Wall clock time and date at job start Tue Mar 31 2020 16:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 O 1.42897 * 109.47003 * 240.00680 * 2 1 3 5 5 C 1.42900 * 114.00500 * 89.99563 * 4 2 1 6 6 C 1.50700 * 109.47575 * 180.02562 * 5 4 2 7 7 C 1.38233 * 119.99723 * 269.73055 * 6 5 4 8 8 C 1.38240 * 119.99266 * 179.74377 * 7 6 5 9 9 C 1.38232 * 120.00175 * 0.52678 * 8 7 6 10 10 C 1.38227 * 120.00097 * 359.74704 * 9 8 7 11 11 C 1.38232 * 119.99871 * 90.00109 * 6 5 4 12 12 C 1.50698 * 109.47520 * 120.00429 * 2 1 3 13 13 O 1.21278 * 119.99736 * 99.95003 * 12 2 1 14 14 N 1.34774 * 119.99952 * 279.95438 * 12 2 1 15 15 C 1.46496 * 120.00168 * 4.92881 * 14 12 2 16 16 C 1.46499 * 120.00035 * 184.93039 * 14 12 2 17 17 H 1.09007 * 110.88555 * 3.88225 * 16 14 12 18 18 C 1.55153 * 111.00459 * 239.99854 * 16 14 12 19 19 C 1.54330 * 102.94260 * 206.42212 * 18 16 14 20 20 N 1.47023 * 107.26961 * 22.19421 * 19 18 16 21 21 C 1.36931 * 125.64749 * 181.02491 * 20 19 18 22 22 H 1.08002 * 120.00015 * 173.07607 * 21 20 19 23 23 C 1.38813 * 120.00098 * 353.07434 * 21 20 19 24 24 N 1.31621 * 120.00255 * 161.61049 * 23 21 20 25 25 Si 1.86803 * 120.00025 * 341.61805 * 23 21 20 26 26 H 1.48499 * 109.46903 * 185.48503 * 25 23 21 27 27 H 1.48503 * 109.46858 * 305.48108 * 25 23 21 28 28 H 1.48499 * 109.47104 * 65.47898 * 25 23 21 29 29 C 1.47423 * 108.70373 * 1.28417 * 20 19 18 30 30 H 1.09002 * 109.47404 * 184.56209 * 1 2 3 31 31 H 1.09008 * 109.47000 * 304.55811 * 1 2 3 32 32 H 1.09000 * 109.47648 * 64.55364 * 1 2 3 33 33 H 1.09008 * 109.47087 * 300.00587 * 5 4 2 34 34 H 1.08999 * 109.46905 * 59.99660 * 5 4 2 35 35 H 1.07992 * 120.00210 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.99515 * 180.29212 * 8 7 6 37 37 H 1.08009 * 119.99521 * 179.76954 * 9 8 7 38 38 H 1.08006 * 119.99831 * 179.97438 * 10 9 8 39 39 H 1.08003 * 120.00287 * 359.97438 * 11 6 5 40 40 H 1.09005 * 109.47242 * 272.64132 * 15 14 12 41 41 H 1.09000 * 109.47176 * 32.64186 * 15 14 12 42 42 H 1.09005 * 109.47485 * 152.64518 * 15 14 12 43 43 H 1.09001 * 110.72186 * 88.06436 * 18 16 14 44 44 H 1.08998 * 110.72299 * 324.78216 * 18 16 14 45 45 H 1.08999 * 109.88217 * 262.77907 * 19 18 16 46 46 H 1.08993 * 109.87953 * 141.61120 * 19 18 16 47 47 H 0.96999 * 119.99999 * 354.95047 * 24 23 21 48 48 H 1.08999 * 110.36308 * 94.48412 * 29 20 19 49 49 H 1.08999 * 110.37043 * 216.80510 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.1999 0.1831 -2.2941 6 6 2.7001 -0.6281 -3.4615 7 6 4.0584 -0.7964 -3.6548 8 6 4.5170 -1.5449 -4.7227 9 6 3.6176 -2.1161 -5.6033 10 6 2.2594 -1.9431 -5.4132 11 6 1.8006 -1.1993 -4.3422 12 6 2.0324 -0.7105 1.2304 13 8 2.4056 -1.8620 1.1557 14 7 2.0668 -0.0663 2.4137 15 6 1.5164 1.2866 2.5275 16 6 2.6548 -0.7188 3.5861 17 1 3.0778 -1.6877 3.3203 18 6 1.6109 -0.8613 4.7251 19 6 2.4872 -0.8910 5.9952 20 7 3.7685 -0.2546 5.6565 21 6 4.8314 -0.0990 6.5057 22 1 5.7703 0.2815 6.1315 23 6 4.7020 -0.4302 7.8475 24 7 5.7754 -0.6319 8.5821 25 14 3.0045 -0.5900 8.6107 26 1 3.1383 -0.8177 10.0720 27 1 2.2353 0.6577 8.3725 28 1 2.2906 -1.7370 7.9942 29 6 3.7172 0.1938 4.2531 30 1 -0.3634 -1.0244 0.0817 31 1 -0.3633 0.5830 0.8464 32 1 -0.3634 0.4415 -0.9279 33 1 1.2536 0.6549 -2.5588 34 1 2.9317 0.9515 -2.0450 35 1 4.7612 -0.3462 -2.9695 36 1 5.5782 -1.6803 -4.8710 37 1 3.9761 -2.6978 -6.4398 38 1 1.5566 -2.3890 -6.1016 39 1 0.7394 -1.0645 -4.1934 40 1 2.2853 2.0147 2.2689 41 1 0.6714 1.3935 1.8473 42 1 1.1829 1.4583 3.5510 43 1 1.0511 -1.7907 4.6212 44 1 0.9380 -0.0040 4.7410 45 1 2.6560 -1.9223 6.3051 46 1 1.9981 -0.3365 6.7960 47 1 6.6537 -0.6214 8.1705 48 1 3.4106 1.2385 4.1997 49 1 4.6875 0.0575 3.7755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494837708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:49 Heat of formation + Delta-G solvation = -29.281725 kcal Electronic energy + Delta-G solvation = -28418.134643 eV Core-core repulsion = 24538.981642 eV Total energy + Delta-G solvation = -3879.153001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.49713 -40.29661 -39.48368 -38.34409 -36.47140 -34.54496 -33.45618 -32.03216 -31.81539 -31.11763 -29.74494 -27.98220 -27.15633 -26.15892 -24.74871 -23.50641 -22.75419 -22.28826 -21.91288 -20.31569 -19.59591 -18.76883 -17.98370 -17.68128 -17.30577 -16.95293 -16.78955 -16.26735 -16.18967 -15.86402 -15.56004 -15.29682 -15.16633 -14.48931 -14.44338 -14.30614 -14.14700 -14.10210 -14.01519 -13.82788 -13.52436 -13.38068 -13.12729 -13.12080 -13.06790 -12.72744 -12.52315 -12.29863 -12.27806 -11.94589 -11.84266 -11.70215 -11.46550 -11.05111 -11.00274 -10.75327 -10.52806 -9.84737 -9.78696 -9.73612 -9.14547 -8.68824 -5.49477 0.29408 0.47478 1.41519 1.43301 1.50501 1.65335 1.74827 2.55866 2.62008 3.05957 3.12281 3.29588 3.40635 3.66797 3.76011 3.81234 3.87113 3.96378 4.01758 4.07251 4.12513 4.18141 4.26233 4.27067 4.33562 4.35392 4.38411 4.55771 4.61544 4.64564 4.72170 4.73922 4.75596 4.80224 4.84544 4.94721 5.04338 5.05635 5.12103 5.12678 5.26398 5.38941 5.51830 5.52908 5.58512 5.63474 6.01838 6.05346 6.08532 6.35967 6.77563 7.07471 7.39519 8.03386 8.83458 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.002257 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.226271 B =12403.470005 C =13083.434810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.116 0.884 4 O -0.385 6.385 5 C 0.098 3.902 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.136 4.136 9 C -0.122 4.122 10 C -0.131 4.131 11 C -0.108 4.108 12 C 0.508 3.492 13 O -0.577 6.577 14 N -0.597 5.597 15 C 0.055 3.945 16 C 0.137 3.863 17 H 0.078 0.922 18 C -0.122 4.122 19 C 0.103 3.897 20 N -0.631 5.631 21 C -0.316 4.316 22 H 0.045 0.955 23 C -0.080 4.080 24 N -0.960 5.960 25 Si 1.105 2.895 26 H -0.312 1.312 27 H -0.275 1.275 28 H -0.250 1.250 29 C 0.133 3.867 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.032 0.968 46 H 0.037 0.963 47 H 0.247 0.753 48 H 0.053 0.947 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 6.059 -29.594 34.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.134 0.866 4 O -0.304 6.304 5 C 0.022 3.978 6 C -0.110 4.110 7 C -0.137 4.137 8 C -0.154 4.154 9 C -0.140 4.140 10 C -0.149 4.149 11 C -0.126 4.126 12 C 0.297 3.703 13 O -0.456 6.456 14 N -0.330 5.330 15 C -0.086 4.086 16 C 0.032 3.968 17 H 0.096 0.904 18 C -0.160 4.160 19 C -0.021 4.021 20 N -0.360 5.360 21 C -0.444 4.444 22 H 0.063 0.937 23 C -0.273 4.273 24 N -0.604 5.604 25 Si 0.932 3.068 26 H -0.242 1.242 27 H -0.202 1.202 28 H -0.175 1.175 29 C 0.006 3.994 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -16.799 5.025 -28.223 33.226 hybrid contribution 2.078 0.293 -0.919 2.291 sum -14.721 5.318 -29.142 33.079 Atomic orbital electron populations 1.22304 0.91075 1.03496 1.05476 1.22038 0.96829 0.96478 0.83007 0.86605 1.88111 1.86935 1.35721 1.19667 1.21616 1.01354 0.91346 0.83474 1.19814 0.93926 1.00876 0.96364 1.21311 0.95413 0.98951 0.98013 1.21445 1.00959 0.97871 0.95133 1.21549 0.93587 0.99141 0.99689 1.21503 0.96331 0.98836 0.98256 1.21345 1.00223 0.96573 0.94483 1.21242 0.77425 0.86507 0.85154 1.90694 1.49347 1.19634 1.85901 1.47733 1.59290 1.18065 1.07875 1.22376 1.00272 0.80600 1.05372 1.21976 0.93783 0.96255 0.84810 0.90411 1.22890 0.96981 1.04424 0.91742 1.22129 0.86350 0.96075 0.97559 1.44772 1.13282 1.68675 1.09235 1.20024 0.90250 1.42362 0.91760 0.93713 1.27206 1.08074 0.98476 0.93564 1.71010 0.98554 1.52035 1.38758 0.83499 0.71473 0.78430 0.73400 1.24156 1.20184 1.17527 1.21909 0.96544 0.96852 0.84054 0.93023 0.88238 0.88529 0.89420 0.91304 0.86049 0.84563 0.83862 0.83664 0.84338 0.90941 0.87265 0.89588 0.89224 0.87660 0.94957 0.94573 0.94448 0.92940 0.95643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.30 71.98 0.67 -1.37 16 2 C 0.08 1.45 2.32 29.85 0.07 1.52 16 3 H 0.12 1.38 7.09 -2.39 -0.02 1.37 16 4 O -0.38 -9.22 9.58 -130.75 -1.25 -10.47 16 5 C 0.10 1.58 5.87 71.24 0.42 1.99 16 6 C -0.11 -2.08 5.51 -19.87 -0.11 -2.19 16 7 C -0.12 -2.34 9.70 22.27 0.22 -2.13 16 8 C -0.14 -2.34 10.05 22.27 0.22 -2.11 16 9 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 10 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 11 C -0.11 -1.77 9.70 22.27 0.22 -1.55 16 12 C 0.51 14.54 6.94 87.66 0.61 15.15 16 13 O -0.58 -23.21 16.02 15.20 0.24 -22.97 16 14 N -0.60 -15.23 2.91 -814.40 -2.37 -17.59 16 15 C 0.05 0.82 8.36 127.77 1.07 1.88 16 16 C 0.14 4.64 3.45 46.46 0.16 4.80 16 17 H 0.08 3.17 7.04 -2.38 -0.02 3.15 16 18 C -0.12 -3.75 6.50 31.78 0.21 -3.54 16 19 C 0.10 4.31 4.58 86.73 0.40 4.71 16 20 N -0.63 -31.10 3.34 -691.55 -2.31 -33.41 16 21 C -0.32 -18.78 10.54 84.03 0.89 -17.90 16 22 H 0.04 2.88 8.06 -2.91 -0.02 2.86 16 23 C -0.08 -4.90 5.49 84.86 0.47 -4.43 16 24 N -0.96 -63.10 13.70 21.65 0.30 -62.81 16 25 Si 1.11 53.51 24.55 68.60 1.68 55.19 16 26 H -0.31 -15.63 7.11 99.48 0.71 -14.93 16 27 H -0.27 -12.16 6.91 99.48 0.69 -11.47 16 28 H -0.25 -10.73 5.30 99.48 0.53 -10.21 16 29 C 0.13 5.28 6.79 86.93 0.59 5.87 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.74 5.84 -2.38 -0.01 0.73 16 32 H 0.10 0.71 7.79 -2.39 -0.02 0.69 16 33 H 0.09 0.88 7.73 -2.38 -0.02 0.86 16 34 H 0.07 0.94 8.03 -2.39 -0.02 0.92 16 35 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.11 0.84 4.69 -2.39 -0.01 0.83 16 42 H 0.09 1.29 6.41 -2.38 -0.02 1.27 16 43 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.11 2.54 6.43 -2.39 -0.02 2.52 16 45 H 0.03 1.46 6.63 -2.39 -0.02 1.44 16 46 H 0.04 1.51 4.09 -2.39 -0.01 1.50 16 47 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 48 H 0.05 1.85 7.01 -2.39 -0.02 1.84 16 49 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -85.46 383.04 3.53 -81.93 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.71 Total: 12.72 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 6.53 Total: -2.59 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.38 Total: -113.81 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.01 Total: -33.44 kcal Atomic # 14 Polarization: 53.51 SS G_CDS: 1.68 Total: 55.19 kcal Total: -85.46 3.53 -81.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494837708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.651 kcal (2) G-P(sol) polarization free energy of solvation -85.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds