Wall clock time and date at job start Tue Mar 31 2020 19:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47229 * 2 1 4 4 C 1.46500 * 120.00184 * 275.00004 * 3 2 1 5 5 C 1.50708 * 109.47130 * 297.99559 * 4 3 2 6 6 H 1.08004 * 119.99472 * 0.89015 * 5 4 3 7 7 C 1.37869 * 120.00179 * 180.88733 * 5 4 3 8 8 N 1.31519 * 120.00160 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00126 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47124 * 90.00032 * 9 7 5 11 11 H 1.48502 * 109.47458 * 210.00195 * 9 7 5 12 12 H 1.48501 * 109.47205 * 330.00456 * 9 7 5 13 13 S 1.65604 * 120.00160 * 95.00370 * 3 2 1 14 14 O 1.42103 * 106.39946 * 328.21807 * 13 3 2 15 15 O 1.42098 * 106.40211 * 195.29934 * 13 3 2 16 16 N 1.65596 * 107.21998 * 81.75935 * 13 3 2 17 17 C 1.46492 * 120.00123 * 91.09251 * 16 13 3 18 18 C 1.53002 * 109.47436 * 67.51044 * 17 16 13 19 19 C 1.53000 * 109.47201 * 307.50893 * 17 16 13 20 20 C 1.53005 * 109.47346 * 187.50923 * 17 16 13 21 21 C 1.53002 * 109.46666 * 294.99948 * 20 17 16 22 22 C 1.53007 * 109.46558 * 179.97438 * 21 20 17 23 23 C 1.53003 * 109.47025 * 60.00129 * 22 21 20 24 24 C 1.52990 * 109.47271 * 299.99879 * 23 22 21 25 25 C 1.53000 * 109.47565 * 59.99927 * 24 23 22 26 26 H 1.09007 * 109.46908 * 300.00226 * 1 2 3 27 27 H 1.08995 * 109.47320 * 59.99877 * 1 2 3 28 28 H 1.08994 * 109.47659 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46620 * 239.99444 * 2 1 3 30 30 H 1.09001 * 109.46702 * 119.99847 * 2 1 3 31 31 H 1.09003 * 109.46835 * 57.98956 * 4 3 2 32 32 H 1.08998 * 109.47848 * 177.99661 * 4 3 2 33 33 H 0.96993 * 120.00143 * 180.02562 * 8 7 5 34 34 H 0.97007 * 119.99997 * 271.09290 * 16 13 3 35 35 H 1.09002 * 109.47281 * 171.87131 * 18 17 16 36 36 H 1.09009 * 109.46692 * 291.86799 * 18 17 16 37 37 H 1.08997 * 109.46937 * 51.86259 * 18 17 16 38 38 H 1.08999 * 109.47116 * 303.85797 * 19 17 16 39 39 H 1.08998 * 109.47480 * 63.85893 * 19 17 16 40 40 H 1.09006 * 109.46980 * 183.85786 * 19 17 16 41 41 H 1.08994 * 109.46896 * 54.99797 * 20 17 16 42 42 H 1.09000 * 109.47198 * 60.00312 * 21 20 17 43 43 H 1.08994 * 109.47340 * 299.99577 * 21 20 17 44 44 H 1.08994 * 109.47252 * 300.00001 * 22 21 20 45 45 H 1.08997 * 109.46449 * 179.97438 * 22 21 20 46 46 H 1.09007 * 109.46637 * 60.00013 * 23 22 21 47 47 H 1.08997 * 109.46855 * 179.97438 * 23 22 21 48 48 H 1.08995 * 109.47338 * 180.02562 * 24 23 22 49 49 H 1.09005 * 109.47428 * 300.00213 * 24 23 22 50 50 H 1.09005 * 109.47221 * 59.99965 * 25 24 23 51 51 H 1.08997 * 109.47518 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.1647 1.4066 -2.1389 6 1 3.6407 0.5004 -1.7943 7 6 3.4777 1.9211 -3.3791 8 7 4.3556 1.3081 -4.1428 9 14 2.6538 3.4879 -3.9753 10 1 3.4629 4.6617 -3.5593 11 1 2.5484 3.4592 -5.4563 12 1 1.2953 3.5887 -3.3841 13 16 2.4123 2.1201 1.4287 14 8 1.5465 1.5746 2.4147 15 8 2.4955 3.5113 1.1513 16 7 3.9431 1.6306 1.8280 17 6 5.1008 2.4105 1.3835 18 6 5.1072 3.7648 2.0953 19 6 5.0182 2.6293 -0.1285 20 6 6.3863 1.6517 1.7196 21 6 6.5313 1.5420 3.2387 22 6 7.8164 0.7827 3.5748 23 6 9.0184 1.5355 3.0007 24 6 8.8734 1.6454 1.4817 25 6 7.5883 2.4045 1.1455 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.1949 2.1416 -1.7727 32 1 2.4979 3.1246 -1.0627 33 1 4.5760 1.6703 -5.0152 34 1 4.0731 0.8275 2.3563 35 1 6.0395 4.2856 1.8770 36 1 4.2661 4.3633 1.7449 37 1 5.0202 3.6105 3.1707 38 1 4.9447 1.6652 -0.6317 39 1 4.1382 3.2288 -0.3614 40 1 5.9131 3.1499 -0.4697 41 1 6.3425 0.6529 1.2856 42 1 5.6752 1.0053 3.6476 43 1 6.5750 2.5409 3.6727 44 1 7.7723 -0.2162 3.1409 45 1 7.9199 0.7049 4.6570 46 1 9.0625 2.5345 3.4348 47 1 9.9340 0.9948 3.2405 48 1 9.7299 2.1812 1.0727 49 1 8.8292 0.6464 1.0477 50 1 7.6323 3.4035 1.5795 51 1 7.4847 2.4824 0.0633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649787151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:06 Heat of formation + Delta-G solvation = -100.211266 kcal Electronic energy + Delta-G solvation = -30093.595192 eV Core-core repulsion = 26346.810407 eV Total energy + Delta-G solvation = -3746.784785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.58929 -36.90140 -36.24784 -35.77138 -35.25726 -32.63011 -31.29555 -30.56757 -30.21100 -28.71984 -27.19937 -26.68998 -23.29508 -23.01093 -22.33478 -21.36567 -20.31314 -18.95517 -18.51129 -17.41206 -16.99827 -16.72025 -15.85313 -15.38674 -14.97660 -14.34082 -14.24076 -14.16283 -13.93853 -13.76075 -13.53197 -13.22152 -12.76364 -12.68387 -12.51705 -12.39843 -12.23808 -12.14411 -12.04636 -11.94755 -11.56162 -11.48745 -11.43412 -11.23323 -11.11633 -10.91721 -10.89082 -10.86055 -10.67530 -10.58255 -10.48941 -10.21766 -10.16299 -10.14915 -9.94791 -9.62980 -9.51137 -9.07386 -8.62639 -8.08008 -6.15868 -4.13358 1.23752 3.25563 3.33000 3.38137 3.51232 4.08062 4.35278 4.67085 4.76801 4.77092 4.96125 5.16077 5.18120 5.24116 5.25997 5.39393 5.48883 5.51778 5.54503 5.61756 5.64067 5.69662 5.71992 5.78818 5.84985 5.96693 6.03420 6.09234 6.11204 6.16462 6.20454 6.23577 6.30502 6.31980 6.36861 6.41747 6.52589 6.58014 6.62392 6.68131 6.71487 6.92479 7.00124 7.10849 7.26269 7.35036 7.51360 7.62084 8.42075 8.86328 9.45217 10.96068 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.005501 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.456640 B = 5088.667853 C = 6451.927661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.987 5.987 4 C 0.213 3.787 5 C -0.524 4.524 6 H 0.083 0.917 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 S 2.783 3.217 14 O -1.000 7.000 15 O -0.980 6.980 16 N -1.118 6.118 17 C 0.191 3.809 18 C -0.184 4.184 19 C -0.187 4.187 20 C -0.079 4.079 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -0.744 12.376 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.563 4.563 6 H 0.100 0.900 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.688 3.312 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.188 1.188 13 S 2.792 3.208 14 O -0.984 6.984 15 O -0.964 6.964 16 N -0.876 5.876 17 C 0.103 3.897 18 C -0.242 4.242 19 C -0.244 4.244 20 C -0.099 4.099 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.156 4.156 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.885 0.046 12.577 13.492 hybrid contribution -0.010 0.128 -0.519 0.535 sum 4.874 0.174 12.058 13.007 Atomic orbital electron populations 1.22201 0.97046 1.01431 1.02277 1.20979 0.93549 0.82612 1.02435 1.57530 1.78882 1.23206 1.23127 1.19644 0.97678 0.92629 0.81127 1.21234 1.22920 1.11875 1.00293 0.89956 1.24784 0.94635 0.96723 0.96408 1.69877 1.32829 1.39691 1.10764 0.87071 0.81143 0.84673 0.78310 1.19753 1.21163 1.18825 1.01773 0.72639 0.73590 0.72818 1.93556 1.64318 1.80888 1.59603 1.93514 1.86645 1.31036 1.85248 1.56129 1.23887 1.39092 1.68478 1.20089 0.84350 0.89915 0.95374 1.22704 1.04031 0.97363 1.00107 1.22863 1.03520 1.05919 0.92129 1.21311 0.93464 0.99798 0.95298 1.21672 0.97080 1.00774 0.95975 1.21538 0.94951 0.99252 0.99915 1.21532 0.97641 1.00331 0.96098 1.21528 0.97692 1.00820 0.95583 1.21738 0.93285 0.98839 1.01727 0.92634 0.92171 0.92344 0.89184 0.92423 0.95688 0.93366 0.92591 0.76279 0.91683 0.89293 0.92893 0.88423 0.90516 0.91748 0.90451 0.92136 0.91538 0.92100 0.92479 0.92250 0.92573 0.92244 0.91978 0.91695 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.24 5.91 -4.05 -0.02 2.21 16 3 N -0.99 -19.13 2.96 -115.66 -0.34 -19.47 16 4 C 0.21 4.75 3.75 -5.19 -0.02 4.73 16 5 C -0.52 -12.92 6.52 -34.44 -0.22 -13.15 16 6 H 0.08 2.16 7.22 -52.48 -0.38 1.79 16 7 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 8 N -0.89 -24.98 13.96 55.43 0.77 -24.21 16 9 Si 0.86 20.28 27.45 -169.99 -4.67 15.61 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.26 -6.05 6.57 56.52 0.37 -5.68 16 13 S 2.78 51.84 5.56 -107.50 -0.60 51.24 16 14 O -1.00 -19.92 17.19 -57.17 -0.98 -20.90 16 15 O -0.98 -20.33 12.02 -57.17 -0.69 -21.01 16 16 N -1.12 -17.18 5.38 0.54 0.00 -17.18 16 17 C 0.19 2.88 0.53 -131.82 -0.07 2.81 16 18 C -0.18 -2.70 7.51 37.16 0.28 -2.42 16 19 C -0.19 -3.41 6.52 37.16 0.24 -3.16 16 20 C -0.08 -1.00 1.62 -90.61 -0.15 -1.14 16 21 C -0.12 -1.28 4.60 -26.73 -0.12 -1.41 16 22 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 23 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 24 C -0.12 -1.24 5.92 -26.74 -0.16 -1.40 16 25 C -0.12 -1.42 4.49 -26.73 -0.12 -1.54 16 26 H 0.05 0.90 7.91 -51.92 -0.41 0.49 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.61 7.10 -51.93 -0.37 1.25 16 30 H 0.06 0.87 7.83 -51.93 -0.41 0.46 16 31 H 0.03 0.57 7.26 -51.93 -0.38 0.20 16 32 H 0.05 1.12 4.53 -51.93 -0.24 0.88 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.41 5.27 7.57 -34.47 -0.26 5.01 16 35 H 0.06 0.84 6.23 -51.93 -0.32 0.52 16 36 H 0.09 1.52 5.76 -51.92 -0.30 1.22 16 37 H 0.05 0.70 6.85 -51.93 -0.36 0.35 16 38 H 0.10 1.99 5.96 -51.93 -0.31 1.68 16 39 H 0.08 1.57 3.87 -51.93 -0.20 1.37 16 40 H 0.06 1.10 6.12 -51.93 -0.32 0.78 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.65 7.03 -51.93 -0.36 0.28 16 43 H 0.07 0.73 6.53 -51.93 -0.34 0.39 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.74 6.41 -51.93 -0.33 0.41 16 51 H 0.08 1.01 6.26 -51.93 -0.33 0.68 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -29.01 372.21 -9.86 -38.88 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.58 Total: 8.84 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -0.40 Total: -17.42 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.43 Total: -60.85 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.67 Total: -41.92 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Atomic # 16 Polarization: 51.84 SS G_CDS: -0.60 Total: 51.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.01 -9.86 -38.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649787151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.336 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds