Wall clock time and date at job start Tue Mar 31 2020 16:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46848 * 2 1 4 4 N 1.46498 * 109.46950 * 119.99646 * 2 1 3 5 5 C 1.39668 * 120.00436 * 274.99932 * 4 2 1 6 6 C 1.38912 * 120.07293 * 359.72894 * 5 4 2 7 7 C 1.38111 * 119.92247 * 179.76860 * 6 5 4 8 8 C 1.38278 * 120.07625 * 0.50852 * 7 6 5 9 9 C 1.50701 * 119.92422 * 179.76917 * 8 7 6 10 10 H 1.09004 * 110.80281 * 183.60433 * 9 8 7 11 11 C 1.54805 * 110.90852 * 59.97517 * 9 8 7 12 12 C 1.54103 * 104.18754 * 220.91926 * 11 9 8 13 13 O 1.43739 * 107.29254 * 357.97004 * 12 11 9 14 14 C 1.44377 * 106.97688 * 26.51308 * 13 12 11 15 15 C 1.38291 * 120.15116 * 359.74158 * 8 7 6 16 16 C 1.38108 * 120.07163 * 0.02562 * 15 8 7 17 17 C 1.50693 * 109.47218 * 239.99937 * 2 1 3 18 18 O 1.21281 * 120.00445 * 254.25159 * 17 2 1 19 19 N 1.34781 * 120.00122 * 74.24870 * 17 2 1 20 20 C 1.46506 * 119.99702 * 3.62999 * 19 17 2 21 21 C 1.46503 * 120.00204 * 183.63656 * 19 17 2 22 22 C 1.50695 * 109.47189 * 89.99801 * 21 19 17 23 23 H 1.08002 * 120.00184 * 359.97438 * 22 21 19 24 24 C 1.37881 * 119.99973 * 180.02562 * 22 21 19 25 25 N 1.31517 * 119.99792 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99977 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47101 * 59.99932 * 26 24 22 28 28 H 1.48497 * 109.46810 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47229 * 299.99775 * 26 24 22 30 30 H 1.09006 * 109.46932 * 295.99736 * 1 2 3 31 31 H 1.09005 * 109.46849 * 176.00115 * 1 2 3 32 32 H 1.08996 * 109.47110 * 56.00241 * 1 2 3 33 33 H 0.97004 * 119.99977 * 95.00505 * 4 2 1 34 34 H 1.08000 * 120.04156 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.96099 * 180.24968 * 7 6 5 36 36 H 1.09001 * 110.49407 * 339.60068 * 11 9 8 37 37 H 1.09011 * 110.48843 * 102.24515 * 11 9 8 38 38 H 1.09002 * 109.87284 * 117.39581 * 12 11 9 39 39 H 1.09002 * 109.88027 * 238.54403 * 12 11 9 40 40 H 1.09000 * 110.62126 * 201.43698 * 14 13 12 41 41 H 1.09007 * 110.62068 * 78.43555 * 14 13 12 42 42 H 1.07996 * 119.96359 * 179.97438 * 15 8 7 43 43 H 1.07993 * 120.03508 * 179.97438 * 16 15 8 44 44 H 1.09000 * 109.46772 * 84.67236 * 20 19 17 45 45 H 1.08998 * 109.46937 * 204.67060 * 20 19 17 46 46 H 1.09000 * 109.46917 * 324.67178 * 20 19 17 47 47 H 1.08998 * 109.47029 * 209.99877 * 21 19 17 48 48 H 1.09001 * 109.46540 * 329.99533 * 21 19 17 49 49 H 0.96999 * 119.99708 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1517 0.0062 2.3993 6 6 1.8272 1.3554 2.4620 7 6 1.9558 2.0402 3.6545 8 6 2.4169 1.3869 4.7826 9 6 2.5608 2.1387 6.0807 10 1 2.9934 1.5009 6.8516 11 6 1.1989 2.7141 6.5398 12 6 1.5419 4.1206 7.0679 13 8 2.9659 4.2828 6.9581 14 6 3.4066 3.4228 5.8854 15 6 2.7458 0.0450 4.7224 16 6 2.6151 -0.6470 3.5344 17 6 2.0324 -0.7104 -1.2304 18 8 2.5033 -1.8242 -1.1378 19 7 1.9583 -0.1080 -2.4338 20 6 1.4633 1.2672 -2.5354 21 6 2.3726 -0.8284 -3.6404 22 6 1.1905 -1.5639 -4.2170 23 1 0.2270 -1.5015 -3.7330 24 6 1.3391 -2.3176 -5.3620 25 7 2.5125 -2.3941 -5.9512 26 14 -0.1260 -3.2299 -6.0765 27 1 -1.1936 -2.2576 -6.4230 28 1 0.2940 -3.9600 -7.2995 29 1 -0.6432 -4.1969 -5.0752 30 1 -0.3633 0.4505 0.9237 31 1 -0.3633 -1.0252 -0.0717 32 1 -0.3633 0.5746 -0.8520 33 1 2.2491 -1.6317 1.1527 34 1 1.4716 1.8676 1.5802 35 1 1.6998 3.0883 3.7049 36 1 0.5094 2.7803 5.6982 37 1 0.7742 2.1011 7.3348 38 1 1.0354 4.8758 6.4669 39 1 1.2381 4.2091 8.1110 40 1 4.4693 3.2009 5.9832 41 1 3.1959 3.8776 4.9175 42 1 3.1061 -0.4621 5.6052 43 1 2.8725 -1.6947 3.4879 44 1 2.2817 1.9625 -2.3485 45 1 1.0637 1.4365 -3.5352 46 1 0.6764 1.4254 -1.7979 47 1 2.7524 -0.1184 -4.3750 48 1 3.1560 -1.5423 -3.3861 49 1 2.6171 -2.9245 -6.7565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842147043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:43 Heat of formation + Delta-G solvation = -52.045302 kcal Electronic energy + Delta-G solvation = -28106.999854 eV Core-core repulsion = 24226.859750 eV Total energy + Delta-G solvation = -3880.140104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.36956 -39.64151 -38.63866 -35.91214 -34.97452 -33.23248 -32.60247 -31.11890 -30.77118 -29.65073 -27.83927 -27.26121 -26.09549 -24.21862 -23.52239 -22.97015 -22.49238 -21.40788 -20.33837 -18.77326 -17.84293 -16.78794 -16.65087 -16.57951 -16.19283 -15.74965 -15.41225 -14.95796 -14.90940 -14.69198 -14.40756 -14.03751 -13.84215 -13.57801 -13.53389 -13.41107 -13.08204 -12.81368 -12.61091 -12.45067 -12.19903 -12.07124 -11.86487 -11.81682 -11.61489 -11.45467 -11.24900 -11.22637 -11.14929 -10.95035 -10.74269 -10.63102 -10.23005 -10.03871 -9.91854 -9.72966 -9.05531 -8.97382 -8.50012 -7.77942 -7.34328 -6.11050 -4.16611 1.38534 1.50206 3.17893 3.26699 3.28232 3.31829 3.36312 3.61507 3.77917 3.95161 4.37706 4.38013 4.44176 4.69272 4.75937 4.82668 4.83743 4.90633 4.97533 5.09036 5.11123 5.21692 5.23372 5.34276 5.37980 5.41349 5.42162 5.51143 5.54803 5.64033 5.66136 5.71284 5.80298 5.81646 5.84469 5.97107 6.07255 6.26214 6.28810 6.34449 6.55576 6.61174 6.77638 6.93499 7.31330 7.35657 7.42730 7.80558 7.84356 8.14533 8.26347 8.77258 8.92663 9.48563 10.96971 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.029397 B = 0.002041 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.256444 B =13712.744931 C =13880.080063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 H 0.095 0.905 4 N -0.724 5.724 5 C 0.230 3.770 6 C -0.201 4.201 7 C -0.064 4.064 8 C -0.148 4.148 9 C -0.069 4.069 10 H 0.088 0.912 11 C -0.150 4.150 12 C 0.045 3.955 13 O -0.382 6.382 14 C 0.052 3.948 15 C -0.062 4.062 16 C -0.196 4.196 17 C 0.503 3.497 18 O -0.539 6.539 19 N -0.596 5.596 20 C 0.072 3.928 21 C 0.245 3.755 22 C -0.530 4.530 23 H 0.057 0.943 24 C 0.061 3.939 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.410 0.590 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.034 0.966 48 H 0.045 0.955 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 12.560 22.689 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.113 0.887 4 N -0.354 5.354 5 C 0.125 3.875 6 C -0.224 4.224 7 C -0.083 4.083 8 C -0.150 4.150 9 C -0.088 4.088 10 H 0.106 0.894 11 C -0.188 4.188 12 C -0.031 4.031 13 O -0.301 6.301 14 C -0.024 4.024 15 C -0.080 4.080 16 C -0.218 4.218 17 C 0.289 3.711 18 O -0.416 6.416 19 N -0.327 5.327 20 C -0.071 4.071 21 C 0.126 3.874 22 C -0.568 4.568 23 H 0.075 0.925 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.202 1.202 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.248 0.752 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.389 12.124 22.471 25.644 hybrid contribution -0.933 -1.017 -0.808 1.599 sum -3.322 11.107 21.662 24.569 Atomic orbital electron populations 1.22261 0.93664 1.03700 1.02664 1.20790 0.95190 0.97061 0.84970 0.88719 1.44607 1.71720 1.13203 1.05862 1.17872 0.92421 0.91367 0.85876 1.20653 1.09772 0.93107 0.98840 1.20638 0.97007 0.98912 0.91755 1.19198 1.07107 0.94299 0.94383 1.21509 0.95428 0.96491 0.95352 0.89390 1.23082 0.97803 0.96037 1.01856 1.23178 0.82319 0.96195 1.01449 1.88864 1.21336 1.65600 1.54266 1.23736 0.99480 0.88434 0.90788 1.20700 0.97210 0.93313 0.96816 1.20575 1.08628 1.00393 0.92249 1.20233 0.79799 0.86629 0.84488 1.90656 1.45845 1.19551 1.85590 1.48101 1.62688 1.13959 1.07973 1.21870 0.98412 0.83278 1.03578 1.19342 0.96403 0.92057 0.79612 1.21366 0.95811 1.29989 1.09666 0.92480 1.24947 0.96127 0.96312 0.96716 1.69922 1.22660 1.40633 1.19971 0.86544 0.82461 0.79934 0.78395 1.20198 1.21123 1.20185 0.91501 0.91530 0.90585 0.75174 0.86025 0.86537 0.90175 0.90472 0.92435 0.90027 0.88873 0.91718 0.86391 0.86127 0.93537 0.90236 0.91946 0.94803 0.93735 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.18 37.16 0.34 -1.75 16 2 C 0.13 1.87 1.85 -69.09 -0.13 1.74 16 3 H 0.10 1.19 5.80 -51.93 -0.30 0.89 16 4 N -0.72 -10.22 5.19 -53.29 -0.28 -10.50 16 5 C 0.23 2.86 6.64 -83.79 -0.56 2.30 16 6 C -0.20 -2.22 8.87 -39.38 -0.35 -2.57 16 7 C -0.06 -0.62 8.19 -39.61 -0.32 -0.95 16 8 C -0.15 -1.38 4.95 -104.59 -0.52 -1.90 16 9 C -0.07 -0.55 3.34 -89.77 -0.30 -0.85 16 10 H 0.09 0.66 7.95 -51.93 -0.41 0.25 16 11 C -0.15 -1.04 6.50 -25.20 -0.16 -1.21 16 12 C 0.05 0.33 7.70 37.73 0.29 0.62 16 13 O -0.38 -3.75 11.52 -35.23 -0.41 -4.15 16 14 C 0.05 0.43 7.10 38.21 0.27 0.71 16 15 C -0.06 -0.61 9.68 -39.61 -0.38 -0.99 16 16 C -0.20 -2.23 9.90 -39.38 -0.39 -2.62 16 17 C 0.50 10.00 6.97 -10.99 -0.08 9.92 16 18 O -0.54 -12.97 15.42 5.56 0.09 -12.89 16 19 N -0.60 -12.08 2.86 -182.95 -0.52 -12.60 16 20 C 0.07 1.07 9.85 59.85 0.59 1.66 16 21 C 0.24 6.25 5.16 -5.19 -0.03 6.22 16 22 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 23 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 24 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 25 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 26 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.90 5.83 -51.93 -0.30 0.60 16 33 H 0.41 6.27 7.73 -40.82 -0.32 5.96 16 34 H 0.12 1.23 6.21 -52.49 -0.33 0.90 16 35 H 0.12 0.93 7.23 -52.48 -0.38 0.55 16 36 H 0.08 0.56 7.21 -51.93 -0.37 0.18 16 37 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.52 6.69 -51.92 -0.35 0.17 16 42 H 0.12 0.94 7.98 -52.49 -0.42 0.52 16 43 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 46 H 0.06 0.74 4.58 -51.93 -0.24 0.50 16 47 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 48 H 0.04 1.29 7.37 -51.93 -0.38 0.91 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -32.48 391.39 -9.19 -41.67 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.55 Total: 4.55 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.14 Total: -3.00 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.06 Total: -48.53 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.32 Total: -17.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.48 -9.19 -41.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842147043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.374 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds