Wall clock time and date at job start Tue Mar 31 2020 19:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46967 * 2 1 4 4 C 1.46504 * 119.99671 * 90.00195 * 3 2 1 5 5 C 1.50701 * 109.47133 * 90.00004 * 4 3 2 6 6 H 1.07999 * 119.99980 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99975 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99730 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47206 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47480 * 299.99656 * 9 7 5 12 12 H 1.48503 * 109.47184 * 60.00165 * 9 7 5 13 13 C 1.34775 * 120.00171 * 269.99936 * 3 2 1 14 14 O 1.21286 * 119.99711 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00073 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47094 * 173.80976 * 15 13 3 17 17 C 1.47904 * 110.99893 * 294.28466 * 16 15 13 18 18 C 1.53988 * 107.05986 * 214.15574 * 17 16 15 19 19 H 1.09006 * 110.30734 * 120.14348 * 18 17 16 20 20 O 1.42899 * 110.31227 * 242.31163 * 18 17 16 21 21 C 1.54595 * 105.13936 * 1.23053 * 18 17 16 22 22 C 1.48537 * 110.99631 * 176.89362 * 16 15 13 23 23 H 1.08994 * 110.66872 * 41.28787 * 22 16 15 24 24 C 1.50696 * 110.66693 * 278.14946 * 22 16 15 25 25 C 1.38233 * 120.00152 * 319.73521 * 24 22 16 26 26 C 1.38235 * 119.99821 * 179.76755 * 25 24 22 27 27 C 1.38236 * 120.00323 * 0.47865 * 26 25 24 28 28 C 1.38240 * 119.99806 * 359.79332 * 27 26 25 29 29 C 1.38235 * 119.99832 * 359.95519 * 28 27 26 30 30 H 1.09000 * 109.46898 * 299.99958 * 1 2 3 31 31 H 1.09001 * 109.47122 * 59.99480 * 1 2 3 32 32 H 1.08995 * 109.46637 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46996 * 240.00588 * 2 1 3 34 34 H 1.08994 * 109.47370 * 120.00249 * 2 1 3 35 35 H 1.08996 * 109.47561 * 329.99898 * 4 3 2 36 36 H 1.09000 * 109.46968 * 209.99929 * 4 3 2 37 37 H 0.97001 * 119.99705 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47257 * 293.80481 * 15 13 3 39 39 H 1.08995 * 109.47406 * 53.80482 * 15 13 3 40 40 H 1.09000 * 109.91517 * 333.51753 * 17 16 15 41 41 H 1.08999 * 109.91079 * 94.60666 * 17 16 15 42 42 H 0.96705 * 113.99933 * 298.54685 * 20 18 17 43 43 H 1.08999 * 110.72578 * 140.31226 * 21 18 17 44 44 H 1.08997 * 110.72127 * 263.59397 * 21 18 17 45 45 H 1.07999 * 119.99889 * 359.97438 * 25 24 22 46 46 H 1.08000 * 120.00044 * 180.24804 * 26 25 24 47 47 H 1.07993 * 120.00384 * 179.76934 * 27 26 25 48 48 H 1.07995 * 120.00261 * 179.97438 * 28 27 26 49 49 H 1.08003 * 120.00317 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6859 1.8350 1.7038 6 1 4.3427 1.2302 1.0962 7 6 4.1495 2.3904 2.8775 8 7 3.3497 3.1272 3.6172 9 14 5.9134 2.0963 3.4170 10 1 6.1611 2.7963 4.7031 11 1 6.1402 0.6396 3.5954 12 1 6.8413 2.6186 2.3819 13 6 2.2430 2.0166 -1.1672 14 8 2.6468 3.1603 -1.1671 15 6 1.9914 1.3065 -2.4722 16 7 2.1666 2.2497 -3.5847 17 6 1.1355 3.3095 -3.5483 18 6 0.8078 3.6713 -5.0088 19 1 -0.2473 3.4917 -5.2154 20 8 1.1396 5.0368 -5.2680 21 6 1.6894 2.7331 -5.8647 22 6 1.9991 1.5667 -4.8930 23 1 1.1661 0.8647 -4.8568 24 6 3.2712 0.8647 -5.2932 25 6 4.4938 1.4708 -5.0726 26 6 5.6609 0.8247 -5.4353 27 6 5.6048 -0.4231 -6.0275 28 6 4.3819 -1.0268 -6.2532 29 6 3.2151 -0.3830 -5.8858 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5818 1.6877 2.0285 36 1 2.0955 3.1410 1.1385 37 1 3.6758 3.5177 4.4431 38 1 2.6972 0.4828 -2.5798 39 1 0.9736 0.9165 -2.4834 40 1 0.2407 2.9400 -3.0474 41 1 1.5203 4.1839 -3.0235 42 1 0.6483 5.6704 -4.7274 43 1 1.1395 2.3745 -6.7348 44 1 2.6073 3.2367 -6.1679 45 1 4.5374 2.4475 -4.6139 46 1 6.6163 1.2964 -5.2593 47 1 6.5164 -0.9262 -6.3142 48 1 4.3380 -2.0014 -6.7162 49 1 2.2596 -0.8547 -6.0617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411957466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:20 Heat of formation + Delta-G solvation = -70.240758 kcal Electronic energy + Delta-G solvation = -29469.227067 eV Core-core repulsion = 25588.297949 eV Total energy + Delta-G solvation = -3880.929118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.38638 -40.28379 -39.19456 -37.05711 -36.71272 -34.93766 -33.17519 -31.97491 -31.67695 -31.54935 -29.47640 -28.48329 -27.21578 -24.79970 -24.14349 -23.71196 -23.16171 -22.02321 -21.18429 -19.85821 -18.62854 -18.40639 -17.96267 -17.48686 -17.34897 -17.06701 -16.57446 -16.21038 -15.91599 -15.48948 -15.43260 -14.97376 -14.73042 -14.52067 -14.35998 -14.17007 -14.08822 -13.93791 -13.87626 -13.54366 -13.51315 -13.26269 -13.11347 -12.77670 -12.70220 -12.64174 -12.53491 -12.47590 -12.15680 -12.03156 -11.89582 -11.78130 -11.73569 -11.58235 -10.99785 -10.65528 -10.54255 -9.73492 -9.56220 -9.47719 -9.33151 -8.23550 -6.38106 0.48004 0.59436 1.33867 1.38454 1.45560 1.85932 2.21114 2.39320 2.82908 3.00497 3.05753 3.29640 3.54088 3.65143 3.80157 4.01694 4.04673 4.08055 4.13638 4.22709 4.26150 4.30977 4.37334 4.39627 4.41761 4.50726 4.57357 4.61651 4.72685 4.79833 4.90706 4.92002 4.96671 5.03961 5.07041 5.12810 5.16996 5.20337 5.25425 5.36179 5.56802 5.62391 5.66168 5.71316 5.82424 5.89033 6.04067 6.06602 6.20505 6.69714 6.82612 6.82938 7.28176 7.53704 8.83128 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.003697 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.876285 B = 7572.245428 C = 8528.374983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.542 4.542 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.964 3.036 10 H -0.276 1.276 11 H -0.259 1.259 12 H -0.281 1.281 13 C 0.497 3.503 14 O -0.579 6.579 15 C 0.049 3.951 16 N -0.511 5.511 17 C 0.013 3.987 18 C 0.100 3.900 19 H 0.095 0.905 20 O -0.579 6.579 21 C -0.102 4.102 22 C 0.109 3.891 23 H 0.093 0.907 24 C -0.083 4.083 25 C -0.107 4.107 26 C -0.142 4.142 27 C -0.126 4.126 28 C -0.125 4.125 29 C -0.113 4.113 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.021 0.979 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.393 0.607 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.138 0.862 48 H 0.148 0.852 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -11.084 -22.089 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.145 3.855 5 C -0.581 4.581 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.201 1.201 11 H -0.184 1.184 12 H -0.207 1.207 13 C 0.285 3.715 14 O -0.459 6.459 15 C -0.082 4.082 16 N -0.236 5.236 17 C -0.115 4.115 18 C 0.041 3.959 19 H 0.112 0.888 20 O -0.387 6.387 21 C -0.140 4.140 22 C 0.002 3.998 23 H 0.111 0.889 24 C -0.083 4.083 25 C -0.125 4.125 26 C -0.160 4.160 27 C -0.144 4.144 28 C -0.143 4.143 29 C -0.131 4.131 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.243 0.757 43 H 0.127 0.873 44 H 0.083 0.917 45 H 0.118 0.882 46 H 0.138 0.862 47 H 0.156 0.844 48 H 0.166 0.834 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.200 -10.441 -22.257 25.354 hybrid contribution 0.074 0.582 1.627 1.730 sum -6.125 -9.859 -20.630 23.671 Atomic orbital electron populations 1.22140 0.94364 1.03551 1.01599 1.21726 0.95439 0.81451 1.03688 1.48283 1.64277 1.15069 1.06157 1.18632 0.95084 0.91371 0.80416 1.21672 0.97983 1.31971 1.06478 0.93258 1.25819 1.02246 0.94460 0.96421 1.70039 1.37753 1.34141 1.14817 0.85521 0.79177 0.79092 0.77350 1.20115 1.18373 1.20655 1.21113 0.77496 0.86702 0.86185 1.90639 1.46932 1.20493 1.87790 1.22115 1.02979 0.95119 0.88016 1.64291 1.47805 1.10446 1.01031 1.23598 0.93123 0.96458 0.98363 1.22776 0.98994 0.82335 0.91792 0.88771 1.86490 1.69558 1.16350 1.66314 1.22549 1.00316 0.93557 0.97536 1.21734 0.94965 0.95220 0.87898 0.88934 1.19659 0.93712 0.95192 0.99781 1.21038 0.93000 0.99942 0.98563 1.21361 0.98238 0.96504 0.99863 1.21437 0.99231 0.94925 0.98810 1.21436 0.91972 1.00796 1.00083 1.21299 0.99894 0.93612 0.98325 0.94251 0.92235 0.88490 0.88643 0.91070 0.96065 0.98768 0.92406 0.87493 0.89168 0.92960 0.92187 0.75747 0.87281 0.91673 0.88175 0.86185 0.84391 0.83395 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.18 71.98 0.73 -3.06 16 2 C 0.10 3.04 5.85 86.38 0.51 3.55 16 3 N -0.61 -26.09 2.46 -826.15 -2.03 -28.12 16 4 C 0.27 14.71 5.16 85.63 0.44 15.15 16 5 C -0.54 -32.19 9.39 25.60 0.24 -31.95 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.56 5.46 84.66 0.46 1.03 16 8 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 9 Si 0.96 46.15 29.54 68.60 2.03 48.18 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 13 C 0.50 21.23 7.36 87.66 0.64 21.88 16 14 O -0.58 -31.07 14.61 -3.05 -0.04 -31.12 16 15 C 0.05 1.43 3.63 85.55 0.31 1.75 16 16 N -0.51 -14.91 4.02 -867.12 -3.49 -18.40 16 17 C 0.01 0.36 5.46 86.44 0.47 0.83 16 18 C 0.10 2.11 4.36 31.47 0.14 2.25 16 19 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 20 O -0.58 -13.87 13.26 -148.98 -1.98 -15.85 16 21 C -0.10 -2.05 6.21 31.80 0.20 -1.85 16 22 C 0.11 2.28 2.49 44.51 0.11 2.39 16 23 H 0.09 1.40 7.91 -2.39 -0.02 1.38 16 24 C -0.08 -1.85 4.73 -19.87 -0.09 -1.94 16 25 C -0.11 -2.94 9.12 22.27 0.20 -2.73 16 26 C -0.14 -3.42 10.05 22.27 0.22 -3.20 16 27 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 28 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 29 C -0.11 -1.92 9.69 22.27 0.22 -1.70 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.29 7.12 -2.39 -0.02 1.27 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 2.29 6.61 -2.39 -0.02 2.28 16 34 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 35 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 36 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.11 2.99 7.47 -2.39 -0.02 2.97 16 39 H 0.09 2.03 6.65 -2.39 -0.02 2.01 16 40 H 0.05 1.33 7.64 -2.39 -0.02 1.31 16 41 H 0.06 2.19 7.15 -2.39 -0.02 2.17 16 42 H 0.39 6.64 9.11 -74.05 -0.67 5.96 16 43 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 1.66 7.79 -2.39 -0.02 1.64 16 45 H 0.10 3.34 7.77 -2.91 -0.02 3.32 16 46 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 47 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 48 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 49 H 0.15 1.59 8.04 -2.91 -0.02 1.56 16 Total: -1.00 -81.56 397.40 0.29 -81.27 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.26 Total: 22.57 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 5.25 Total: -1.63 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -5.23 Total: -103.44 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -2.02 Total: -46.96 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -81.56 0.29 -81.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411957466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.034 kcal (2) G-P(sol) polarization free energy of solvation -81.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds