Wall clock time and date at job start Tue Mar 31 2020 16:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46867 * 2 1 4 4 O 1.42901 * 109.46476 * 119.99475 * 2 1 3 5 5 C 1.42896 * 114.00195 * 269.99618 * 4 2 1 6 6 C 1.50702 * 109.47235 * 180.02562 * 5 4 2 7 7 C 1.38238 * 119.99843 * 269.72957 * 6 5 4 8 8 C 1.38235 * 119.99230 * 179.74619 * 7 6 5 9 9 C 1.38235 * 120.00513 * 0.54920 * 8 7 6 10 10 C 1.38231 * 119.99600 * 359.70375 * 9 8 7 11 11 C 1.38229 * 119.99861 * 90.00332 * 6 5 4 12 12 C 1.50699 * 109.47078 * 239.99473 * 2 1 3 13 13 O 1.21279 * 119.99771 * 245.00176 * 12 2 1 14 14 N 1.34768 * 119.99897 * 65.00350 * 12 2 1 15 15 C 1.46501 * 120.00137 * 179.97438 * 14 12 2 16 16 C 1.52997 * 110.88668 * 297.57715 * 15 14 12 17 17 C 1.55157 * 111.00716 * 173.64774 * 15 14 12 18 18 C 1.54334 * 103.02095 * 277.23316 * 17 15 14 19 19 N 1.47014 * 107.26782 * 338.14225 * 18 17 15 20 20 C 1.36945 * 125.64902 * 178.84833 * 19 18 17 21 21 H 1.07997 * 119.99756 * 179.68982 * 20 19 18 22 22 C 1.38805 * 119.99878 * 359.68887 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47428 * 108.70537 * 358.58102 * 19 18 17 29 29 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47346 * 300.00665 * 1 2 3 31 31 H 1.09000 * 109.46800 * 60.00416 * 1 2 3 32 32 H 1.08996 * 109.47351 * 300.01016 * 5 4 2 33 33 H 1.09007 * 109.47039 * 60.00510 * 5 4 2 34 34 H 1.07993 * 119.99933 * 359.97438 * 7 6 5 35 35 H 1.08010 * 119.99379 * 180.27487 * 8 7 6 36 36 H 1.07997 * 120.00282 * 179.72556 * 9 8 7 37 37 H 1.08004 * 119.99607 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.00273 * 0.02562 * 11 6 5 39 39 H 0.97003 * 120.00743 * 359.97438 * 14 12 2 40 40 H 1.09001 * 109.46863 * 182.42381 * 16 15 14 41 41 H 1.09006 * 109.46671 * 302.41970 * 16 15 14 42 42 H 1.08993 * 109.47559 * 62.42536 * 16 15 14 43 43 H 1.08998 * 110.71770 * 35.79484 * 17 15 14 44 44 H 1.09002 * 110.71853 * 158.88917 * 17 15 14 45 45 H 1.08998 * 109.99457 * 218.65928 * 18 17 15 46 46 H 1.09007 * 109.77698 * 97.49747 * 18 17 15 47 47 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.36579 * 143.19056 * 28 19 18 49 49 H 1.08993 * 110.36917 * 265.41008 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2000 0.1830 2.2941 6 6 2.7012 -0.6280 3.4612 7 6 1.8026 -1.1951 4.3454 8 6 2.2623 -1.9435 5.4129 9 6 3.6208 -2.1153 5.6027 10 6 4.5194 -1.5438 4.7213 11 6 4.0596 -0.8002 3.6506 12 6 2.0324 -0.7105 -1.2304 13 8 2.6530 -1.7468 -1.1213 14 7 1.7920 -0.1944 -2.4519 15 6 2.2808 -0.8848 -3.6480 16 6 3.8090 -0.9590 -3.6488 17 6 1.7556 -0.2015 -4.9382 18 6 0.3450 -0.8056 -5.1022 19 7 0.3230 -2.0718 -4.3555 20 6 -0.7555 -2.9066 -4.2312 21 1 -0.6681 -3.8206 -3.6627 22 6 -1.9608 -2.5778 -4.8360 23 7 -2.0671 -1.4640 -5.5294 24 14 -3.4318 -3.7168 -4.6672 25 1 -4.5891 -3.1426 -5.3993 26 1 -3.0959 -5.0467 -5.2360 27 1 -3.7798 -3.8662 -3.2313 28 6 1.6562 -2.2974 -3.7680 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.9318 0.9514 2.0450 33 1 1.2537 0.6549 2.5588 34 1 0.7415 -1.0566 4.2001 35 1 1.5601 -2.3903 6.1013 36 1 3.9800 -2.6962 6.4392 37 1 5.5808 -1.6777 4.8698 38 1 4.7618 -0.3531 2.9625 39 1 1.2953 0.6343 -2.5392 40 1 4.1490 -1.4376 -4.5672 41 1 4.2216 0.0482 -3.5896 42 1 4.1449 -1.5404 -2.7903 43 1 1.7021 0.8794 -4.8078 44 1 2.3842 -0.4548 -5.7920 45 1 0.1400 -0.9931 -6.1562 46 1 -0.3990 -0.1215 -4.6938 47 1 -2.9093 -1.2345 -5.9523 48 1 1.5642 -2.7563 -2.7835 49 1 2.2585 -2.9258 -4.4239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270632487.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:39 Heat of formation + Delta-G solvation = -26.952011 kcal Electronic energy + Delta-G solvation = -28982.723889 eV Core-core repulsion = 25103.671913 eV Total energy + Delta-G solvation = -3879.051977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.05217 -39.43973 -38.01296 -36.73563 -33.91210 -32.80773 -31.88261 -31.07648 -30.69343 -29.59473 -28.62621 -26.32804 -25.64532 -24.32476 -23.41262 -22.75544 -21.50945 -20.75203 -20.06820 -18.94956 -17.52417 -17.14072 -16.65470 -16.47718 -15.83581 -15.38334 -15.31981 -14.92022 -14.57623 -14.33354 -14.07724 -13.68481 -13.56624 -13.37345 -13.26879 -13.01620 -12.73880 -12.55568 -12.39544 -12.10325 -11.94861 -11.88499 -11.74279 -11.62478 -11.42606 -11.20104 -11.03444 -10.86092 -10.83526 -10.33375 -10.31972 -10.07996 -9.97597 -9.83453 -9.61553 -9.09910 -9.08144 -8.93372 -8.60065 -8.48674 -6.76042 -5.67386 -2.98816 1.07848 1.23683 2.96905 3.10443 3.43743 3.47564 3.49325 3.62188 4.11777 4.54282 4.61584 4.63594 4.81096 4.85480 4.92614 4.96246 5.02625 5.14648 5.16378 5.18611 5.35056 5.41724 5.46533 5.51332 5.64574 5.70324 5.74629 5.75986 5.78092 5.85974 6.03312 6.15878 6.18088 6.25576 6.27886 6.31905 6.38204 6.42130 6.42306 6.57257 6.71788 6.80002 6.87247 7.02807 7.20586 7.57928 7.59226 7.83223 7.95305 8.29926 8.65989 9.27595 9.87547 10.53803 11.44648 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.002896 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.136651 B = 9667.777035 C =10825.617510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.072 3.928 3 H 0.080 0.920 4 O -0.348 6.348 5 C 0.099 3.901 6 C -0.087 4.087 7 C -0.097 4.097 8 C -0.125 4.125 9 C -0.116 4.116 10 C -0.125 4.125 11 C -0.096 4.096 12 C 0.518 3.482 13 O -0.519 6.519 14 N -0.700 5.700 15 C 0.159 3.841 16 C -0.149 4.149 17 C -0.146 4.146 18 C 0.178 3.822 19 N -0.602 5.602 20 C -0.219 4.219 21 H 0.075 0.925 22 C -0.010 4.010 23 N -0.926 5.926 24 Si 0.910 3.090 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.286 1.286 28 C 0.130 3.870 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.396 0.604 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.045 0.955 47 H 0.251 0.749 48 H 0.056 0.944 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.086 8.587 16.932 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.011 3.989 3 H 0.098 0.902 4 O -0.266 6.266 5 C 0.023 3.977 6 C -0.087 4.087 7 C -0.115 4.115 8 C -0.143 4.143 9 C -0.134 4.134 10 C -0.143 4.143 11 C -0.114 4.114 12 C 0.302 3.698 13 O -0.394 6.394 14 N -0.352 5.352 15 C 0.072 3.928 16 C -0.208 4.208 17 C -0.185 4.185 18 C 0.054 3.946 19 N -0.328 5.328 20 C -0.348 4.348 21 H 0.093 0.907 22 C -0.206 4.206 23 N -0.574 5.574 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.212 1.212 27 H -0.213 1.213 28 C 0.003 3.997 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.230 0.770 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.341 7.614 16.936 21.758 hybrid contribution -1.242 0.091 -0.066 1.247 sum 10.099 7.705 16.869 21.117 Atomic orbital electron populations 1.22209 0.93188 1.04461 1.02814 1.21936 0.95376 0.95843 0.85787 0.90180 1.88156 1.86512 1.33533 1.18400 1.21403 0.99552 0.91727 0.85016 1.19575 0.93680 0.99906 0.95515 1.21091 0.99581 0.96496 0.94364 1.21149 0.95772 0.99182 0.98186 1.21190 0.93470 0.99439 0.99337 1.21144 0.99760 0.98159 0.95212 1.21083 0.94936 0.98141 0.97246 1.20106 0.80005 0.85624 0.84021 1.90670 1.39690 1.22648 1.86356 1.45717 1.57374 1.27241 1.04897 1.21464 0.92701 0.94755 0.83873 1.21991 0.94412 1.01452 1.02903 1.23232 1.00658 0.99148 0.95473 1.21140 0.89465 0.87342 0.96700 1.44426 1.06648 1.22546 1.59210 1.19021 0.88039 1.00677 1.27028 0.90686 1.24743 0.97711 0.97795 1.00308 1.69939 1.25004 1.23980 1.38506 0.86221 0.82283 0.79964 0.77474 1.21689 1.21234 1.21269 1.21896 0.87381 0.92760 0.97621 0.90676 0.91784 0.90530 0.92449 0.92286 0.85859 0.85935 0.86096 0.85950 0.85913 0.76979 0.91865 0.93185 0.91080 0.91817 0.90937 0.93935 0.93647 0.93887 0.92549 0.95815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.48 37.16 0.35 -1.85 16 2 C 0.07 0.98 3.13 -27.88 -0.09 0.89 16 3 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 4 O -0.35 -5.21 9.51 -55.09 -0.52 -5.73 16 5 C 0.10 1.09 5.87 36.01 0.21 1.30 16 6 C -0.09 -0.99 5.51 -104.62 -0.58 -1.57 16 7 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 8 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 9 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 10 C -0.12 -1.20 10.05 -39.59 -0.40 -1.59 16 11 C -0.10 -1.03 9.70 -39.59 -0.38 -1.42 16 12 C 0.52 8.94 6.57 -10.99 -0.07 8.87 16 13 O -0.52 -10.96 13.31 -14.30 -0.19 -11.15 16 14 N -0.70 -11.37 5.14 -45.62 -0.23 -11.60 16 15 C 0.16 2.83 0.83 -129.67 -0.11 2.72 16 16 C -0.15 -2.32 8.59 37.16 0.32 -2.00 16 17 C -0.15 -2.58 5.99 -24.89 -0.15 -2.73 16 18 C 0.18 4.19 5.37 -3.06 -0.02 4.17 16 19 N -0.60 -15.52 3.39 -170.06 -0.58 -16.09 16 20 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 23 N -0.93 -26.96 10.31 55.49 0.57 -26.38 16 24 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.13 2.92 6.10 -2.52 -0.02 2.91 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 31 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 32 H 0.06 0.53 8.03 -51.93 -0.42 0.11 16 33 H 0.06 0.54 7.81 -51.92 -0.41 0.13 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 39 H 0.40 5.51 8.27 -40.82 -0.34 5.17 16 40 H 0.06 0.92 8.11 -51.93 -0.42 0.49 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.22 6.53 -51.93 -0.34 0.89 16 43 H 0.06 0.95 8.05 -51.93 -0.42 0.54 16 44 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 45 H 0.04 1.12 7.52 -51.93 -0.39 0.73 16 46 H 0.05 1.16 7.37 -51.93 -0.38 0.77 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.06 1.39 6.32 -51.93 -0.33 1.06 16 49 H 0.02 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -34.32 395.63 -10.37 -44.69 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.00 Total: 4.39 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.35 Total: -1.56 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.24 Total: -54.08 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.71 Total: -16.88 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.32 -10.37 -44.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270632487.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.736 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds