Wall clock time and date at job start Tue Mar 31 2020 16:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46867 * 2 1 4 4 O 1.42901 * 109.46476 * 119.99475 * 2 1 3 5 5 C 1.42896 * 114.00195 * 269.99618 * 4 2 1 6 6 C 1.50702 * 109.47235 * 180.02562 * 5 4 2 7 7 C 1.38238 * 119.99843 * 269.72957 * 6 5 4 8 8 C 1.38235 * 119.99230 * 179.74619 * 7 6 5 9 9 C 1.38235 * 120.00513 * 0.54920 * 8 7 6 10 10 C 1.38231 * 119.99600 * 359.70375 * 9 8 7 11 11 C 1.38229 * 119.99861 * 90.00332 * 6 5 4 12 12 C 1.50699 * 109.47078 * 239.99473 * 2 1 3 13 13 O 1.21279 * 119.99771 * 245.00176 * 12 2 1 14 14 N 1.34768 * 119.99897 * 65.00350 * 12 2 1 15 15 C 1.46501 * 120.00137 * 179.97438 * 14 12 2 16 16 C 1.52997 * 110.88668 * 297.57715 * 15 14 12 17 17 C 1.55157 * 111.00716 * 173.64774 * 15 14 12 18 18 C 1.54334 * 103.02095 * 277.23316 * 17 15 14 19 19 N 1.47014 * 107.26782 * 338.14225 * 18 17 15 20 20 C 1.36945 * 125.64902 * 178.84833 * 19 18 17 21 21 H 1.07997 * 119.99756 * 179.68982 * 20 19 18 22 22 C 1.38805 * 119.99878 * 359.68887 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47428 * 108.70537 * 358.58102 * 19 18 17 29 29 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47346 * 300.00665 * 1 2 3 31 31 H 1.09000 * 109.46800 * 60.00416 * 1 2 3 32 32 H 1.08996 * 109.47351 * 300.01016 * 5 4 2 33 33 H 1.09007 * 109.47039 * 60.00510 * 5 4 2 34 34 H 1.07993 * 119.99933 * 359.97438 * 7 6 5 35 35 H 1.08010 * 119.99379 * 180.27487 * 8 7 6 36 36 H 1.07997 * 120.00282 * 179.72556 * 9 8 7 37 37 H 1.08004 * 119.99607 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.00273 * 0.02562 * 11 6 5 39 39 H 0.97003 * 120.00743 * 359.97438 * 14 12 2 40 40 H 1.09001 * 109.46863 * 182.42381 * 16 15 14 41 41 H 1.09006 * 109.46671 * 302.41970 * 16 15 14 42 42 H 1.08993 * 109.47559 * 62.42536 * 16 15 14 43 43 H 1.08998 * 110.71770 * 35.79484 * 17 15 14 44 44 H 1.09002 * 110.71853 * 158.88917 * 17 15 14 45 45 H 1.08998 * 109.99457 * 218.65928 * 18 17 15 46 46 H 1.09007 * 109.77698 * 97.49747 * 18 17 15 47 47 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.36579 * 143.19056 * 28 19 18 49 49 H 1.08993 * 110.36917 * 265.41008 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2000 0.1830 2.2941 6 6 2.7012 -0.6280 3.4612 7 6 1.8026 -1.1951 4.3454 8 6 2.2623 -1.9435 5.4129 9 6 3.6208 -2.1153 5.6027 10 6 4.5194 -1.5438 4.7213 11 6 4.0596 -0.8002 3.6506 12 6 2.0324 -0.7105 -1.2304 13 8 2.6530 -1.7468 -1.1213 14 7 1.7920 -0.1944 -2.4519 15 6 2.2808 -0.8848 -3.6480 16 6 3.8090 -0.9590 -3.6488 17 6 1.7556 -0.2015 -4.9382 18 6 0.3450 -0.8056 -5.1022 19 7 0.3230 -2.0718 -4.3555 20 6 -0.7555 -2.9066 -4.2312 21 1 -0.6681 -3.8206 -3.6627 22 6 -1.9608 -2.5778 -4.8360 23 7 -2.0671 -1.4640 -5.5294 24 14 -3.4318 -3.7168 -4.6672 25 1 -4.5891 -3.1426 -5.3993 26 1 -3.0959 -5.0467 -5.2360 27 1 -3.7798 -3.8662 -3.2313 28 6 1.6562 -2.2974 -3.7680 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.9318 0.9514 2.0450 33 1 1.2537 0.6549 2.5588 34 1 0.7415 -1.0566 4.2001 35 1 1.5601 -2.3903 6.1013 36 1 3.9800 -2.6962 6.4392 37 1 5.5808 -1.6777 4.8698 38 1 4.7618 -0.3531 2.9625 39 1 1.2953 0.6343 -2.5392 40 1 4.1490 -1.4376 -4.5672 41 1 4.2216 0.0482 -3.5896 42 1 4.1449 -1.5404 -2.7903 43 1 1.7021 0.8794 -4.8078 44 1 2.3842 -0.4548 -5.7920 45 1 0.1400 -0.9931 -6.1562 46 1 -0.3990 -0.1215 -4.6938 47 1 -2.9093 -1.2345 -5.9523 48 1 1.5642 -2.7563 -2.7835 49 1 2.2585 -2.9258 -4.4239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270632487.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:38 Heat of formation + Delta-G solvation = -47.947269 kcal Electronic energy + Delta-G solvation = -28983.634312 eV Core-core repulsion = 25103.671913 eV Total energy + Delta-G solvation = -3879.962400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.38216 -40.28650 -39.27916 -38.10523 -35.66372 -34.07449 -33.20378 -32.09745 -31.80046 -31.02113 -30.26485 -27.52114 -27.15329 -25.71462 -24.96160 -23.48848 -22.35239 -22.26639 -21.65607 -20.41707 -19.05810 -18.36756 -17.93729 -17.50164 -16.97240 -16.72180 -16.53320 -16.26845 -16.05997 -15.63199 -15.46135 -15.12292 -14.91442 -14.32574 -14.28580 -14.13256 -13.92873 -13.83021 -13.60698 -13.48104 -13.38963 -13.26764 -13.03740 -12.99823 -12.81799 -12.75331 -12.44581 -12.11660 -12.05270 -11.95476 -11.92512 -11.82014 -11.69045 -11.51371 -10.88973 -10.70329 -10.33959 -9.96795 -9.83102 -9.76586 -8.85746 -7.85687 -5.18969 0.31614 0.49103 1.42923 1.45268 1.51860 1.66539 1.97797 2.48021 2.72708 3.19550 3.32092 3.54032 3.68985 3.77454 3.88004 3.89262 3.98808 4.03971 4.10862 4.14437 4.20403 4.27882 4.35259 4.38616 4.62680 4.65639 4.66563 4.69372 4.74246 4.77542 4.83045 4.87623 4.94370 5.03953 5.06701 5.09478 5.14262 5.19397 5.35985 5.42270 5.53523 5.59500 5.65859 5.66057 5.70688 5.79175 6.06963 6.11902 6.20666 6.68387 7.12515 7.36015 7.77835 8.42190 9.23714 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.002896 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.136651 B = 9667.777035 C =10825.617510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 H 0.124 0.876 4 O -0.381 6.381 5 C 0.096 3.904 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.134 4.134 9 C -0.121 4.121 10 C -0.133 4.133 11 C -0.114 4.114 12 C 0.510 3.490 13 O -0.564 6.564 14 N -0.694 5.694 15 C 0.168 3.832 16 C -0.139 4.139 17 C -0.127 4.127 18 C 0.185 3.815 19 N -0.619 5.619 20 C -0.242 4.242 21 H 0.064 0.936 22 C -0.056 4.056 23 N -0.943 5.943 24 Si 0.971 3.029 25 H -0.287 1.287 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.127 3.873 29 H 0.036 0.964 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.410 0.590 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.007 0.993 46 H 0.021 0.979 47 H 0.248 0.752 48 H 0.027 0.973 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.864 10.266 17.940 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 H 0.141 0.859 4 O -0.300 6.300 5 C 0.021 3.979 6 C -0.109 4.109 7 C -0.132 4.132 8 C -0.152 4.152 9 C -0.139 4.139 10 C -0.151 4.151 11 C -0.132 4.132 12 C 0.297 3.703 13 O -0.443 6.443 14 N -0.347 5.347 15 C 0.081 3.919 16 C -0.197 4.197 17 C -0.166 4.166 18 C 0.061 3.939 19 N -0.345 5.345 20 C -0.371 4.371 21 H 0.082 0.918 22 C -0.249 4.249 23 N -0.592 5.592 24 Si 0.800 3.200 25 H -0.213 1.213 26 H -0.208 1.208 27 H -0.208 1.208 28 C 0.001 3.999 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.246 0.754 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.026 0.974 46 H 0.039 0.961 47 H 0.058 0.942 48 H 0.045 0.955 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 12.128 9.325 17.951 23.586 hybrid contribution -1.473 -0.505 -0.329 1.592 sum 10.655 8.820 17.621 22.402 Atomic orbital electron populations 1.22173 0.92967 1.02430 1.04496 1.21939 0.95251 0.97110 0.83907 0.85861 1.88123 1.86717 1.35595 1.19545 1.21617 1.01073 0.91564 0.83683 1.19807 0.94210 1.00812 0.96081 1.21328 1.00025 0.96992 0.94896 1.21478 0.96601 0.98859 0.98213 1.21551 0.93335 0.99180 0.99853 1.21472 1.01062 0.97673 0.94867 1.21317 0.95045 0.98797 0.98004 1.20881 0.79067 0.85176 0.85222 1.90648 1.41812 1.24713 1.87086 1.45679 1.57181 1.27460 1.04363 1.21326 0.94102 0.91720 0.84719 1.21908 0.92090 1.03117 1.02633 1.23107 0.96673 1.00911 0.95863 1.20955 0.92761 0.86221 0.94001 1.44657 1.07135 1.22987 1.59725 1.19237 0.89558 1.01127 1.27229 0.91849 1.25466 0.99968 0.99335 1.00157 1.70127 1.25240 1.25044 1.38805 0.85268 0.79062 0.78226 0.77469 1.21282 1.20826 1.20786 1.21984 0.86438 0.95958 0.95568 0.94478 0.88689 0.90235 0.90623 0.90430 0.85227 0.84014 0.83689 0.83968 0.85367 0.75372 0.90724 0.90114 0.93056 0.88021 0.89136 0.97436 0.96068 0.94249 0.95505 0.96184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.48 71.98 0.68 -3.41 16 2 C 0.08 2.03 3.13 29.85 0.09 2.12 16 3 H 0.12 2.09 7.79 -2.39 -0.02 2.07 16 4 O -0.38 -11.15 9.51 -129.99 -1.24 -12.39 16 5 C 0.10 1.96 5.87 71.24 0.42 2.38 16 6 C -0.11 -2.43 5.51 -19.87 -0.11 -2.54 16 7 C -0.11 -2.38 9.70 22.27 0.22 -2.16 16 8 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 9 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 10 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 11 C -0.11 -2.38 9.70 22.27 0.22 -2.16 16 12 C 0.51 17.41 6.57 87.66 0.58 17.98 16 13 O -0.56 -24.41 13.31 15.96 0.21 -24.20 16 14 N -0.69 -21.64 5.14 -416.65 -2.14 -23.78 16 15 C 0.17 5.80 0.83 5.00 0.00 5.81 16 16 C -0.14 -4.02 8.59 71.98 0.62 -3.40 16 17 C -0.13 -4.21 5.99 31.79 0.19 -4.02 16 18 C 0.19 8.78 5.37 86.73 0.47 9.25 16 19 N -0.62 -32.77 3.39 -691.96 -2.35 -35.12 16 20 C -0.24 -14.27 10.28 84.03 0.86 -13.41 16 21 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 23 N -0.94 -55.92 10.31 21.65 0.22 -55.70 16 24 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 28 C 0.13 5.83 6.10 86.86 0.53 6.36 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.77 7.87 -2.39 -0.02 1.75 16 31 H 0.08 1.92 7.92 -2.39 -0.02 1.90 16 32 H 0.08 1.22 8.03 -2.39 -0.02 1.20 16 33 H 0.08 1.25 7.81 -2.38 -0.02 1.23 16 34 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.41 10.46 8.27 -92.71 -0.77 9.69 16 40 H 0.07 1.98 8.11 -2.39 -0.02 1.96 16 41 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.05 1.72 6.53 -2.39 -0.02 1.71 16 43 H 0.10 2.64 8.05 -2.39 -0.02 2.62 16 44 H 0.09 2.72 8.01 -2.39 -0.02 2.71 16 45 H 0.01 0.40 7.52 -2.39 -0.02 0.38 16 46 H 0.02 1.09 7.37 -2.38 -0.02 1.07 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.03 1.38 6.32 -2.39 -0.02 1.37 16 49 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 Total: -1.00 -78.46 395.63 2.81 -75.65 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.17 Total: 22.66 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.90 Total: 3.86 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -4.27 Total: -114.59 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.02 Total: -36.59 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -78.46 2.81 -75.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270632487.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.701 kcal (2) G-P(sol) polarization free energy of solvation -78.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds