Wall clock time and date at job start Tue Mar 31 2020 16:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 O 1.42897 * 109.47003 * 240.00680 * 2 1 3 5 5 C 1.42900 * 114.00500 * 89.99563 * 4 2 1 6 6 C 1.50700 * 109.47575 * 180.02562 * 5 4 2 7 7 C 1.38233 * 119.99723 * 269.73055 * 6 5 4 8 8 C 1.38240 * 119.99266 * 179.74377 * 7 6 5 9 9 C 1.38232 * 120.00175 * 0.52678 * 8 7 6 10 10 C 1.38227 * 120.00097 * 359.74704 * 9 8 7 11 11 C 1.38232 * 119.99871 * 90.00109 * 6 5 4 12 12 C 1.50698 * 109.47520 * 120.00429 * 2 1 3 13 13 O 1.21278 * 119.99736 * 99.95003 * 12 2 1 14 14 N 1.34774 * 119.99952 * 279.95438 * 12 2 1 15 15 C 1.46496 * 120.00168 * 4.92881 * 14 12 2 16 16 C 1.46499 * 120.00035 * 184.93039 * 14 12 2 17 17 H 1.09007 * 110.88555 * 3.88225 * 16 14 12 18 18 C 1.55153 * 111.00459 * 239.99854 * 16 14 12 19 19 C 1.54330 * 102.94260 * 206.42212 * 18 16 14 20 20 N 1.47023 * 107.26961 * 22.19421 * 19 18 16 21 21 C 1.36931 * 125.64749 * 181.02491 * 20 19 18 22 22 H 1.08002 * 120.00015 * 173.07607 * 21 20 19 23 23 C 1.38813 * 120.00098 * 353.07434 * 21 20 19 24 24 N 1.31621 * 120.00255 * 161.61049 * 23 21 20 25 25 Si 1.86803 * 120.00025 * 341.61805 * 23 21 20 26 26 H 1.48499 * 109.46903 * 185.48503 * 25 23 21 27 27 H 1.48503 * 109.46858 * 305.48108 * 25 23 21 28 28 H 1.48499 * 109.47104 * 65.47898 * 25 23 21 29 29 C 1.47423 * 108.70373 * 1.28417 * 20 19 18 30 30 H 1.09002 * 109.47404 * 184.56209 * 1 2 3 31 31 H 1.09008 * 109.47000 * 304.55811 * 1 2 3 32 32 H 1.09000 * 109.47648 * 64.55364 * 1 2 3 33 33 H 1.09008 * 109.47087 * 300.00587 * 5 4 2 34 34 H 1.08999 * 109.46905 * 59.99660 * 5 4 2 35 35 H 1.07992 * 120.00210 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.99515 * 180.29212 * 8 7 6 37 37 H 1.08009 * 119.99521 * 179.76954 * 9 8 7 38 38 H 1.08006 * 119.99831 * 179.97438 * 10 9 8 39 39 H 1.08003 * 120.00287 * 359.97438 * 11 6 5 40 40 H 1.09005 * 109.47242 * 272.64132 * 15 14 12 41 41 H 1.09000 * 109.47176 * 32.64186 * 15 14 12 42 42 H 1.09005 * 109.47485 * 152.64518 * 15 14 12 43 43 H 1.09001 * 110.72186 * 88.06436 * 18 16 14 44 44 H 1.08998 * 110.72299 * 324.78216 * 18 16 14 45 45 H 1.08999 * 109.88217 * 262.77907 * 19 18 16 46 46 H 1.08993 * 109.87953 * 141.61120 * 19 18 16 47 47 H 0.96999 * 119.99999 * 354.95047 * 24 23 21 48 48 H 1.08999 * 110.36308 * 94.48412 * 29 20 19 49 49 H 1.08999 * 110.37043 * 216.80510 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.1999 0.1831 -2.2941 6 6 2.7001 -0.6281 -3.4615 7 6 4.0584 -0.7964 -3.6548 8 6 4.5170 -1.5449 -4.7227 9 6 3.6176 -2.1161 -5.6033 10 6 2.2594 -1.9431 -5.4132 11 6 1.8006 -1.1993 -4.3422 12 6 2.0324 -0.7105 1.2304 13 8 2.4056 -1.8620 1.1557 14 7 2.0668 -0.0663 2.4137 15 6 1.5164 1.2866 2.5275 16 6 2.6548 -0.7188 3.5861 17 1 3.0778 -1.6877 3.3203 18 6 1.6109 -0.8613 4.7251 19 6 2.4872 -0.8910 5.9952 20 7 3.7685 -0.2546 5.6565 21 6 4.8314 -0.0990 6.5057 22 1 5.7703 0.2815 6.1315 23 6 4.7020 -0.4302 7.8475 24 7 5.7754 -0.6319 8.5821 25 14 3.0045 -0.5900 8.6107 26 1 3.1383 -0.8177 10.0720 27 1 2.2353 0.6577 8.3725 28 1 2.2906 -1.7370 7.9942 29 6 3.7172 0.1938 4.2531 30 1 -0.3634 -1.0244 0.0817 31 1 -0.3633 0.5830 0.8464 32 1 -0.3634 0.4415 -0.9279 33 1 1.2536 0.6549 -2.5588 34 1 2.9317 0.9515 -2.0450 35 1 4.7612 -0.3462 -2.9695 36 1 5.5782 -1.6803 -4.8710 37 1 3.9761 -2.6978 -6.4398 38 1 1.5566 -2.3890 -6.1016 39 1 0.7394 -1.0645 -4.1934 40 1 2.2853 2.0147 2.2689 41 1 0.6714 1.3935 1.8473 42 1 1.1829 1.4583 3.5510 43 1 1.0511 -1.7907 4.6212 44 1 0.9380 -0.0040 4.7410 45 1 2.6560 -1.9223 6.3051 46 1 1.9981 -0.3365 6.7960 47 1 6.6537 -0.6214 8.1705 48 1 3.4106 1.2385 4.1997 49 1 4.6875 0.0575 3.7755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494837708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:51 Heat of formation + Delta-G solvation = -5.409487 kcal Electronic energy + Delta-G solvation = -28417.099465 eV Core-core repulsion = 24538.981642 eV Total energy + Delta-G solvation = -3878.117823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.39179 -39.58047 -38.21588 -37.22104 -35.10588 -32.96510 -32.27871 -31.19634 -31.07180 -29.48650 -28.23307 -27.03755 -26.47406 -24.66723 -23.39994 -22.87662 -21.65039 -21.14205 -20.37488 -19.10471 -17.83222 -17.51218 -17.07638 -16.80659 -16.18595 -16.01344 -15.53182 -15.35650 -15.07859 -14.67227 -14.45241 -13.86768 -13.75256 -13.64076 -13.51351 -13.28504 -13.13813 -12.88952 -12.84071 -12.62721 -12.51361 -12.30315 -12.17766 -11.95012 -11.71635 -11.44186 -11.33513 -11.20759 -11.08001 -10.99146 -10.56884 -10.17073 -9.99041 -9.52752 -9.40452 -9.20361 -9.13187 -9.02553 -8.73212 -8.47178 -7.07265 -6.32105 -3.21414 0.94707 1.11887 2.53291 2.70362 3.36214 3.42636 3.48993 3.71529 3.83233 4.27380 4.47346 4.49110 4.62791 4.62992 4.70154 4.75188 4.83555 4.87440 4.93645 4.97480 4.98451 5.15067 5.17856 5.21748 5.27462 5.33249 5.36939 5.40705 5.44063 5.51096 5.59246 5.65776 5.73879 5.82435 5.85869 5.86840 6.14117 6.17253 6.21054 6.28519 6.34856 6.39183 6.52597 6.63799 6.68682 6.74449 6.84752 7.40909 7.63374 8.18937 8.32497 9.03153 9.54847 10.20315 11.18348 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.002257 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.226271 B =12403.470005 C =13083.434810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.073 3.927 3 H 0.084 0.916 4 O -0.350 6.350 5 C 0.099 3.901 6 C -0.089 4.089 7 C -0.096 4.096 8 C -0.123 4.123 9 C -0.115 4.115 10 C -0.125 4.125 11 C -0.098 4.098 12 C 0.515 3.485 13 O -0.517 6.517 14 N -0.602 5.602 15 C 0.066 3.934 16 C 0.125 3.875 17 H 0.111 0.889 18 C -0.139 4.139 19 C 0.113 3.887 20 N -0.610 5.610 21 C -0.324 4.324 22 H 0.079 0.921 23 C -0.021 4.021 24 N -0.924 5.924 25 Si 1.065 2.935 26 H -0.301 1.301 27 H -0.299 1.299 28 H -0.283 1.283 29 C 0.132 3.868 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.027 0.973 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.403 4.484 -27.572 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.268 6.268 5 C 0.023 3.977 6 C -0.089 4.089 7 C -0.114 4.114 8 C -0.141 4.141 9 C -0.133 4.133 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.302 3.698 13 O -0.392 6.392 14 N -0.336 5.336 15 C -0.077 4.077 16 C 0.022 3.978 17 H 0.128 0.872 18 C -0.177 4.177 19 C -0.012 4.012 20 N -0.338 5.338 21 C -0.451 4.451 22 H 0.097 0.903 23 C -0.221 4.221 24 N -0.565 5.565 25 Si 0.899 3.101 26 H -0.229 1.229 27 H -0.227 1.227 28 H -0.211 1.211 29 C 0.005 3.995 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.849 3.399 -26.136 29.322 hybrid contribution 0.730 0.767 -1.406 1.760 sum -12.118 4.167 -27.542 30.378 Atomic orbital electron populations 1.22298 0.93517 1.04098 1.03080 1.21922 0.95228 0.96157 0.85571 0.89845 1.88150 1.86468 1.33731 1.18459 1.21436 0.99701 0.91756 0.84788 1.19544 0.93721 1.00107 0.95574 1.21117 0.94951 0.97999 0.97299 1.21175 0.99908 0.97907 0.95131 1.21212 0.93458 0.99311 0.99293 1.21143 0.95792 0.99261 0.98123 1.21055 0.99433 0.96648 0.94436 1.20298 0.78644 0.87000 0.83903 1.90722 1.46637 1.16805 1.84995 1.47710 1.59988 1.16664 1.09244 1.21991 0.98633 0.83126 1.03962 1.22485 0.94104 0.98083 0.83175 0.87151 1.22943 0.97704 1.01902 0.95195 1.21982 0.86942 0.97480 0.94761 1.44740 1.13037 1.67974 1.08039 1.20147 0.89972 1.44034 0.90918 0.90296 1.25805 1.05302 0.98400 0.92548 1.70896 0.98568 1.48852 1.38220 0.83947 0.75105 0.76239 0.74857 1.22913 1.22746 1.21065 1.21801 0.96382 0.95062 0.86251 0.90902 0.90490 0.91149 0.92192 0.92183 0.85818 0.85815 0.86005 0.85913 0.85944 0.92245 0.90993 0.89967 0.90910 0.91172 0.93182 0.95225 0.92802 0.95520 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.30 37.16 0.35 -1.07 16 2 C 0.07 0.79 2.32 -27.89 -0.06 0.72 16 3 H 0.08 0.69 7.09 -51.93 -0.37 0.32 16 4 O -0.35 -4.45 9.58 -54.29 -0.52 -4.97 16 5 C 0.10 0.91 5.87 36.01 0.21 1.12 16 6 C -0.09 -0.89 5.51 -104.63 -0.58 -1.46 16 7 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 8 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 9 C -0.11 -0.92 10.05 -39.59 -0.40 -1.32 16 10 C -0.13 -1.01 10.05 -39.59 -0.40 -1.41 16 11 C -0.10 -0.87 9.70 -39.58 -0.38 -1.26 16 12 C 0.52 7.75 6.94 -10.99 -0.08 7.67 16 13 O -0.52 -10.22 16.02 -13.50 -0.22 -10.44 16 14 N -0.60 -8.45 2.91 -171.34 -0.50 -8.95 16 15 C 0.07 0.65 8.36 59.84 0.50 1.15 16 16 C 0.13 2.20 3.45 -65.66 -0.23 1.97 16 17 H 0.11 2.20 7.04 -51.92 -0.37 1.83 16 18 C -0.14 -2.36 6.50 -24.90 -0.16 -2.52 16 19 C 0.11 2.48 4.58 -3.06 -0.01 2.47 16 20 N -0.61 -15.07 3.34 -169.93 -0.57 -15.64 16 21 C -0.32 -9.37 10.54 -15.06 -0.16 -9.53 16 22 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 23 C -0.02 -0.63 5.49 -17.43 -0.10 -0.72 16 24 N -0.92 -29.30 13.70 55.49 0.76 -28.54 16 25 Si 1.06 26.78 24.55 -169.99 -4.17 22.61 16 26 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 27 H -0.30 -7.19 6.91 56.52 0.39 -6.80 16 28 H -0.28 -6.52 5.30 56.52 0.30 -6.22 16 29 C 0.13 2.67 6.79 -2.41 -0.02 2.65 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.51 5.84 -51.92 -0.30 0.20 16 32 H 0.07 0.44 7.79 -51.93 -0.40 0.03 16 33 H 0.06 0.41 7.73 -51.92 -0.40 0.01 16 34 H 0.06 0.47 8.03 -51.93 -0.42 0.05 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.50 4.69 -51.93 -0.24 0.25 16 42 H 0.08 0.84 6.41 -51.93 -0.33 0.51 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 45 H 0.05 1.16 6.63 -51.93 -0.34 0.82 16 46 H 0.03 0.68 4.09 -51.93 -0.21 0.46 16 47 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 48 H 0.03 0.51 7.01 -51.93 -0.36 0.14 16 49 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -36.50 383.04 -9.32 -45.82 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.58 Total: -1.35 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.29 Total: -4.33 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.31 Total: -53.13 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.74 Total: -15.40 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.17 Total: 22.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.50 -9.32 -45.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494837708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.414 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds