Wall clock time and date at job start Tue Mar 31 2020 16:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46527 * 2 1 4 4 O 1.42899 * 109.46910 * 240.01089 * 2 1 3 5 5 C 1.42901 * 114.00584 * 89.99631 * 4 2 1 6 6 C 1.50697 * 109.47171 * 179.97438 * 5 4 2 7 7 C 1.38233 * 119.99964 * 269.72420 * 6 5 4 8 8 C 1.38242 * 120.00020 * 179.76414 * 7 6 5 9 9 C 1.38237 * 119.99940 * 0.51208 * 8 7 6 10 10 C 1.38237 * 119.99733 * 359.73889 * 9 8 7 11 11 C 1.38236 * 120.00154 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47710 * 120.00341 * 2 1 3 13 13 O 1.21284 * 120.00253 * 114.99500 * 12 2 1 14 14 N 1.34775 * 120.00074 * 295.00618 * 12 2 1 15 15 C 1.46495 * 120.00138 * 179.97438 * 14 12 2 16 16 C 1.53009 * 109.47345 * 177.57730 * 15 14 12 17 17 N 1.46500 * 112.84780 * 49.00205 * 16 15 14 18 18 C 1.36937 * 119.99810 * 66.52157 * 17 16 15 19 19 H 1.08004 * 120.00255 * 6.09411 * 18 17 16 20 20 C 1.38806 * 120.00245 * 186.08634 * 18 17 16 21 21 N 1.31624 * 119.99993 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00371 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47144 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47345 * 120.00181 * 22 20 18 25 25 H 1.48507 * 109.47085 * 240.00083 * 22 20 18 26 26 C 1.53782 * 113.61538 * 180.20030 * 16 15 14 27 27 C 1.53780 * 87.07767 * 140.06582 * 26 16 15 28 28 C 1.53780 * 87.08475 * 334.56744 * 27 26 16 29 29 H 1.08999 * 109.46806 * 299.99213 * 1 2 3 30 30 H 1.08996 * 109.47758 * 59.99817 * 1 2 3 31 31 H 1.09004 * 109.46527 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46781 * 299.99871 * 5 4 2 33 33 H 1.08997 * 109.46891 * 59.99563 * 5 4 2 34 34 H 1.07999 * 120.00282 * 0.02562 * 7 6 5 35 35 H 1.07997 * 120.00077 * 180.22742 * 8 7 6 36 36 H 1.07987 * 120.00157 * 179.72243 * 9 8 7 37 37 H 1.07999 * 120.00261 * 179.97438 * 10 9 8 38 38 H 1.08006 * 120.00124 * 179.97438 * 11 10 9 39 39 H 0.96999 * 119.99913 * 359.97438 * 14 12 2 40 40 H 1.09004 * 109.47435 * 57.58086 * 15 14 12 41 41 H 1.08994 * 109.47353 * 297.57841 * 15 14 12 42 42 H 0.96998 * 120.00334 * 246.52197 * 17 16 15 43 43 H 0.97001 * 120.00489 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.61449 * 25.52143 * 26 16 15 45 45 H 1.08998 * 113.68903 * 254.62605 * 26 16 15 46 46 H 1.09001 * 113.61483 * 89.11862 * 27 26 16 47 47 H 1.09006 * 113.61066 * 220.02057 * 27 26 16 48 48 H 1.08992 * 113.61691 * 139.98305 * 28 27 26 49 49 H 1.09007 * 113.61431 * 270.88826 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6734 -1.1669 5 6 2.2000 0.1832 -2.2942 6 6 2.7013 -0.6278 -3.4612 7 6 4.0599 -0.7951 -3.6538 8 6 4.5197 -1.5431 -4.7216 9 6 3.6211 -2.1150 -5.6027 10 6 2.2626 -1.9434 -5.4130 11 6 1.8027 -1.1994 -4.3425 12 6 2.0325 -0.7104 1.2303 13 8 2.6531 -1.7467 1.1213 14 7 1.7920 -0.1944 2.4519 15 6 2.2800 -0.8853 3.6480 16 6 1.9279 -0.0646 4.8904 17 7 0.5249 0.3562 4.9154 18 6 -0.4680 -0.5783 5.0425 19 1 -0.2160 -1.6129 5.2229 20 6 -1.7984 -0.1959 4.9396 21 7 -2.1056 1.0648 4.7194 22 14 -3.1528 -1.4705 5.1136 23 1 -2.5483 -2.8052 5.3556 24 1 -4.0283 -1.1095 6.2575 25 1 -3.9585 -1.5101 3.8668 26 6 2.4029 -0.7039 6.2060 27 6 2.7808 0.7138 6.6668 28 6 2.9183 1.0760 5.1786 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.2537 0.6549 -2.5588 33 1 2.9318 0.9516 -2.0450 34 1 4.7621 -0.3449 -2.9678 35 1 5.5810 -1.6769 -4.8700 36 1 3.9803 -2.6956 -6.4393 37 1 1.5605 -2.3898 -6.1015 38 1 0.7413 -1.0650 -4.1945 39 1 1.2959 0.6345 2.5391 40 1 3.3619 -1.0019 3.5843 41 1 1.8121 -1.8673 3.7166 42 1 0.2991 1.2967 4.8420 43 1 -3.0353 1.3322 4.6478 44 1 3.2599 -1.3666 6.0849 45 1 1.5995 -1.1531 6.7897 46 1 1.9700 1.2396 7.1711 47 1 3.7215 0.7582 7.2157 48 1 2.5300 2.0641 4.9320 49 1 3.9161 0.8998 4.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484642493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:28 Heat of formation + Delta-G solvation = -25.770689 kcal Electronic energy + Delta-G solvation = -28406.963257 eV Core-core repulsion = 24527.962506 eV Total energy + Delta-G solvation = -3879.000751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.83099 -39.36186 -38.61652 -37.20176 -33.90409 -33.26259 -32.54886 -31.06382 -30.81636 -29.94751 -27.21201 -26.27734 -25.29094 -24.14744 -23.49834 -22.74001 -21.59299 -21.47129 -19.86267 -18.29314 -17.38131 -17.19739 -16.94263 -16.58593 -15.81478 -15.42025 -15.35148 -15.06601 -14.63272 -14.46319 -14.12673 -14.03349 -13.70682 -13.56152 -13.30364 -13.16651 -12.98716 -12.81540 -12.46040 -12.21831 -12.05160 -12.00205 -11.68234 -11.38095 -11.23991 -11.17522 -11.04625 -10.97222 -10.85653 -10.37548 -10.25873 -10.13906 -9.85035 -9.76336 -9.49891 -9.19757 -9.07372 -8.99377 -8.88554 -8.40539 -7.10250 -5.87747 -3.17735 1.09520 1.24797 3.04942 3.18071 3.37826 3.45943 3.46912 3.68669 4.20661 4.50382 4.64118 4.69770 4.83529 4.91889 4.99689 5.06961 5.09975 5.18203 5.20180 5.22684 5.25845 5.29748 5.37510 5.43084 5.48405 5.49928 5.76467 5.79574 5.83254 5.84419 5.87497 6.05028 6.12627 6.18737 6.27192 6.32267 6.32744 6.35127 6.38313 6.44450 6.49886 6.71569 6.81366 6.85620 6.97863 7.04015 7.16223 7.67796 8.09790 8.30935 8.73723 9.42771 9.94885 10.30740 11.34063 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.002718 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.557662 B =10298.895051 C =11651.867439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.082 0.918 4 O -0.350 6.350 5 C 0.099 3.901 6 C -0.086 4.086 7 C -0.096 4.096 8 C -0.125 4.125 9 C -0.117 4.117 10 C -0.125 4.125 11 C -0.098 4.098 12 C 0.510 3.490 13 O -0.538 6.538 14 N -0.698 5.698 15 C 0.124 3.876 16 C 0.173 3.827 17 N -0.700 5.700 18 C -0.232 4.232 19 H 0.071 0.929 20 C -0.008 4.008 21 N -0.931 5.931 22 Si 0.902 3.098 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.151 4.151 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.405 0.595 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.030 1.718 -14.667 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.100 0.900 4 O -0.268 6.268 5 C 0.022 3.978 6 C -0.086 4.086 7 C -0.114 4.114 8 C -0.143 4.143 9 C -0.135 4.135 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.294 3.706 13 O -0.415 6.415 14 N -0.350 5.350 15 C -0.002 4.002 16 C 0.080 3.920 17 N -0.341 5.341 18 C -0.363 4.363 19 H 0.089 0.911 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.734 3.266 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.191 4.191 27 C -0.166 4.166 28 C -0.181 4.181 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.240 0.760 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.378 0.634 -14.729 18.623 hybrid contribution -1.326 0.209 0.138 1.349 sum 10.052 0.843 -14.592 17.739 Atomic orbital electron populations 1.22228 0.93087 1.04049 1.03427 1.21922 0.95433 0.95960 0.85556 0.90034 1.88131 1.86581 1.33651 1.18482 1.21408 0.99647 0.91741 0.84993 1.19593 0.93673 0.99765 0.95538 1.21098 0.94960 0.98110 0.97271 1.21145 0.99748 0.98127 0.95255 1.21184 0.93472 0.99520 0.99329 1.21143 0.95759 0.99277 0.98144 1.21095 0.99602 0.96523 0.94354 1.20209 0.80245 0.85681 0.84445 1.90674 1.40730 1.23392 1.86701 1.45677 1.56592 1.27942 1.04747 1.21769 0.97046 0.96799 0.84616 1.20846 0.86458 0.93334 0.91335 1.42077 0.97826 1.07034 1.87115 1.19139 0.85695 0.90563 1.40865 0.91137 1.24692 0.97107 0.96153 1.02434 1.69654 1.17409 1.14613 1.56258 0.86188 0.82410 0.80825 0.77220 1.20514 1.21937 1.21857 1.23297 1.00496 0.96149 0.99135 1.22636 1.00441 0.97802 0.95767 1.23185 0.98922 0.98949 0.97079 0.89769 0.91793 0.91170 0.92223 0.92392 0.85886 0.85957 0.86120 0.85962 0.85854 0.75952 0.92629 0.92031 0.77916 0.93545 0.91300 0.90712 0.90045 0.92752 0.91688 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.07 1.07 3.13 -27.88 -0.09 0.99 16 3 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 4 O -0.35 -5.49 9.51 -55.09 -0.52 -6.02 16 5 C 0.10 1.15 5.87 36.00 0.21 1.36 16 6 C -0.09 -1.01 5.51 -104.63 -0.58 -1.59 16 7 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 8 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 9 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 10 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 11 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 12 C 0.51 9.38 7.18 -10.99 -0.08 9.30 16 13 O -0.54 -11.97 16.51 -14.30 -0.24 -12.20 16 14 N -0.70 -12.32 5.39 -60.30 -0.33 -12.64 16 15 C 0.12 2.28 5.03 -4.04 -0.02 2.26 16 16 C 0.17 3.11 0.93 -131.00 -0.12 2.99 16 17 N -0.70 -15.31 4.48 -46.48 -0.21 -15.51 16 18 C -0.23 -5.86 9.25 -15.06 -0.14 -6.00 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -25.81 13.07 55.49 0.73 -25.08 16 22 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C -0.15 -2.54 7.28 -25.92 -0.19 -2.73 16 27 C -0.13 -1.97 7.99 -25.92 -0.21 -2.17 16 28 C -0.14 -2.16 7.37 -25.92 -0.19 -2.35 16 29 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 30 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 33 H 0.06 0.58 8.03 -51.93 -0.42 0.17 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.40 6.92 7.78 -40.82 -0.32 6.60 16 40 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.39 8.98 7.88 -40.82 -0.32 8.66 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 45 H 0.07 1.41 7.82 -51.93 -0.41 1.01 16 46 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 49 H 0.08 1.04 7.97 -51.92 -0.41 0.63 16 LS Contribution 407.91 15.07 6.15 6.15 Total: -1.00 -31.12 407.91 -10.66 -41.78 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -8.11 Total: 14.81 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.10 Total: -7.94 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.19 Total: -53.24 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.76 Total: -18.22 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.12 -10.66 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484642493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.006 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds