25 C 1.38233 * 120.00152 * 319.73521 * 24 22 16 26 26 C 1.38235 * 119.99821 * 179.76755 * 25 24 22 27 27 C 1.38236 * 120.00323 * 0.47865 * 26 25 24 28 28 C 1.38240 * 119.99806 * 359.79332 * 27 26 25 29 29 C 1.38235 * 119.99832 * 359.95519 * 28 27 26 30 30 H 1.09000 * 109.46898 * 299.99958 * 1 2 3 31 31 H 1.09001 * 109.47122 * 59.99480 * 1 2 3 32 32 H 1.08995 * 109.46637 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46996 * 240.00588 * 2 1 3 34 34 H 1.08994 * 109.47370 * 120.00249 * 2 1 3 35 35 H 1.08996 * 109.47561 * 329.99898 * 4 3 2 36 36 H 1.09000 * 109.46968 * 209.99929 * 4 3 2 37 37 H 0.97001 * 119.99705 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47257 * 293.80481 * 15 13 3 39 39 H 1.08995 * 109.47406 * 53.80482 * 15 13 3 40 40 H 1.09000 * 109.91517 * 333.51753 * 17 16 15 41 41 H 1.08999 * 109.91079 * 94.60666 * 17 16 15 42 42 H 0.96705 * 113.99933 * 298.54685 * 20 18 17 43 43 H 1.08999 * 110.72578 * 140.31226 * 21 18 17 44 44 H 1.08997 * 110.72127 * 263.59397 * 21 18 17 45 45 H 1.07999 * 119.99889 * 359.97438 * 25 24 22 46 46 H 1.08000 * 120.00044 * 180.24804 * 26 25 24 47 47 H 1.07993 * 120.00384 * 179.76934 * 27 26 25 48 48 H 1.07995 * 120.00261 * 179.97438 * 28 27 26 49 49 H 1.08003 * 120.00317 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6859 1.8350 1.7038 6 1 4.3427 1.2302 1.0962 7 6 4.1495 2.3904 2.8775 8 7 3.3497 3.1272 3.6172 9 14 5.9134 2.0963 3.4170 10 1 6.1611 2.7963 4.7031 11 1 6.1402 0.6396 3.5954 12 1 6.8413 2.6186 2.3819 13 6 2.2430 2.0166 -1.1672 14 8 2.6468 3.1603 -1.1671 15 6 1.9914 1.3065 -2.4722 16 7 2.1666 2.2497 -3.5847 17 6 1.1355 3.3095 -3.5483 18 6 0.8078 3.6713 -5.0088 19 1 -0.2473 3.4917 -5.2154 20 8 1.1396 5.0368 -5.2680 21 6 1.6894 2.7331 -5.8647 22 6 1.9991 1.5667 -4.8930 23 1 1.1661 0.8647 -4.8568 24 6 3.2712 0.8647 -5.2932 25 6 4.4938 1.4708 -5.0726 26 6 5.6609 0.8247 -5.4353 27 6 5.6048 -0.4231 -6.0275 28 6 4.3819 -1.0268 -6.2532 29 6 3.2151 -0.3830 -5.8858 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5818 1.6877 2.0285 36 1 2.0955 3.1410 1.1385 37 1 3.6758 3.5177 4.4431 38 1 2.6972 0.4828 -2.5798 39 1 0.9736 0.9165 -2.4834 40 1 0.2407 2.9400 -3.0474 41 1 1.5203 4.1839 -3.0235 42 1 0.6483 5.6704 -4.7274 43 1 1.1395 2.3745 -6.7348 44 1 2.6073 3.2367 -6.1679 45 1 4.5374 2.4475 -4.6139 46 1 6.6163 1.2964 -5.2593 47 1 6.5164 -0.9262 -6.3142 48 1 4.3380 -2.0014 -6.7162 49 1 2.2596 -0.8547 -6.0617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411957466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:21 Heat of formation + Delta-G solvation = -46.035308 kcal Electronic energy + Delta-G solvation = -29468.177440 eV Core-core repulsion = 25588.297949 eV Total energy + Delta-G solvation = -3879.879491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.27864 -38.94861 -38.18915 -35.93005 -35.17734 -32.85010 -32.10443 -30.95541 -30.83624 -30.08023 -27.86908 -27.40268 -25.70339 -23.12714 -22.99064 -22.53784 -22.15641 -21.00892 -20.27772 -18.29295 -17.48497 -16.82831 -16.52929 -16.27482 -16.10123 -15.73243 -15.25202 -14.82851 -14.63320 -14.34943 -14.17534 -13.75108 -13.47120 -13.40246 -13.26745 -13.09906 -12.94102 -12.82613 -12.55720 -12.23937 -12.04626 -11.81837 -11.80145 -11.66611 -11.27664 -11.21089 -11.13764 -10.92701 -10.91067 -10.73856 -10.68417 -10.50989 -10.11412 -10.08003 -9.61768 -8.90262 -8.89249 -8.70063 -8.40760 -8.30382 -7.62265 -6.01941 -4.06243 1.31678 1.44485 3.33904 3.38123 3.40383 3.48479 3.57812 3.78184 4.07880 4.17813 4.46649 4.56326 4.58812 4.83477 4.85557 4.97152 5.03637 5.11848 5.12761 5.20556 5.28153 5.32854 5.33690 5.40847 5.49784 5.55667 5.59714 5.64519 5.65614 5.72832 5.76201 5.95963 5.99683 6.02130 6.09157 6.17643 6.21649 6.43703 6.44935 6.56977 6.58547 6.88522 6.92322 7.03853 7.14471 7.46166 7.57553 7.58778 7.95020 8.26555 8.46158 8.93707 9.16121 9.58934 11.06102 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.003697 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.876285 B = 7572.245428 C = 8528.374983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.029 3.971 16 N -0.482 5.482 17 C 0.010 3.990 18 C 0.094 3.906 19 H 0.061 0.939 20 O -0.559 6.559 21 C -0.104 4.104 22 C 0.103 3.897 23 H 0.062 0.938 24 C -0.074 4.074 25 C -0.081 4.081 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.127 4.127 29 C -0.117 4.117 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.380 0.620 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.134 0.866 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 -7.556 -19.899 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.130 3.870 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.203 1.203 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.102 4.102 16 N -0.206 5.206 17 C -0.118 4.118 18 C 0.035 3.965 19 H 0.079 0.921 20 O -0.365 6.365 21 C -0.142 4.142 22 C -0.005 4.005 23 H 0.080 0.920 24 C -0.074 4.074 25 C -0.099 4.099 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.145 4.145 29 C -0.135 4.135 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.122 0.878 42 H 0.227 0.773 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.152 0.848 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.220 -6.870 -20.054 21.831 hybrid contribution -0.235 -0.540 0.962 1.128 sum -5.455 -7.410 -19.092 21.194 Atomic orbital electron populations 1.22221 0.96961 1.01332 1.02123 1.21389 0.93340 0.84447 1.02600 1.48254 1.64174 1.13172 1.07698 1.19224 0.96184 0.93528 0.78059 1.21404 0.96947 1.31808 1.06192 0.92569 1.24919 0.97782 0.94924 0.96400 1.69922 1.35725 1.33482 1.14396 0.86576 0.84932 0.78220 0.77804 1.21201 1.20292 1.20150 1.20057 0.78969 0.87132 0.84605 1.90665 1.44537 1.17776 1.86836 1.22302 1.01007 0.95829 0.91108 1.64426 1.46660 1.09715 0.99798 1.23697 0.93459 0.98003 0.96616 1.22680 0.97237 0.82747 0.93862 0.92139 1.86528 1.68624 1.15457 1.65876 1.22517 1.01109 0.93914 0.96690 1.21650 0.94181 0.94766 0.89924 0.92005 1.19545 0.94349 0.94309 0.99229 1.21167 0.91285 1.00648 0.96817 1.21234 0.98570 0.95412 0.98986 1.21147 0.97655 0.95677 0.99524 1.21025 0.92549 0.99817 1.01118 1.20975 0.98294 0.94660 0.99613 0.91984 0.93409 0.92200 0.91991 0.89916 0.95180 0.94013 0.92722 0.88363 0.92624 0.93746 0.87816 0.77276 0.90371 0.89086 0.84820 0.86132 0.86449 0.86382 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.18 37.16 0.38 -1.84 16 2 C 0.11 1.71 5.85 -4.04 -0.02 1.68 16 3 N -0.60 -12.62 2.46 -175.06 -0.43 -13.05 16 4 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 5 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.51 10.52 7.36 -10.99 -0.08 10.44 16 14 O -0.52 -13.10 14.61 5.55 0.08 -13.02 16 15 C 0.03 0.45 3.63 -4.98 -0.02 0.43 16 16 N -0.48 -7.10 4.02 -225.43 -0.91 -8.01 16 17 C 0.01 0.14 5.46 -2.76 -0.02 0.13 16 18 C 0.09 1.06 4.36 -25.38 -0.11 0.95 16 19 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 20 O -0.56 -6.67 13.26 -35.23 -0.47 -7.13 16 21 C -0.10 -1.15 6.21 -24.87 -0.15 -1.30 16 22 C 0.10 1.20 2.49 -66.94 -0.17 1.03 16 23 H 0.06 0.63 7.91 -51.93 -0.41 0.22 16 24 C -0.07 -0.89 4.73 -104.62 -0.49 -1.38 16 25 C -0.08 -1.08 9.12 -39.58 -0.36 -1.44 16 26 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 27 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 28 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 29 C -0.12 -1.22 9.69 -39.58 -0.38 -1.60 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.59 7.12 -51.93 -0.37 0.23 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.84 6.61 -51.93 -0.34 0.50 16 34 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.10 1.48 7.47 -51.93 -0.39 1.10 16 39 H 0.06 0.73 6.65 -51.93 -0.35 0.39 16 40 H 0.04 0.58 7.64 -51.93 -0.40 0.19 16 41 H 0.10 1.74 7.15 -51.93 -0.37 1.37 16 42 H 0.38 3.11 9.11 45.56 0.41 3.52 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.15 7.79 -51.93 -0.40 0.74 16 45 H 0.13 2.01 7.77 -52.49 -0.41 1.60 16 46 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.12 0.97 8.04 -52.48 -0.42 0.55 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -34.52 397.40 -10.26 -44.78 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.17 Total: 4.67 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.07 Total: -5.32 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.60 Total: -47.11 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.39 Total: -20.15 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.52 -10.26 -44.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411957466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.256 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds