Wall clock time and date at job start Tue Mar 31 2020 16:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46848 * 2 1 4 4 N 1.46498 * 109.46950 * 119.99646 * 2 1 3 5 5 C 1.39668 * 120.00436 * 274.99932 * 4 2 1 6 6 C 1.38912 * 120.07293 * 359.72894 * 5 4 2 7 7 C 1.38111 * 119.92247 * 179.76860 * 6 5 4 8 8 C 1.38278 * 120.07625 * 0.50852 * 7 6 5 9 9 C 1.50701 * 119.92422 * 179.76917 * 8 7 6 10 10 H 1.09004 * 110.80281 * 183.60433 * 9 8 7 11 11 C 1.54805 * 110.90852 * 59.97517 * 9 8 7 12 12 C 1.54103 * 104.18754 * 220.91926 * 11 9 8 13 13 O 1.43739 * 107.29254 * 357.97004 * 12 11 9 14 14 C 1.44377 * 106.97688 * 26.51308 * 13 12 11 15 15 C 1.38291 * 120.15116 * 359.74158 * 8 7 6 16 16 C 1.38108 * 120.07163 * 0.02562 * 15 8 7 17 17 C 1.50693 * 109.47218 * 239.99937 * 2 1 3 18 18 O 1.21281 * 120.00445 * 254.25159 * 17 2 1 19 19 N 1.34781 * 120.00122 * 74.24870 * 17 2 1 20 20 C 1.46506 * 119.99702 * 3.62999 * 19 17 2 21 21 C 1.46503 * 120.00204 * 183.63656 * 19 17 2 22 22 C 1.50695 * 109.47189 * 89.99801 * 21 19 17 23 23 H 1.08002 * 120.00184 * 359.97438 * 22 21 19 24 24 C 1.37881 * 119.99973 * 180.02562 * 22 21 19 25 25 N 1.31517 * 119.99792 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99977 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47101 * 59.99932 * 26 24 22 28 28 H 1.48497 * 109.46810 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47229 * 299.99775 * 26 24 22 30 30 H 1.09006 * 109.46932 * 295.99736 * 1 2 3 31 31 H 1.09005 * 109.46849 * 176.00115 * 1 2 3 32 32 H 1.08996 * 109.47110 * 56.00241 * 1 2 3 33 33 H 0.97004 * 119.99977 * 95.00505 * 4 2 1 34 34 H 1.08000 * 120.04156 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.96099 * 180.24968 * 7 6 5 36 36 H 1.09001 * 110.49407 * 339.60068 * 11 9 8 37 37 H 1.09011 * 110.48843 * 102.24515 * 11 9 8 38 38 H 1.09002 * 109.87284 * 117.39581 * 12 11 9 39 39 H 1.09002 * 109.88027 * 238.54403 * 12 11 9 40 40 H 1.09000 * 110.62126 * 201.43698 * 14 13 12 41 41 H 1.09007 * 110.62068 * 78.43555 * 14 13 12 42 42 H 1.07996 * 119.96359 * 179.97438 * 15 8 7 43 43 H 1.07993 * 120.03508 * 179.97438 * 16 15 8 44 44 H 1.09000 * 109.46772 * 84.67236 * 20 19 17 45 45 H 1.08998 * 109.46937 * 204.67060 * 20 19 17 46 46 H 1.09000 * 109.46917 * 324.67178 * 20 19 17 47 47 H 1.08998 * 109.47029 * 209.99877 * 21 19 17 48 48 H 1.09001 * 109.46540 * 329.99533 * 21 19 17 49 49 H 0.96999 * 119.99708 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1517 0.0062 2.3993 6 6 1.8272 1.3554 2.4620 7 6 1.9558 2.0402 3.6545 8 6 2.4169 1.3869 4.7826 9 6 2.5608 2.1387 6.0807 10 1 2.9934 1.5009 6.8516 11 6 1.1989 2.7141 6.5398 12 6 1.5419 4.1206 7.0679 13 8 2.9659 4.2828 6.9581 14 6 3.4066 3.4228 5.8854 15 6 2.7458 0.0450 4.7224 16 6 2.6151 -0.6470 3.5344 17 6 2.0324 -0.7104 -1.2304 18 8 2.5033 -1.8242 -1.1378 19 7 1.9583 -0.1080 -2.4338 20 6 1.4633 1.2672 -2.5354 21 6 2.3726 -0.8284 -3.6404 22 6 1.1905 -1.5639 -4.2170 23 1 0.2270 -1.5015 -3.7330 24 6 1.3391 -2.3176 -5.3620 25 7 2.5125 -2.3941 -5.9512 26 14 -0.1260 -3.2299 -6.0765 27 1 -1.1936 -2.2576 -6.4230 28 1 0.2940 -3.9600 -7.2995 29 1 -0.6432 -4.1969 -5.0752 30 1 -0.3633 0.4505 0.9237 31 1 -0.3633 -1.0252 -0.0717 32 1 -0.3633 0.5746 -0.8520 33 1 2.2491 -1.6317 1.1527 34 1 1.4716 1.8676 1.5802 35 1 1.6998 3.0883 3.7049 36 1 0.5094 2.7803 5.6982 37 1 0.7742 2.1011 7.3348 38 1 1.0354 4.8758 6.4669 39 1 1.2381 4.2091 8.1110 40 1 4.4693 3.2009 5.9832 41 1 3.1959 3.8776 4.9175 42 1 3.1061 -0.4621 5.6052 43 1 2.8725 -1.6947 3.4879 44 1 2.2817 1.9625 -2.3485 45 1 1.0637 1.4365 -3.5352 46 1 0.6764 1.4254 -1.7979 47 1 2.7524 -0.1184 -4.3750 48 1 3.1560 -1.5423 -3.3861 49 1 2.6171 -2.9245 -6.7565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842147043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:41 Heat of formation + Delta-G solvation = -72.409499 kcal Electronic energy + Delta-G solvation = -28107.882912 eV Core-core repulsion = 24226.859750 eV Total energy + Delta-G solvation = -3881.023162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.32451 -40.77232 -39.55091 -37.02086 -36.60426 -34.82243 -33.88341 -31.99449 -31.65178 -30.37486 -29.61080 -28.11164 -27.49679 -25.79369 -24.28157 -24.22104 -23.23296 -22.45807 -21.06886 -20.15022 -18.93712 -18.69808 -17.71261 -17.51230 -17.23387 -16.85716 -16.65208 -16.29673 -16.08617 -15.72007 -15.59338 -15.12683 -14.83568 -14.52125 -14.44719 -14.25879 -14.14323 -14.01559 -13.94020 -13.57928 -13.38699 -13.31889 -13.20099 -13.07069 -12.87206 -12.64282 -12.46008 -12.38699 -12.28492 -12.20702 -11.95207 -11.84749 -11.73820 -11.39847 -10.88323 -10.66202 -10.63433 -10.56608 -9.77067 -9.48597 -8.26981 -8.24120 -6.39652 0.58740 0.68692 1.35804 1.39699 1.46952 1.67486 2.04389 2.36921 2.63208 2.91995 3.05218 3.09975 3.51417 3.78982 3.81666 3.91836 4.08476 4.09391 4.12419 4.20322 4.25247 4.29921 4.40029 4.43801 4.56806 4.62081 4.68255 4.71530 4.75877 4.85014 4.87828 4.92602 4.94193 4.95828 4.99896 5.13523 5.17679 5.19810 5.23064 5.24219 5.45929 5.51140 5.54790 5.77891 5.84452 5.96501 6.00210 6.02314 6.36858 6.64943 6.70017 6.75992 7.22016 7.36852 8.82373 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.029397 B = 0.002041 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.256444 B =13712.744931 C =13880.080063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.122 0.878 4 N -0.736 5.736 5 C 0.208 3.792 6 C -0.205 4.205 7 C -0.064 4.064 8 C -0.140 4.140 9 C -0.067 4.067 10 H 0.092 0.908 11 C -0.146 4.146 12 C 0.041 3.959 13 O -0.404 6.404 14 C 0.050 3.950 15 C -0.066 4.066 16 C -0.208 4.208 17 C 0.493 3.507 18 O -0.593 6.593 19 N -0.602 5.602 20 C 0.066 3.934 21 C 0.258 3.742 22 C -0.542 4.542 23 H 0.057 0.943 24 C 0.006 3.994 25 N -0.928 5.928 26 Si 0.968 3.032 27 H -0.258 1.258 28 H -0.280 1.280 29 H -0.278 1.278 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.400 0.600 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.026 0.974 48 H -0.004 1.004 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.760 14.600 24.245 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.139 0.861 4 N -0.366 5.366 5 C 0.105 3.895 6 C -0.227 4.227 7 C -0.083 4.083 8 C -0.142 4.142 9 C -0.086 4.086 10 H 0.111 0.889 11 C -0.183 4.183 12 C -0.035 4.035 13 O -0.324 6.324 14 C -0.026 4.026 15 C -0.085 4.085 16 C -0.231 4.231 17 C 0.281 3.719 18 O -0.474 6.474 19 N -0.333 5.333 20 C -0.076 4.076 21 C 0.137 3.863 22 C -0.581 4.581 23 H 0.075 0.925 24 C -0.193 4.193 25 N -0.568 5.568 26 Si 0.792 3.208 27 H -0.183 1.183 28 H -0.205 1.205 29 H -0.204 1.204 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.236 0.764 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.153 0.847 43 H 0.136 0.864 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.116 0.884 47 H 0.044 0.956 48 H 0.015 0.985 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.361 14.239 24.064 28.299 hybrid contribution -0.254 -1.595 -1.180 2.001 sum -4.615 12.643 22.884 26.548 Atomic orbital electron populations 1.22244 0.92044 1.02782 1.04513 1.20708 0.96082 0.97172 0.82279 0.86053 1.44609 1.72859 1.12796 1.06348 1.18065 0.93886 0.92122 0.85394 1.20846 1.09535 0.92455 0.99864 1.20878 0.96350 0.99826 0.91223 1.19406 1.05718 0.94093 0.95018 1.21503 0.96143 0.96266 0.94680 0.88919 1.23063 0.97141 0.95903 1.02220 1.23328 0.81228 0.96571 1.02410 1.88845 1.22777 1.66024 1.54725 1.23787 0.99731 0.88419 0.90687 1.20936 0.96939 0.93753 0.96858 1.20726 1.08950 1.00643 0.92766 1.21285 0.78626 0.86245 0.85785 1.90620 1.48085 1.22192 1.86550 1.48098 1.62710 1.15826 1.06674 1.22196 1.00420 0.80432 1.04557 1.18796 0.94719 0.91308 0.81468 1.21658 0.96203 1.30360 1.09871 0.92516 1.25885 0.99054 0.97153 0.97200 1.70049 1.24793 1.41469 1.20458 0.85464 0.79158 0.78719 0.77460 1.18256 1.20527 1.20357 0.88933 0.93805 0.89335 0.76422 0.84818 0.84516 0.89928 0.89582 0.91629 0.89002 0.88683 0.91393 0.84670 0.86378 0.90824 0.90806 0.88391 0.95635 0.98538 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.18 71.98 0.66 -3.01 16 2 C 0.15 4.06 1.85 44.24 0.08 4.14 16 3 H 0.12 2.69 5.80 -2.39 -0.01 2.68 16 4 N -0.74 -20.65 5.19 -322.52 -1.68 -22.33 16 5 C 0.21 4.95 6.64 38.22 0.25 5.21 16 6 C -0.20 -3.99 8.87 22.40 0.20 -3.79 16 7 C -0.06 -1.05 8.19 22.25 0.18 -0.87 16 8 C -0.14 -2.28 4.95 -19.84 -0.10 -2.38 16 9 C -0.07 -0.89 3.34 -10.24 -0.03 -0.93 16 10 H 0.09 1.16 7.95 -2.38 -0.02 1.14 16 11 C -0.15 -1.61 6.50 31.58 0.21 -1.40 16 12 C 0.04 0.49 7.70 72.36 0.56 1.05 16 13 O -0.40 -7.12 11.52 -148.98 -1.72 -8.84 16 14 C 0.05 0.72 7.10 72.66 0.52 1.24 16 15 C -0.07 -1.20 9.68 22.25 0.22 -0.98 16 16 C -0.21 -4.61 9.90 22.40 0.22 -4.39 16 17 C 0.49 19.92 6.97 87.65 0.61 20.53 16 18 O -0.59 -30.12 15.42 -3.03 -0.05 -30.16 16 19 N -0.60 -24.66 2.86 -851.12 -2.43 -27.09 16 20 C 0.07 1.81 9.85 127.77 1.26 3.07 16 21 C 0.26 13.76 5.16 85.63 0.44 14.20 16 22 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 23 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 24 C 0.01 0.35 5.46 84.66 0.46 0.82 16 25 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 26 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 27 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 29 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 30 H 0.09 1.72 7.82 -2.38 -0.02 1.70 16 31 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.09 1.82 5.83 -2.39 -0.01 1.80 16 33 H 0.40 12.79 7.73 -92.71 -0.72 12.07 16 34 H 0.13 2.21 6.21 -2.91 -0.02 2.19 16 35 H 0.14 1.67 7.23 -2.91 -0.02 1.65 16 36 H 0.08 0.88 7.21 -2.39 -0.02 0.87 16 37 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 0.92 6.69 -2.38 -0.02 0.91 16 42 H 0.14 1.90 7.98 -2.91 -0.02 1.88 16 43 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 45 H 0.07 2.14 8.03 -2.39 -0.02 2.12 16 46 H 0.10 1.99 4.58 -2.39 -0.01 1.98 16 47 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 48 H 0.00 -0.22 7.37 -2.39 -0.02 -0.24 16 49 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -73.75 391.39 2.66 -71.09 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.24 Total: 24.48 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.97 Total: 2.09 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -3.82 Total: -104.95 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.76 Total: -39.00 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -73.75 2.66 -71.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842147043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.321 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds