Wall clock time and date at job start Tue Mar 31 2020 16:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46532 * 2 1 4 4 O 1.42894 * 109.47076 * 239.99921 * 2 1 3 5 5 C 1.42907 * 113.99875 * 89.99976 * 4 2 1 6 6 C 1.50699 * 109.47046 * 179.97438 * 5 4 2 7 7 C 1.38231 * 119.99666 * 269.72401 * 6 5 4 8 8 C 1.38240 * 119.99916 * 179.79218 * 7 6 5 9 9 C 1.38233 * 119.99676 * 0.45964 * 8 7 6 10 10 C 1.38237 * 120.00172 * 359.77343 * 9 8 7 11 11 C 1.38234 * 120.00046 * 0.02562 * 10 9 8 12 12 C 1.50702 * 109.47210 * 119.99972 * 2 1 3 13 13 O 1.21278 * 120.00024 * 120.00222 * 12 2 1 14 14 N 1.34779 * 119.99951 * 300.00597 * 12 2 1 15 15 C 1.46499 * 119.99807 * 180.27697 * 14 12 2 16 16 C 1.53005 * 109.47046 * 179.71983 * 15 14 12 17 17 H 1.08992 * 110.63715 * 54.29838 * 16 15 14 18 18 C 1.55157 * 110.71949 * 177.43975 * 16 15 14 19 19 C 1.55120 * 101.48385 * 153.73526 * 18 16 15 20 20 N 1.47424 * 104.94320 * 323.21932 * 19 18 16 21 21 C 1.36934 * 125.64715 * 203.97100 * 20 19 18 22 22 H 1.08000 * 119.99979 * 169.99095 * 21 20 19 23 23 C 1.38814 * 120.00302 * 349.98209 * 21 20 19 24 24 N 1.31619 * 120.00029 * 350.42662 * 23 21 20 25 25 Si 1.86800 * 120.00082 * 170.42182 * 23 21 20 26 26 H 1.48497 * 109.46945 * 94.14325 * 25 23 21 27 27 H 1.48503 * 109.47030 * 214.14395 * 25 23 21 28 28 H 1.48497 * 109.47144 * 334.14178 * 25 23 21 29 29 C 1.47017 * 108.70192 * 24.00611 * 20 19 18 30 30 H 1.08998 * 109.47660 * 60.00103 * 1 2 3 31 31 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47279 * 299.99475 * 1 2 3 33 33 H 1.08996 * 109.46913 * 300.00152 * 5 4 2 34 34 H 1.09003 * 109.46773 * 59.99854 * 5 4 2 35 35 H 1.07997 * 120.00570 * 359.97438 * 7 6 5 36 36 H 1.07999 * 120.00455 * 180.25604 * 8 7 6 37 37 H 1.08003 * 120.00002 * 179.79176 * 9 8 7 38 38 H 1.07998 * 120.00081 * 179.97438 * 10 9 8 39 39 H 1.07999 * 120.00382 * 179.97438 * 11 10 9 40 40 H 0.96995 * 119.99864 * 359.97438 * 14 12 2 41 41 H 1.09002 * 109.47074 * 299.72247 * 15 14 12 42 42 H 1.09005 * 109.47375 * 59.72005 * 15 14 12 43 43 H 1.09006 * 111.00345 * 271.94005 * 18 16 15 44 44 H 1.09001 * 111.00573 * 35.79141 * 18 16 15 45 45 H 1.09003 * 110.41405 * 204.29115 * 19 18 16 46 46 H 1.09001 * 110.29975 * 82.09074 * 19 18 16 47 47 H 0.96998 * 120.00265 * 179.97438 * 24 23 21 48 48 H 1.09003 * 109.88427 * 239.52255 * 29 20 19 49 49 H 1.08996 * 110.01378 * 118.43135 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2000 0.1830 -2.2941 6 6 2.7014 -0.6282 -3.4610 7 6 4.0600 -0.7954 -3.6535 8 6 4.5198 -1.5431 -4.7215 9 6 3.6213 -2.1154 -5.6023 10 6 2.2627 -1.9441 -5.4125 11 6 1.8028 -1.2000 -4.3422 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.2000 -0.9371 3.6507 16 6 1.6946 -0.2126 4.9000 17 1 0.6095 -0.1135 4.8740 18 6 2.1475 -0.9540 6.1855 19 6 2.1684 0.2032 7.2183 20 7 2.6516 1.3754 6.4661 21 6 3.2642 2.4740 7.0074 22 1 3.7265 3.2069 6.3628 23 6 3.2908 2.6457 8.3846 24 7 2.5718 1.8617 9.1596 25 14 4.3474 3.9894 9.1380 26 1 3.5262 5.2102 9.3395 27 1 4.8769 3.5276 10.4463 28 1 5.4788 4.2986 8.2273 29 6 2.3660 1.1700 5.0386 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.2538 0.6547 -2.5588 34 1 2.9319 0.9514 -2.0449 35 1 4.7621 -0.3445 -2.9680 36 1 5.5812 -1.6772 -4.8696 37 1 3.9806 -2.6968 -6.4386 38 1 1.5607 -2.3910 -6.1009 39 1 0.7415 -1.0658 -4.1941 40 1 1.1493 0.5388 2.5436 41 1 1.8373 -1.9649 3.6550 42 1 3.2901 -0.9366 3.6465 43 1 1.4267 -1.7211 6.4686 44 1 3.1421 -1.3819 6.0599 45 1 2.8498 -0.0297 8.0366 46 1 1.1646 0.3860 7.6018 47 1 2.5907 1.9814 10.1220 48 1 3.2946 1.1900 4.4681 49 1 1.6925 1.9471 4.6773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663603977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:08 Heat of formation + Delta-G solvation = -36.728120 kcal Electronic energy + Delta-G solvation = -27479.451534 eV Core-core repulsion = 23599.975633 eV Total energy + Delta-G solvation = -3879.475901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.13529 -39.49746 -38.00960 -37.31816 -34.65906 -33.01051 -32.40913 -31.20120 -31.10686 -29.68773 -28.21111 -26.52168 -25.72061 -24.39696 -23.08185 -22.87599 -21.65022 -20.70974 -19.96723 -19.64848 -17.66556 -17.33595 -16.91479 -16.68652 -16.08537 -15.66603 -15.58928 -15.38537 -14.82542 -14.67458 -14.25588 -14.16712 -13.72381 -13.68901 -13.53962 -13.20963 -12.97527 -12.75003 -12.57254 -12.51894 -12.35244 -11.79271 -11.75010 -11.68502 -11.55122 -11.33858 -11.21727 -10.88902 -10.82266 -10.45500 -10.19851 -10.12773 -10.02239 -9.89559 -9.69813 -9.49701 -9.20863 -9.13373 -8.97023 -8.59700 -6.81772 -5.76678 -3.09113 0.94572 1.11404 2.62057 2.80128 3.37965 3.43448 3.44078 3.46142 3.88664 4.43505 4.47786 4.47954 4.59748 4.66972 4.70163 4.77459 4.84286 4.93228 4.99529 5.09169 5.21545 5.23753 5.28649 5.33613 5.38457 5.40675 5.48281 5.65404 5.67777 5.73501 5.79285 5.85622 6.04570 6.08827 6.13679 6.20398 6.28649 6.30621 6.41159 6.52576 6.54832 6.66741 6.68216 6.79689 6.88519 7.48710 7.53378 7.56610 7.76670 8.24360 8.25128 9.17785 9.79842 10.47415 11.36496 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.001835 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.008596 B =15255.763618 C =15730.976967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.069 3.931 3 H 0.088 0.912 4 O -0.349 6.349 5 C 0.099 3.901 6 C -0.089 4.089 7 C -0.095 4.095 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.125 4.125 11 C -0.098 4.098 12 C 0.512 3.488 13 O -0.523 6.523 14 N -0.723 5.723 15 C 0.134 3.866 16 C -0.113 4.113 17 H 0.077 0.923 18 C -0.137 4.137 19 C 0.173 3.827 20 N -0.603 5.603 21 C -0.230 4.230 22 H 0.075 0.925 23 C -0.007 4.007 24 N -0.918 5.918 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.141 3.859 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.027 0.973 47 H 0.253 0.747 48 H 0.024 0.976 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -5.155 -26.866 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.008 3.992 3 H 0.106 0.894 4 O -0.268 6.268 5 C 0.023 3.977 6 C -0.089 4.089 7 C -0.113 4.113 8 C -0.142 4.142 9 C -0.133 4.133 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.296 3.704 13 O -0.398 6.398 14 N -0.376 5.376 15 C 0.010 3.990 16 C -0.133 4.133 17 H 0.095 0.905 18 C -0.176 4.176 19 C 0.048 3.952 20 N -0.329 5.329 21 C -0.358 4.358 22 H 0.093 0.907 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.015 3.985 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.694 -5.992 -26.740 27.651 hybrid contribution 0.135 1.413 0.529 1.515 sum -3.559 -4.579 -26.211 26.845 Atomic orbital electron populations 1.22247 0.93536 1.03874 1.03193 1.21926 0.95094 0.96487 0.85735 0.89385 1.88137 1.86527 1.33671 1.18432 1.21437 0.99744 0.91755 0.84765 1.19552 0.93714 1.00028 0.95585 1.21119 0.94964 0.97962 0.97275 1.21171 0.99877 0.97958 0.95147 1.21211 0.93466 0.99358 0.99288 1.21143 0.95780 0.99292 0.98129 1.21061 0.99455 0.96643 0.94447 1.20295 0.80761 0.85073 0.84262 1.90725 1.36834 1.25684 1.86524 1.46011 1.53765 1.32394 1.05427 1.21466 0.99447 0.95711 0.82331 1.22427 1.00071 0.96965 0.93794 0.90451 1.23035 1.00304 0.98799 0.95495 1.21433 0.98503 0.83031 0.92225 1.44467 1.69594 1.18479 1.00380 1.19008 1.27390 0.99190 0.90240 0.90709 1.24825 1.00002 0.99294 0.96291 1.69954 1.42183 1.40749 1.03603 0.86134 0.80020 0.81076 0.78707 1.21630 1.21580 1.20611 1.21328 0.96143 0.92728 0.88279 0.91293 0.91032 0.90689 0.92168 0.92139 0.85797 0.85845 0.86033 0.85931 0.85937 0.76477 0.91577 0.91214 0.91893 0.91841 0.91263 0.95536 0.93692 0.95854 0.96387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.42 37.16 0.35 -0.98 16 2 C 0.07 0.71 3.14 -27.88 -0.09 0.63 16 3 H 0.09 0.71 7.79 -51.93 -0.40 0.30 16 4 O -0.35 -4.29 9.50 -55.14 -0.52 -4.82 16 5 C 0.10 0.89 5.87 36.01 0.21 1.11 16 6 C -0.09 -0.86 5.51 -104.63 -0.58 -1.44 16 7 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 8 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 9 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 10 C -0.13 -0.99 10.05 -39.58 -0.40 -1.38 16 11 C -0.10 -0.85 9.70 -39.58 -0.38 -1.24 16 12 C 0.51 7.11 7.23 -10.98 -0.08 7.04 16 13 O -0.52 -9.69 16.50 -14.35 -0.24 -9.93 16 14 N -0.72 -9.02 5.32 -60.29 -0.32 -9.34 16 15 C 0.13 1.94 5.00 -4.04 -0.02 1.92 16 16 C -0.11 -1.82 2.98 -88.78 -0.26 -2.09 16 17 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.14 -2.47 6.55 -24.47 -0.16 -2.63 16 19 C 0.17 4.10 5.43 -2.42 -0.01 4.09 16 20 N -0.60 -15.19 3.40 -169.94 -0.58 -15.77 16 21 C -0.23 -6.38 10.24 -15.06 -0.15 -6.53 16 22 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 23 C -0.01 -0.21 5.40 -17.43 -0.09 -0.30 16 24 N -0.92 -26.79 10.68 55.49 0.59 -26.20 16 25 Si 0.91 21.95 29.56 -169.99 -5.03 16.93 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.14 2.80 6.64 -3.07 -0.02 2.78 16 30 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.48 7.56 -51.93 -0.39 0.08 16 33 H 0.06 0.41 7.81 -51.93 -0.41 0.00 16 34 H 0.06 0.48 8.03 -51.93 -0.42 0.06 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.40 4.05 7.82 -40.82 -0.32 3.73 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 45 H 0.07 1.84 6.94 -51.93 -0.36 1.48 16 46 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -34.68 402.07 -11.04 -45.72 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.14 Total: 0.42 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.87 Total: -3.06 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.31 Total: -51.31 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.76 Total: -14.75 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.68 -11.04 -45.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.989 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds