Wall clock time and date at job start Tue Mar 31 2020 16:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46801 * 2 1 4 4 N 1.46498 * 109.46984 * 239.99730 * 2 1 3 5 5 C 1.34778 * 119.99815 * 85.00359 * 4 2 1 6 6 O 1.21281 * 120.00064 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00008 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46696 * 299.99872 * 7 5 4 9 9 C 1.50695 * 109.46665 * 59.99959 * 7 5 4 10 10 H 1.08000 * 119.99607 * 235.34309 * 9 7 5 11 11 C 1.37875 * 120.00160 * 55.35465 * 9 7 5 12 12 N 1.31517 * 120.00129 * 1.97205 * 11 9 7 13 13 Si 1.86802 * 120.00124 * 181.98047 * 11 9 7 14 14 H 1.48497 * 109.47285 * 89.99240 * 13 11 9 15 15 H 1.48497 * 109.47328 * 209.99826 * 13 11 9 16 16 H 1.48504 * 109.46699 * 329.99681 * 13 11 9 17 17 C 1.50698 * 109.47103 * 180.02562 * 7 5 4 18 18 C 1.38237 * 119.99885 * 226.94277 * 17 7 5 19 19 C 1.38230 * 119.99741 * 179.79216 * 18 17 7 20 20 C 1.38241 * 120.00279 * 0.43020 * 19 18 17 21 21 C 1.38236 * 119.99781 * 359.81723 * 20 19 18 22 22 C 1.38232 * 120.00088 * 359.97438 * 21 20 19 23 23 C 1.50698 * 109.46996 * 119.99969 * 2 1 3 24 24 O 1.21279 * 120.00060 * 119.99501 * 23 2 1 25 25 N 1.34777 * 119.99807 * 300.00096 * 23 2 1 26 26 C 1.46502 * 119.99702 * 179.97438 * 25 23 2 27 27 C 1.53000 * 109.47183 * 60.00090 * 26 25 23 28 28 C 1.53004 * 109.46999 * 179.97438 * 26 25 23 29 29 C 1.53005 * 109.47215 * 299.99938 * 26 25 23 30 30 H 1.09000 * 109.46801 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46775 * 60.00248 * 1 2 3 32 32 H 1.08995 * 109.46970 * 300.00207 * 1 2 3 33 33 H 0.96999 * 120.00375 * 264.99975 * 4 2 1 34 34 H 0.96999 * 120.00077 * 180.02562 * 12 11 9 35 35 H 1.07993 * 119.99619 * 359.97438 * 18 17 7 36 36 H 1.08005 * 120.00174 * 180.27094 * 19 18 17 37 37 H 1.08000 * 119.99707 * 179.83866 * 20 19 18 38 38 H 1.08002 * 119.99867 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00019 * 179.97438 * 22 21 20 40 40 H 0.96993 * 120.00185 * 0.02562 * 25 23 2 41 41 H 1.09000 * 109.47120 * 60.00278 * 27 26 25 42 42 H 1.09004 * 109.46927 * 179.97438 * 27 26 25 43 43 H 1.08995 * 109.46782 * 299.99694 * 27 26 25 44 44 H 1.09002 * 109.47172 * 60.00057 * 28 26 25 45 45 H 1.09004 * 109.47392 * 179.97438 * 28 26 25 46 46 H 1.09000 * 109.47509 * 299.99847 * 28 26 25 47 47 H 1.08990 * 109.46915 * 59.99882 * 29 26 25 48 48 H 1.09004 * 109.47078 * 180.02562 * 29 26 25 49 49 H 1.09002 * 109.47124 * 300.00046 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8592 1.1586 -2.4115 7 6 2.6500 -0.7286 -3.5875 8 1 3.6493 -1.1204 -3.3978 9 6 1.7206 -1.8654 -3.9262 10 1 2.1079 -2.8689 -4.0232 11 6 0.3759 -1.6244 -4.1124 12 7 -0.0894 -0.3969 -4.0328 13 14 -0.7852 -3.0414 -4.4777 14 1 -1.3137 -3.5896 -3.2027 15 1 -1.9128 -2.5549 -5.3125 16 1 -0.0520 -4.1064 -5.2081 17 6 2.7012 0.2398 -4.7409 18 6 2.1827 -0.1215 -5.9704 19 6 2.2258 0.7684 -7.0272 20 6 2.7955 2.0165 -6.8571 21 6 3.3186 2.3759 -5.6291 22 6 3.2716 1.4876 -4.5711 23 6 2.0324 -0.7104 1.2305 24 8 2.7295 -1.6965 1.1192 25 7 1.7067 -0.2499 2.4545 26 6 2.1946 -0.9409 3.6507 27 6 3.7246 -0.9415 3.6510 28 6 1.6852 -0.2192 4.9000 29 6 1.6840 -2.3832 3.6505 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 0.5138 0.8899 33 1 2.2491 -1.6318 -1.1526 34 1 -1.0355 -0.2274 -4.1634 35 1 1.7413 -1.0980 -6.1042 36 1 1.8167 0.4878 -7.9866 37 1 2.8315 2.7107 -7.6836 38 1 3.7641 3.3508 -5.4963 39 1 3.6807 1.7682 -3.6118 40 1 1.1488 0.5385 2.5435 41 1 4.0883 0.0861 3.6513 42 1 4.0875 -1.4552 4.5413 43 1 4.0878 -1.4554 2.7611 44 1 0.5951 -0.2183 4.9000 45 1 2.0477 -0.7335 5.7900 46 1 2.0493 0.8082 4.9000 47 1 2.0472 -2.8970 2.7606 48 1 2.0466 -2.8972 4.5407 49 1 0.5940 -2.3828 3.6503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361686708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:15 Heat of formation + Delta-G solvation = -55.696727 kcal Electronic energy + Delta-G solvation = -29715.887243 eV Core-core repulsion = 25835.588801 eV Total energy + Delta-G solvation = -3880.298441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.27017 -38.86662 -37.50630 -36.45670 -34.16642 -33.55096 -32.10447 -30.80106 -29.64662 -29.52725 -27.56049 -27.32780 -27.06072 -24.42154 -23.68746 -21.33855 -21.12092 -20.11247 -19.51693 -19.14999 -17.49424 -16.55060 -16.00609 -15.65236 -15.36542 -14.99950 -14.91503 -14.69006 -14.21714 -13.94931 -13.70440 -13.62165 -13.54054 -13.18656 -12.62086 -12.57455 -12.46431 -12.26594 -12.19525 -12.15261 -12.00244 -11.94716 -11.68916 -11.62781 -11.33851 -11.24484 -11.14715 -10.98813 -10.94277 -10.72978 -10.39967 -10.00762 -9.63253 -9.37350 -9.33287 -9.07657 -8.68162 -8.29901 -8.02645 -7.65311 -7.35970 -6.10108 -4.25176 2.58223 2.65159 2.77826 3.10344 3.22414 3.31527 3.33170 4.12868 4.29981 4.43318 4.57558 4.76505 4.89579 4.96012 5.06659 5.17254 5.33623 5.45684 5.52567 5.57934 5.62863 5.64326 5.67809 5.84081 5.85853 5.88143 5.89580 6.01418 6.09067 6.19782 6.24253 6.29516 6.43162 6.56527 6.62314 6.69855 6.72113 6.84900 6.95906 7.17232 7.25435 7.40968 7.58376 7.64309 7.69018 7.73455 7.84200 8.20487 8.31995 8.33077 8.66151 8.85458 9.40778 9.70084 10.90175 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014576 B = 0.003627 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.549723 B = 7718.701995 C = 8876.843290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.102 0.898 4 N -0.718 5.718 5 C 0.556 3.444 6 O -0.550 6.550 7 C 0.057 3.943 8 H 0.058 0.942 9 C -0.537 4.537 10 H 0.067 0.933 11 C 0.076 3.924 12 N -0.842 5.842 13 Si 0.884 3.116 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.271 1.271 17 C -0.012 4.012 18 C -0.065 4.065 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.100 4.100 23 C 0.516 3.484 24 O -0.529 6.529 25 N -0.725 5.725 26 C 0.168 3.832 27 C -0.164 4.164 28 C -0.154 4.154 29 C -0.164 4.164 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.406 0.594 34 H 0.263 0.737 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.399 0.601 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 1.148 13.012 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.119 0.881 4 N -0.373 5.373 5 C 0.345 3.655 6 O -0.426 6.426 7 C 0.036 3.964 8 H 0.076 0.924 9 C -0.575 4.575 10 H 0.085 0.915 11 C -0.132 4.132 12 N -0.475 5.475 13 Si 0.712 3.288 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.196 1.196 17 C -0.013 4.013 18 C -0.083 4.083 19 C -0.166 4.166 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.118 4.118 23 C 0.302 3.698 24 O -0.405 6.405 25 N -0.379 5.379 26 C 0.083 3.917 27 C -0.222 4.222 28 C -0.212 4.212 29 C -0.222 4.222 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.242 0.758 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.234 0.766 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.078 0.922 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.748 1.413 12.866 13.232 hybrid contribution -1.338 -0.619 -0.004 1.475 sum 1.410 0.794 12.862 12.963 Atomic orbital electron populations 1.22094 0.93778 1.02564 1.02746 1.20480 0.95213 0.97593 0.84317 0.88069 1.45638 1.69504 1.14533 1.07608 1.21032 0.75066 0.86148 0.83212 1.90526 1.50602 1.17157 1.84332 1.17865 0.96804 0.93649 0.88095 0.92426 1.20702 0.91907 0.93063 1.51831 0.91516 1.25015 0.98266 0.95329 0.94554 1.70076 1.14300 1.18076 1.45021 0.86700 0.80878 0.82790 0.78450 1.20620 1.21194 1.19613 1.19807 0.93173 0.93551 0.94802 1.21141 0.95678 0.99670 0.91775 1.20984 1.02083 0.94866 0.98642 1.20766 1.01982 0.96745 0.96872 1.20811 1.02816 0.98815 0.93835 1.20964 0.99671 0.94072 0.97135 1.20973 0.79492 0.84526 0.84760 1.90611 1.37349 1.26011 1.86537 1.46150 1.54328 1.32233 1.05198 1.20312 0.94420 0.92707 0.84283 1.22230 0.94314 1.02156 1.03511 1.22086 1.01585 1.00740 0.96802 1.22229 1.00909 0.95571 1.03506 0.92447 0.89862 0.92925 0.75845 0.92642 0.85444 0.88092 0.88272 0.88166 0.87540 0.76623 0.92805 0.92134 0.90105 0.91970 0.91004 0.91966 0.90084 0.92153 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.38 37.16 0.35 -2.14 16 2 C 0.13 2.26 2.98 -69.08 -0.21 2.06 16 3 H 0.10 1.74 7.58 -51.93 -0.39 1.34 16 4 N -0.72 -14.62 4.85 -54.93 -0.27 -14.89 16 5 C 0.56 13.00 5.42 -10.98 -0.06 12.94 16 6 O -0.55 -14.07 13.62 5.56 0.08 -13.99 16 7 C 0.06 1.36 2.77 -94.08 -0.26 1.09 16 8 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 9 C -0.54 -13.21 7.11 -34.44 -0.24 -13.46 16 10 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.08 1.91 4.01 -17.82 -0.07 1.83 16 12 N -0.84 -22.41 10.90 55.43 0.60 -21.81 16 13 Si 0.88 19.93 29.54 -169.99 -5.02 14.91 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C -0.01 -0.30 4.51 -104.62 -0.47 -0.77 16 18 C -0.06 -1.52 8.21 -39.58 -0.32 -1.84 16 19 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 20 C -0.15 -2.90 10.05 -39.58 -0.40 -3.29 16 21 C -0.14 -2.98 10.05 -39.58 -0.40 -3.38 16 22 C -0.10 -2.28 8.21 -39.58 -0.33 -2.60 16 23 C 0.52 7.75 6.64 -10.99 -0.07 7.68 16 24 O -0.53 -9.28 12.05 5.56 0.07 -9.22 16 25 N -0.73 -8.16 5.00 -47.60 -0.24 -8.40 16 26 C 0.17 1.70 1.06 -131.81 -0.14 1.56 16 27 C -0.16 -1.76 8.40 37.16 0.31 -1.45 16 28 C -0.15 -1.11 8.59 37.16 0.32 -0.79 16 29 C -0.16 -1.79 8.40 37.16 0.31 -1.47 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.05 0.65 7.56 -51.93 -0.39 0.25 16 33 H 0.41 8.31 7.68 -40.82 -0.31 8.00 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.13 3.09 6.04 -52.49 -0.32 2.77 16 36 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.39 7.01 -52.49 -0.37 2.02 16 40 H 0.40 3.60 7.89 -40.82 -0.32 3.27 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.10 6.17 -51.93 -0.32 0.78 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -29.76 390.92 -8.75 -38.51 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -7.79 Total: 16.51 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.08 Total: -7.52 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.10 Total: -45.09 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.14 Total: -23.21 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.76 -8.75 -38.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361686708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.185 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds