Wall clock time and date at job start Tue Mar 31 2020 16:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46527 * 2 1 4 4 O 1.42899 * 109.46910 * 240.01089 * 2 1 3 5 5 C 1.42901 * 114.00584 * 89.99631 * 4 2 1 6 6 C 1.50697 * 109.47171 * 179.97438 * 5 4 2 7 7 C 1.38233 * 119.99964 * 269.72420 * 6 5 4 8 8 C 1.38242 * 120.00020 * 179.76414 * 7 6 5 9 9 C 1.38237 * 119.99940 * 0.51208 * 8 7 6 10 10 C 1.38237 * 119.99733 * 359.73889 * 9 8 7 11 11 C 1.38236 * 120.00154 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47710 * 120.00341 * 2 1 3 13 13 O 1.21284 * 120.00253 * 114.99500 * 12 2 1 14 14 N 1.34775 * 120.00074 * 295.00618 * 12 2 1 15 15 C 1.46495 * 120.00138 * 179.97438 * 14 12 2 16 16 C 1.53009 * 109.47345 * 177.57730 * 15 14 12 17 17 N 1.46500 * 112.84780 * 49.00205 * 16 15 14 18 18 C 1.36937 * 119.99810 * 66.52157 * 17 16 15 19 19 H 1.08004 * 120.00255 * 6.09411 * 18 17 16 20 20 C 1.38806 * 120.00245 * 186.08634 * 18 17 16 21 21 N 1.31624 * 119.99993 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00371 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47144 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47345 * 120.00181 * 22 20 18 25 25 H 1.48507 * 109.47085 * 240.00083 * 22 20 18 26 26 C 1.53782 * 113.61538 * 180.20030 * 16 15 14 27 27 C 1.53780 * 87.07767 * 140.06582 * 26 16 15 28 28 C 1.53780 * 87.08475 * 334.56744 * 27 26 16 29 29 H 1.08999 * 109.46806 * 299.99213 * 1 2 3 30 30 H 1.08996 * 109.47758 * 59.99817 * 1 2 3 31 31 H 1.09004 * 109.46527 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46781 * 299.99871 * 5 4 2 33 33 H 1.08997 * 109.46891 * 59.99563 * 5 4 2 34 34 H 1.07999 * 120.00282 * 0.02562 * 7 6 5 35 35 H 1.07997 * 120.00077 * 180.22742 * 8 7 6 36 36 H 1.07987 * 120.00157 * 179.72243 * 9 8 7 37 37 H 1.07999 * 120.00261 * 179.97438 * 10 9 8 38 38 H 1.08006 * 120.00124 * 179.97438 * 11 10 9 39 39 H 0.96999 * 119.99913 * 359.97438 * 14 12 2 40 40 H 1.09004 * 109.47435 * 57.58086 * 15 14 12 41 41 H 1.08994 * 109.47353 * 297.57841 * 15 14 12 42 42 H 0.96998 * 120.00334 * 246.52197 * 17 16 15 43 43 H 0.97001 * 120.00489 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.61449 * 25.52143 * 26 16 15 45 45 H 1.08998 * 113.68903 * 254.62605 * 26 16 15 46 46 H 1.09001 * 113.61483 * 89.11862 * 27 26 16 47 47 H 1.09006 * 113.61066 * 220.02057 * 27 26 16 48 48 H 1.08992 * 113.61691 * 139.98305 * 28 27 26 49 49 H 1.09007 * 113.61431 * 270.88826 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6734 -1.1669 5 6 2.2000 0.1832 -2.2942 6 6 2.7013 -0.6278 -3.4612 7 6 4.0599 -0.7951 -3.6538 8 6 4.5197 -1.5431 -4.7216 9 6 3.6211 -2.1150 -5.6027 10 6 2.2626 -1.9434 -5.4130 11 6 1.8027 -1.1994 -4.3425 12 6 2.0325 -0.7104 1.2303 13 8 2.6531 -1.7467 1.1213 14 7 1.7920 -0.1944 2.4519 15 6 2.2800 -0.8853 3.6480 16 6 1.9279 -0.0646 4.8904 17 7 0.5249 0.3562 4.9154 18 6 -0.4680 -0.5783 5.0425 19 1 -0.2160 -1.6129 5.2229 20 6 -1.7984 -0.1959 4.9396 21 7 -2.1056 1.0648 4.7194 22 14 -3.1528 -1.4705 5.1136 23 1 -2.5483 -2.8052 5.3556 24 1 -4.0283 -1.1095 6.2575 25 1 -3.9585 -1.5101 3.8668 26 6 2.4029 -0.7039 6.2060 27 6 2.7808 0.7138 6.6668 28 6 2.9183 1.0760 5.1786 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.2537 0.6549 -2.5588 33 1 2.9318 0.9516 -2.0450 34 1 4.7621 -0.3449 -2.9678 35 1 5.5810 -1.6769 -4.8700 36 1 3.9803 -2.6956 -6.4393 37 1 1.5605 -2.3898 -6.1015 38 1 0.7413 -1.0650 -4.1945 39 1 1.2959 0.6345 2.5391 40 1 3.3619 -1.0019 3.5843 41 1 1.8121 -1.8673 3.7166 42 1 0.2991 1.2967 4.8420 43 1 -3.0353 1.3322 4.6478 44 1 3.2599 -1.3666 6.0849 45 1 1.5995 -1.1531 6.7897 46 1 1.9700 1.2396 7.1711 47 1 3.7215 0.7582 7.2157 48 1 2.5300 2.0641 4.9320 49 1 3.9161 0.8998 4.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484642493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:27 Heat of formation + Delta-G solvation = -43.376931 kcal Electronic energy + Delta-G solvation = -28407.726721 eV Core-core repulsion = 24527.962506 eV Total energy + Delta-G solvation = -3879.764215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.15165 -40.33928 -39.89585 -38.38003 -35.42688 -35.12294 -33.49423 -32.03016 -31.80284 -31.63420 -28.69015 -27.15506 -26.69564 -25.79893 -24.91348 -23.48895 -22.94394 -22.27116 -21.29057 -19.73962 -19.09673 -18.50752 -18.15947 -17.53192 -16.91293 -16.81915 -16.42252 -16.18103 -16.14087 -15.76812 -15.65411 -15.23211 -15.06499 -14.94967 -14.35242 -14.29966 -14.23792 -13.85127 -13.69575 -13.42832 -13.31425 -13.05335 -13.00165 -12.97701 -12.93148 -12.51709 -12.40809 -12.14132 -11.93353 -11.92181 -11.84319 -11.62842 -11.47405 -11.04497 -10.91826 -10.80512 -10.45584 -9.92509 -9.83289 -9.77187 -8.97822 -7.92348 -5.18830 0.31187 0.48906 1.43712 1.47913 1.53910 1.61573 2.00182 2.55067 2.74566 3.19129 3.40079 3.68341 3.76617 3.80807 3.87340 3.87891 3.97425 3.99486 4.07262 4.10395 4.13941 4.24387 4.27959 4.34182 4.38120 4.62238 4.62796 4.67759 4.74046 4.77448 4.84477 4.91364 4.92832 4.99595 5.06168 5.14160 5.15070 5.17621 5.32387 5.42684 5.51194 5.53399 5.59234 5.65828 5.67227 5.71430 6.04975 6.10441 6.32019 6.66599 7.29179 7.39236 8.10174 8.36190 9.29605 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.002718 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.557662 B =10298.895051 C =11651.867439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 H 0.117 0.883 4 O -0.379 6.379 5 C 0.094 3.906 6 C -0.109 4.109 7 C -0.115 4.115 8 C -0.132 4.132 9 C -0.120 4.120 10 C -0.132 4.132 11 C -0.114 4.114 12 C 0.504 3.496 13 O -0.582 6.582 14 N -0.692 5.692 15 C 0.129 3.871 16 C 0.160 3.840 17 N -0.702 5.702 18 C -0.217 4.217 19 H 0.061 0.939 20 C -0.058 4.058 21 N -0.956 5.956 22 Si 0.948 3.052 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.296 1.296 26 C -0.151 4.151 27 C -0.120 4.120 28 C -0.127 4.127 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.409 0.591 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.380 0.620 43 H 0.250 0.750 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.514 2.321 -15.710 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 H 0.135 0.865 4 O -0.298 6.298 5 C 0.019 3.981 6 C -0.109 4.109 7 C -0.133 4.133 8 C -0.150 4.150 9 C -0.138 4.138 10 C -0.150 4.150 11 C -0.132 4.132 12 C 0.290 3.710 13 O -0.462 6.462 14 N -0.343 5.343 15 C 0.003 3.997 16 C 0.068 3.932 17 N -0.342 5.342 18 C -0.349 4.349 19 H 0.079 0.921 20 C -0.251 4.251 21 N -0.607 5.607 22 Si 0.780 3.220 23 H -0.204 1.204 24 H -0.223 1.223 25 H -0.224 1.224 26 C -0.191 4.191 27 C -0.158 4.158 28 C -0.164 4.164 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.245 0.755 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.213 0.787 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.886 1.240 -15.763 20.398 hybrid contribution -1.689 -0.050 0.425 1.742 sum 11.197 1.190 -15.338 19.028 Atomic orbital electron populations 1.22165 0.92786 1.02746 1.04356 1.21880 0.95380 0.96891 0.83951 0.86544 1.88100 1.86725 1.35499 1.19445 1.21630 1.01068 0.91641 0.83771 1.19784 0.94269 1.00809 0.96038 1.21317 0.95001 0.98844 0.98100 1.21471 1.01099 0.97589 0.94850 1.21559 0.93316 0.99149 0.99799 1.21479 0.96608 0.98834 0.98088 1.21328 1.00023 0.96969 0.94866 1.20940 0.79293 0.85206 0.85525 1.90643 1.42842 1.25388 1.87371 1.45677 1.56198 1.27813 1.04646 1.21687 0.97587 0.95360 0.85074 1.21115 0.85136 0.95364 0.91552 1.42067 0.99087 1.06064 1.86935 1.19227 0.86499 0.90624 1.38521 0.92119 1.25179 0.98680 0.97354 1.03885 1.69742 1.17124 1.15574 1.58211 0.85446 0.80546 0.79419 0.76590 1.20354 1.22290 1.22378 1.23326 1.00464 0.97517 0.97789 1.22558 1.01185 0.95886 0.96147 1.23142 0.98974 0.97681 0.96647 0.90841 0.88788 0.93550 0.90455 0.90869 0.85511 0.83927 0.83569 0.83870 0.85183 0.75471 0.91112 0.95276 0.78672 0.94134 0.89032 0.93397 0.91893 0.89741 0.91377 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 9.48 71.98 0.68 -3.85 16 2 C 0.08 2.28 3.13 29.85 0.09 2.38 16 3 H 0.12 2.49 7.79 -2.38 -0.02 2.47 16 4 O -0.38 -11.64 9.51 -129.99 -1.24 -12.87 16 5 C 0.09 2.09 5.87 71.24 0.42 2.50 16 6 C -0.11 -2.50 5.51 -19.87 -0.11 -2.61 16 7 C -0.11 -2.46 9.70 22.27 0.22 -2.25 16 8 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 9 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 10 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 11 C -0.11 -2.39 9.70 22.27 0.22 -2.17 16 12 C 0.50 18.49 7.18 87.66 0.63 19.11 16 13 O -0.58 -26.28 16.51 15.94 0.26 -26.01 16 14 N -0.69 -24.19 5.39 -463.07 -2.50 -26.69 16 15 C 0.13 4.70 5.03 86.38 0.43 5.13 16 16 C 0.16 5.59 0.93 4.13 0.00 5.59 16 17 N -0.70 -30.70 4.48 -300.95 -1.35 -32.05 16 18 C -0.22 -11.07 9.25 84.03 0.78 -10.29 16 19 H 0.06 3.19 7.83 -2.91 -0.02 3.17 16 20 C -0.06 -3.11 5.50 84.86 0.47 -2.64 16 21 N -0.96 -53.52 13.07 21.65 0.28 -53.24 16 22 Si 0.95 45.19 29.55 68.60 2.03 47.21 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 C -0.15 -4.89 7.28 31.12 0.23 -4.66 16 27 C -0.12 -3.38 7.99 31.12 0.25 -3.13 16 28 C -0.13 -3.48 7.37 31.12 0.23 -3.25 16 29 H 0.07 2.20 7.92 -2.39 -0.02 2.18 16 30 H 0.09 2.02 7.87 -2.39 -0.02 2.00 16 31 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.08 1.38 7.82 -2.39 -0.02 1.37 16 33 H 0.07 1.35 8.03 -2.39 -0.02 1.33 16 34 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.15 1.59 8.06 -2.92 -0.02 1.57 16 37 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.41 13.72 7.78 -92.71 -0.72 13.00 16 40 H 0.07 2.36 7.95 -2.38 -0.02 2.34 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.38 17.64 7.88 -92.71 -0.73 16.91 16 43 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 44 H 0.09 2.55 8.10 -2.39 -0.02 2.53 16 45 H 0.05 1.80 7.82 -2.39 -0.02 1.78 16 46 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 48 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 49 H 0.10 2.36 7.97 -2.38 -0.02 2.34 16 Total: -1.00 -68.43 407.91 2.19 -66.24 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -0.51 Total: 43.63 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.20 Total: -6.23 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -3.56 Total: -111.97 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.97 Total: -38.88 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -68.43 2.19 -66.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484642493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.863 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds