Wall clock time and date at job start Tue Mar 31 2020 16:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46801 * 2 1 4 4 N 1.46498 * 109.46984 * 239.99730 * 2 1 3 5 5 C 1.34778 * 119.99815 * 85.00359 * 4 2 1 6 6 O 1.21281 * 120.00064 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00008 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46696 * 299.99872 * 7 5 4 9 9 C 1.50695 * 109.46665 * 59.99959 * 7 5 4 10 10 H 1.08000 * 119.99607 * 235.34309 * 9 7 5 11 11 C 1.37875 * 120.00160 * 55.35465 * 9 7 5 12 12 N 1.31517 * 120.00129 * 1.97205 * 11 9 7 13 13 Si 1.86802 * 120.00124 * 181.98047 * 11 9 7 14 14 H 1.48497 * 109.47285 * 89.99240 * 13 11 9 15 15 H 1.48497 * 109.47328 * 209.99826 * 13 11 9 16 16 H 1.48504 * 109.46699 * 329.99681 * 13 11 9 17 17 C 1.50698 * 109.47103 * 180.02562 * 7 5 4 18 18 C 1.38237 * 119.99885 * 226.94277 * 17 7 5 19 19 C 1.38230 * 119.99741 * 179.79216 * 18 17 7 20 20 C 1.38241 * 120.00279 * 0.43020 * 19 18 17 21 21 C 1.38236 * 119.99781 * 359.81723 * 20 19 18 22 22 C 1.38232 * 120.00088 * 359.97438 * 21 20 19 23 23 C 1.50698 * 109.46996 * 119.99969 * 2 1 3 24 24 O 1.21279 * 120.00060 * 119.99501 * 23 2 1 25 25 N 1.34777 * 119.99807 * 300.00096 * 23 2 1 26 26 C 1.46502 * 119.99702 * 179.97438 * 25 23 2 27 27 C 1.53000 * 109.47183 * 60.00090 * 26 25 23 28 28 C 1.53004 * 109.46999 * 179.97438 * 26 25 23 29 29 C 1.53005 * 109.47215 * 299.99938 * 26 25 23 30 30 H 1.09000 * 109.46801 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46775 * 60.00248 * 1 2 3 32 32 H 1.08995 * 109.46970 * 300.00207 * 1 2 3 33 33 H 0.96999 * 120.00375 * 264.99975 * 4 2 1 34 34 H 0.96999 * 120.00077 * 180.02562 * 12 11 9 35 35 H 1.07993 * 119.99619 * 359.97438 * 18 17 7 36 36 H 1.08005 * 120.00174 * 180.27094 * 19 18 17 37 37 H 1.08000 * 119.99707 * 179.83866 * 20 19 18 38 38 H 1.08002 * 119.99867 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00019 * 179.97438 * 22 21 20 40 40 H 0.96993 * 120.00185 * 0.02562 * 25 23 2 41 41 H 1.09000 * 109.47120 * 60.00278 * 27 26 25 42 42 H 1.09004 * 109.46927 * 179.97438 * 27 26 25 43 43 H 1.08995 * 109.46782 * 299.99694 * 27 26 25 44 44 H 1.09002 * 109.47172 * 60.00057 * 28 26 25 45 45 H 1.09004 * 109.47392 * 179.97438 * 28 26 25 46 46 H 1.09000 * 109.47509 * 299.99847 * 28 26 25 47 47 H 1.08990 * 109.46915 * 59.99882 * 29 26 25 48 48 H 1.09004 * 109.47078 * 180.02562 * 29 26 25 49 49 H 1.09002 * 109.47124 * 300.00046 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8592 1.1586 -2.4115 7 6 2.6500 -0.7286 -3.5875 8 1 3.6493 -1.1204 -3.3978 9 6 1.7206 -1.8654 -3.9262 10 1 2.1079 -2.8689 -4.0232 11 6 0.3759 -1.6244 -4.1124 12 7 -0.0894 -0.3969 -4.0328 13 14 -0.7852 -3.0414 -4.4777 14 1 -1.3137 -3.5896 -3.2027 15 1 -1.9128 -2.5549 -5.3125 16 1 -0.0520 -4.1064 -5.2081 17 6 2.7012 0.2398 -4.7409 18 6 2.1827 -0.1215 -5.9704 19 6 2.2258 0.7684 -7.0272 20 6 2.7955 2.0165 -6.8571 21 6 3.3186 2.3759 -5.6291 22 6 3.2716 1.4876 -4.5711 23 6 2.0324 -0.7104 1.2305 24 8 2.7295 -1.6965 1.1192 25 7 1.7067 -0.2499 2.4545 26 6 2.1946 -0.9409 3.6507 27 6 3.7246 -0.9415 3.6510 28 6 1.6852 -0.2192 4.9000 29 6 1.6840 -2.3832 3.6505 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 0.5138 0.8899 33 1 2.2491 -1.6318 -1.1526 34 1 -1.0355 -0.2274 -4.1634 35 1 1.7413 -1.0980 -6.1042 36 1 1.8167 0.4878 -7.9866 37 1 2.8315 2.7107 -7.6836 38 1 3.7641 3.3508 -5.4963 39 1 3.6807 1.7682 -3.6118 40 1 1.1488 0.5385 2.5435 41 1 4.0883 0.0861 3.6513 42 1 4.0875 -1.4552 4.5413 43 1 4.0878 -1.4554 2.7611 44 1 0.5951 -0.2183 4.9000 45 1 2.0477 -0.7335 5.7900 46 1 2.0493 0.8082 4.9000 47 1 2.0472 -2.8970 2.7606 48 1 2.0466 -2.8972 4.5407 49 1 0.5940 -2.3828 3.6503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361686708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:13 Heat of formation + Delta-G solvation = -73.748391 kcal Electronic energy + Delta-G solvation = -29716.670021 eV Core-core repulsion = 25835.588801 eV Total energy + Delta-G solvation = -3881.081220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.50426 -40.53733 -39.11346 -37.57361 -35.69835 -35.42983 -33.29411 -32.61951 -31.33407 -30.96499 -28.82601 -28.22609 -28.18517 -26.02291 -25.29791 -22.96859 -22.59360 -21.53972 -20.89628 -20.52936 -19.03783 -18.16925 -17.32140 -17.18010 -16.93629 -16.61007 -16.40277 -16.03858 -15.60440 -15.37575 -15.18763 -15.09461 -14.61774 -14.51193 -14.19411 -14.17483 -13.91472 -13.69638 -13.51989 -13.31471 -13.13501 -13.02223 -12.98365 -12.95581 -12.75697 -12.63127 -12.53132 -12.43443 -12.25114 -12.09025 -11.92305 -11.75438 -11.40944 -11.15935 -10.62676 -10.61027 -10.16690 -10.09945 -9.70204 -9.35744 -9.08349 -8.04991 -6.23719 0.89722 0.95270 1.40041 1.44974 1.51654 1.56068 2.00318 2.31877 2.46360 2.83228 3.21696 3.37038 3.61209 3.94808 4.00725 4.11180 4.15653 4.20453 4.35809 4.37829 4.50838 4.59062 4.69301 4.71560 4.74029 4.75979 4.78347 4.87936 4.88499 4.96827 5.01723 5.02090 5.09240 5.18004 5.23397 5.26712 5.37076 5.41959 5.47626 5.56307 5.62903 5.72674 5.84670 5.91599 5.97585 6.00396 6.45094 6.55039 6.56185 6.76005 7.04124 7.21918 7.43902 7.89681 8.93688 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014576 B = 0.003627 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.549723 B = 7718.701995 C = 8876.843290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.130 3.870 3 H 0.100 0.900 4 N -0.716 5.716 5 C 0.557 3.443 6 O -0.576 6.576 7 C 0.046 3.954 8 H 0.060 0.940 9 C -0.537 4.537 10 H 0.064 0.936 11 C 0.047 3.953 12 N -0.865 5.865 13 Si 0.935 3.065 14 H -0.281 1.281 15 H -0.290 1.290 16 H -0.266 1.266 17 C -0.034 4.034 18 C -0.087 4.087 19 C -0.151 4.151 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.118 4.118 23 C 0.521 3.479 24 O -0.557 6.557 25 N -0.708 5.708 26 C 0.163 3.837 27 C -0.162 4.162 28 C -0.147 4.147 29 C -0.162 4.162 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.403 0.597 34 H 0.256 0.744 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.413 0.587 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.046 0.954 48 H 0.079 0.921 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 2.012 14.235 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.021 3.979 3 H 0.117 0.883 4 N -0.369 5.369 5 C 0.346 3.654 6 O -0.455 6.455 7 C 0.025 3.975 8 H 0.078 0.922 9 C -0.575 4.575 10 H 0.082 0.918 11 C -0.158 4.158 12 N -0.499 5.499 13 Si 0.762 3.238 14 H -0.207 1.207 15 H -0.216 1.216 16 H -0.190 1.190 17 C -0.035 4.035 18 C -0.105 4.105 19 C -0.169 4.169 20 C -0.159 4.159 21 C -0.163 4.163 22 C -0.136 4.136 23 C 0.307 3.693 24 O -0.435 6.435 25 N -0.361 5.361 26 C 0.078 3.922 27 C -0.220 4.220 28 C -0.204 4.204 29 C -0.220 4.220 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.239 0.761 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.117 0.883 40 H 0.250 0.750 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.065 0.935 48 H 0.098 0.902 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.373 2.272 14.136 14.512 hybrid contribution -1.154 -0.879 -0.354 1.493 sum 1.218 1.394 13.781 13.905 Atomic orbital electron populations 1.21963 0.93031 1.01977 1.02993 1.20646 0.95726 0.97386 0.84130 0.88256 1.45574 1.68788 1.14359 1.08164 1.20896 0.74840 0.85806 0.83830 1.90489 1.51977 1.18125 1.84917 1.17972 0.96789 0.93871 0.88865 0.92210 1.20823 0.92258 0.93160 1.51270 0.91751 1.25453 0.99201 0.96738 0.94398 1.70216 1.13814 1.19542 1.46350 0.85905 0.79167 0.80740 0.78017 1.20718 1.21586 1.19005 1.19886 0.94362 0.94272 0.94963 1.21115 0.96926 0.99794 0.92677 1.21305 1.01636 0.94982 0.98973 1.21182 1.00296 0.96735 0.97677 1.21188 1.02116 0.99564 0.93446 1.21027 1.00445 0.94333 0.97779 1.20549 0.79419 0.84051 0.85273 1.90620 1.38743 1.27220 1.86947 1.46050 1.53437 1.32267 1.04348 1.20537 0.94121 0.92712 0.84800 1.22200 0.94818 1.02199 1.02807 1.22047 1.02192 1.00964 0.95243 1.22199 1.01102 0.95930 1.02796 0.93347 0.93675 0.88481 0.76116 0.93429 0.87122 0.85598 0.84375 0.85166 0.88266 0.75011 0.92352 0.90148 0.93497 0.90988 0.89448 0.90987 0.93480 0.90185 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.38 71.98 0.68 -3.90 16 2 C 0.13 4.46 2.98 44.25 0.13 4.60 16 3 H 0.10 3.46 7.58 -2.39 -0.02 3.44 16 4 N -0.72 -30.24 4.85 -446.08 -2.16 -32.41 16 5 C 0.56 27.03 5.42 87.66 0.48 27.50 16 6 O -0.58 -30.49 13.62 -3.03 -0.04 -30.53 16 7 C 0.05 2.28 2.77 -13.03 -0.04 2.25 16 8 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 9 C -0.54 -27.22 7.11 25.60 0.18 -27.04 16 10 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 11 C 0.05 2.41 4.01 84.65 0.34 2.75 16 12 N -0.87 -47.27 10.90 21.45 0.23 -47.03 16 13 Si 0.94 41.56 29.54 68.60 2.03 43.59 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 15 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 C -0.03 -1.66 4.51 -19.86 -0.09 -1.75 16 18 C -0.09 -4.14 8.21 22.27 0.18 -3.96 16 19 C -0.15 -6.17 10.05 22.27 0.22 -5.95 16 20 C -0.14 -5.27 10.05 22.27 0.22 -5.05 16 21 C -0.15 -5.76 10.05 22.27 0.22 -5.53 16 22 C -0.12 -5.40 8.21 22.27 0.18 -5.22 16 23 C 0.52 15.62 6.64 87.66 0.58 16.20 16 24 O -0.56 -20.04 12.05 -3.03 -0.04 -20.08 16 25 N -0.71 -14.80 5.00 -422.91 -2.11 -16.92 16 26 C 0.16 2.97 1.06 3.61 0.00 2.97 16 27 C -0.16 -3.27 8.40 71.98 0.60 -2.67 16 28 C -0.15 -1.58 8.59 71.98 0.62 -0.96 16 29 C -0.16 -3.30 8.40 71.98 0.60 -2.69 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 2.21 7.56 -2.39 -0.02 2.19 16 33 H 0.40 17.26 7.68 -92.71 -0.71 16.55 16 34 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.11 5.52 6.04 -2.91 -0.02 5.50 16 36 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 38 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 39 H 0.10 4.59 7.01 -2.91 -0.02 4.57 16 40 H 0.41 6.37 7.89 -92.71 -0.73 5.64 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.29 6.17 -2.39 -0.01 1.27 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.05 1.30 6.17 -2.39 -0.01 1.29 16 48 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -66.80 390.92 2.55 -64.26 By element: Atomic # 1 Polarization: 48.05 SS G_CDS: -0.48 Total: 47.57 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.13 Total: -8.44 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -4.04 Total: -96.36 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.08 Total: -50.61 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -66.80 2.55 -64.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361686708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.493 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds